BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1569 (PAB1569) DE:Hypothetical protein
         (140 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75104 hypothetical protein PAB1569 - Pyrococcus abyssi (st...   279  8e-75
pir||E71060 hypothetical protein PH1179 - Pyrococcus horikoshii ...    85  3e-16

>pir||B75104 hypothetical protein PAB1569 - Pyrococcus abyssi (strain Orsay)
           >gi|5458647|emb|CAB50135.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 140
           
 Score =  279 bits (707), Expect = 8e-75
 Identities = 140/140 (100%), Positives = 140/140 (100%)

Query: 1   MIVHPEVQGMNQNKEQQATEPLAKFHVKVTRGGQFTFPYYTRIYYNLNIGDFVELIVRTR 60
           MIVHPEVQGMNQNKEQQATEPLAKFHVKVTRGGQFTFPYYTRIYYNLNIGDFVELIVRTR
Sbjct: 1   MIVHPEVQGMNQNKEQQATEPLAKFHVKVTRGGQFTFPYYTRIYYNLNIGDFVELIVRTR 60

Query: 61  KSKLRGFFIARLGDKAGVTIPSEIRTNLRIKQGDIVEIVLIKYYRLQDILGDKVKILEEL 120
           KSKLRGFFIARLGDKAGVTIPSEIRTNLRIKQGDIVEIVLIKYYRLQDILGDKVKILEEL
Sbjct: 61  KSKLRGFFIARLGDKAGVTIPSEIRTNLRIKQGDIVEIVLIKYYRLQDILGDKVKILEEL 120

Query: 121 ASKGYKLLTPEEEKQLLLLL 140
           ASKGYKLLTPEEEKQLLLLL
Sbjct: 121 ASKGYKLLTPEEEKQLLLLL 140


>pir||E71060 hypothetical protein PH1179 - Pyrococcus horikoshii
           >gi|3257596|dbj|BAA30279.1| (AP000005) 143aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 143
           
 Score = 85.0 bits (207), Expect = 3e-16
 Identities = 47/132 (35%), Positives = 74/132 (55%), Gaps = 9/132 (6%)

Query: 15  EQQATEPLAKFHVKVTRGGQFTFPYYTRIYYNLNIGDFVELIVRTRKS-------KLRGF 67
           +Q+  EPLAKFH  V   GQ   P   R  + L  GD +E+IVR+          K R +
Sbjct: 4   QQKTVEPLAKFHASVNIKGQLVVPVKDREVFGLKRGDILEIIVRSFDVINGKIHIKKRAY 63

Query: 68  FIARLGDKAGVTIPSEIRTNLRIKQGDIVEIVLIKYYRLQDILGDKVKILEEL--ASKGY 125
            + RL  K  +TIP E+R  L I  GD VE++L+ +++  +++ +K K + +L  A+   
Sbjct: 64  ILVRLSSKGLITIPEEVRRELGISPGDTVEVLLVGFHKFDELVTEKGKQIAKLIQANTHM 123

Query: 126 KLLTPEEEKQLL 137
           +L+T EEEK ++
Sbjct: 124 RLITSEEEKTII 135


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.143    0.397 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50525995
Number of Sequences: 2977
Number of extensions: 1866104
Number of successful extensions: 4665
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4662
Number of HSP's gapped (non-prelim): 2
length of query: 140
length of database: 189,106,746
effective HSP length: 53
effective length of query: 87
effective length of database: 157,386,935
effective search space: 13692663345
effective search space used: 13692663345
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)