BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1570 (PAB1570) DE:Hypothetical protein
         (177 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75104 hypothetical protein PAB1570 - Pyrococcus abyssi (st...   360  8e-99
pir||A71060 hypothetical protein PH1175 - Pyrococcus horikoshii ...   151  6e-36

>pir||A75104 hypothetical protein PAB1570 - Pyrococcus abyssi (strain Orsay)
           >gi|5458646|emb|CAB50134.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 177
           
 Score =  360 bits (913), Expect = 8e-99
 Identities = 177/177 (100%), Positives = 177/177 (100%)

Query: 1   MMASRTVLVYDFSVSLDVVEEFMYRHSRDVVNRLRLSRILESARRLAPERVPVYISDVDA 60
           MMASRTVLVYDFSVSLDVVEEFMYRHSRDVVNRLRLSRILESARRLAPERVPVYISDVDA
Sbjct: 1   MMASRTVLVYDFSVSLDVVEEFMYRHSRDVVNRLRLSRILESARRLAPERVPVYISDVDA 60

Query: 61  LMMQYYDGGRRRRFIAFELKNMRKSVALKGSYVKVNGKQYELHYYFSQMAGIDFYYIVRV 120
           LMMQYYDGGRRRRFIAFELKNMRKSVALKGSYVKVNGKQYELHYYFSQMAGIDFYYIVRV
Sbjct: 61  LMMQYYDGGRRRRFIAFELKNMRKSVALKGSYVKVNGKQYELHYYFSQMAGIDFYYIVRV 120

Query: 121 GDSYYVWNVKRAPVEFKWMGDRSKSTYDYYALIPRDFTAKVEDEELAFFLSELVFKG 177
           GDSYYVWNVKRAPVEFKWMGDRSKSTYDYYALIPRDFTAKVEDEELAFFLSELVFKG
Sbjct: 121 GDSYYVWNVKRAPVEFKWMGDRSKSTYDYYALIPRDFTAKVEDEELAFFLSELVFKG 177


>pir||A71060 hypothetical protein PH1175 - Pyrococcus horikoshii
           >gi|3257592|dbj|BAA30275.1| (AP000005) 191aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 191
           
 Score =  151 bits (377), Expect = 6e-36
 Identities = 80/178 (44%), Positives = 116/178 (64%), Gaps = 10/178 (5%)

Query: 1   MMASRTVLVYDFSVSLDVVEEFMYRHSRDVVNRLRLSRILESARRLAPERVPVYISDVDA 60
           +MASRT  VYD S  L  +E F  RHS+DV NRL  SR LE AR L+ ++  + ++D+DA
Sbjct: 16  VMASRTAFVYDSSFPLRSLEMFFIRHSKDVFNRLEFSRALEKARLLSSDKHFLSVTDIDA 75

Query: 61  LMMQYYDGGRRRRFIAFELKNMRKSVALKGSYVKVNGKQYELHYYFSQMAGIDFYYIVRV 120
           L++   DG  R    AFE+KNMR+ V   G YVKVNG+QYE +  F +  GID +Y+++V
Sbjct: 76  LVV--VDGVIR---AAFEIKNMREDVVNYGGYVKVNGRQYETYMEFVKKTGIDVFYLIKV 130

Query: 121 GD---SYYVWNVKRAPVEFKWMGDRSKSTYDYYALIPRDFTAKVEDEELAFFLSELVF 175
                 +Y W+VKR PV F+W+G     T DYYALI +++ A +++E+L  +L +++F
Sbjct: 131 EGVRRYFYSWSVKRVPVRFEWLG--KNETRDYYALIRKEYVATLDEEDLPMYLRDIIF 186


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.140    0.411 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62011074
Number of Sequences: 2977
Number of extensions: 2411475
Number of successful extensions: 6444
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6440
Number of HSP's gapped (non-prelim): 2
length of query: 177
length of database: 189,106,746
effective HSP length: 52
effective length of query: 125
effective length of database: 157,985,422
effective search space: 19748177750
effective search space used: 19748177750
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 162 (67.5 bits)