BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1575 1174125 1173634 -164 !not a gene!
         (164 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71083 hypothetical protein PH0933 - Pyrococcus horikoshii ...   120  1e-26

>pir||G71083 hypothetical protein PH0933 - Pyrococcus horikoshii
           >gi|3257346|dbj|BAA30029.1| (AP000004) 114aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 114
           
 Score =  120 bits (297), Expect = 1e-26
 Identities = 68/112 (60%), Positives = 71/112 (62%)

Query: 53  GLSGLYISLNRSSEALYTNSPFFTGTLFGTSSPSSILPRTLTVATISSLSNMLLPYSSTS 112
           G  GLYI    SS+ALYTNSPF TGTLFGTSS  S  P  LTVAT SS S  L PYS  S
Sbjct: 3   GPFGLYILSRISSDALYTNSPFLTGTLFGTSSSPSTFPSILTVATTSSFSTKLSPYSFIS 62

Query: 113 SFIELNVLLAEESIQFTFLTPRTMPRTSSPSLFFVITNSPKDTSLLGLTENS 164
           S  EL +L   E  Q TF T  T PRT SP LF V TNSPK+    GLTENS
Sbjct: 63  SLKELKLLFPAERSQLTFFTLLTTPRTHSPLLFLVTTNSPKEIFSSGLTENS 114


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.130    0.353 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52347013
Number of Sequences: 2977
Number of extensions: 1879761
Number of successful extensions: 5747
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5746
Number of HSP's gapped (non-prelim): 1
length of query: 164
length of database: 189,106,746
effective HSP length: 60
effective length of query: 104
effective length of database: 153,197,526
effective search space: 15932542704
effective search space used: 15932542704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)