BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1576 (PAB1576) DE:PHOSPHOGLYCOLATE PHOSPHATASE
(231 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75103 phosphoglycolate phosphatase PAB1576 - Pyrococcus ab... 460 e-129
pir||B71084 hypothetical protein PH0935 - Pyrococcus horikoshii ... 369 e-101
pir||D64479 hypothetical protein MJ1437 - Methanococcus jannasch... 80 2e-14
gb|AAK42335.1| 2-haloalkanoic acid dehalogenase [Sulfolobus solf... 78 9e-14
pir||S74066 hypothetical protein c0135 - Sulfolobus solfataricus... 78 9e-14
pir||G71045 hypothetical protein PH1655 - Pyrococcus horikoshii ... 71 9e-12
pir||E75169 hypothetical protein PAB2019 - Pyrococcus abyssi (st... 71 2e-11
pir||E75005 probable haloacid dehalogenase (EC 3.8.1.-) PAB1316 ... 69 4e-11
>pir||A75103 phosphoglycolate phosphatase PAB1576 - Pyrococcus abyssi (strain
Orsay) >gi|5458638|emb|CAB50126.1| (AJ248286)
PHOSPHOGLYCOLATE PHOSPHATASE [Pyrococcus abyssi]
Length = 231
Score = 460 bits (1171), Expect = e-129
Identities = 231/231 (100%), Positives = 231/231 (100%)
Query: 1 MMLVILDLDDTLCNTWEALRIAVMKLVPTIIRMRKFRLIAYFITKRYERLEKLRDLHLLD 60
MMLVILDLDDTLCNTWEALRIAVMKLVPTIIRMRKFRLIAYFITKRYERLEKLRDLHLLD
Sbjct: 1 MMLVILDLDDTLCNTWEALRIAVMKLVPTIIRMRKFRLIAYFITKRYERLEKLRDLHLLD 60
Query: 61 FKGIFNRIMEDIYEDVDREEVKEILKLFDRFFFSSLKLYEDAEYFLKELKNLKAKIVLVT 120
FKGIFNRIMEDIYEDVDREEVKEILKLFDRFFFSSLKLYEDAEYFLKELKNLKAKIVLVT
Sbjct: 61 FKGIFNRIMEDIYEDVDREEVKEILKLFDRFFFSSLKLYEDAEYFLKELKNLKAKIVLVT 120
Query: 121 DSASSWQRKKLEVLGIENYFDAVIVSGDTGHTKLEPYNFKLAKRMFPREEIVFVVGDRDE 180
DSASSWQRKKLEVLGIENYFDAVIVSGDTGHTKLEPYNFKLAKRMFPREEIVFVVGDRDE
Sbjct: 121 DSASSWQRKKLEVLGIENYFDAVIVSGDTGHTKLEPYNFKLAKRMFPREEIVFVVGDRDE 180
Query: 181 TDMKGGKSIGAITILVRRGYFKGRRVRYADHVVNDLYEALEVIKNELKARA 231
TDMKGGKSIGAITILVRRGYFKGRRVRYADHVVNDLYEALEVIKNELKARA
Sbjct: 181 TDMKGGKSIGAITILVRRGYFKGRRVRYADHVVNDLYEALEVIKNELKARA 231
>pir||B71084 hypothetical protein PH0935 - Pyrococcus horikoshii
>gi|3257349|dbj|BAA30032.1| (AP000004) 246aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 246
Score = 369 bits (937), Expect = e-101
Identities = 172/229 (75%), Positives = 207/229 (90%)
Query: 1 MMLVILDLDDTLCNTWEALRIAVMKLVPTIIRMRKFRLIAYFITKRYERLEKLRDLHLLD 60
+MLVILDLDDTLCNTWEALR+A+++L P II RKF+LIAYF+TKRYE+LE +RD+HLLD
Sbjct: 18 LMLVILDLDDTLCNTWEALRLALIRLTPIIIMKRKFKLIAYFLTKRYEKLESIRDIHLLD 77
Query: 61 FKGIFNRIMEDIYEDVDREEVKEILKLFDRFFFSSLKLYEDAEYFLKELKNLKAKIVLVT 120
F+GIFNRIMEDIY D+D+EE+KE+L LFDR FF++LKLY+D FL ELK +KAK+ LVT
Sbjct: 78 FEGIFNRIMEDIYRDLDKEEIKEMLDLFDRAFFANLKLYDDVLPFLNELKQMKAKLALVT 137
Query: 121 DSASSWQRKKLEVLGIENYFDAVIVSGDTGHTKLEPYNFKLAKRMFPREEIVFVVGDRDE 180
DSASSWQR+KLEVLGI+ YFD +IVSGDTGHTKLEPYNF LA +MFP+E+ +FV+GDRD+
Sbjct: 138 DSASSWQRRKLEVLGIQRYFDKIIVSGDTGHTKLEPYNFYLATKMFPKEDKIFVIGDRDD 197
Query: 181 TDMKGGKSIGAITILVRRGYFKGRRVRYADHVVNDLYEALEVIKNELKA 229
TDMKGGK+IGA TILV+RGYFKGRR +YAD++VN+LYEALEVIK ELKA
Sbjct: 198 TDMKGGKAIGATTILVKRGYFKGRRAKYADYIVNNLYEALEVIKGELKA 246
>pir||D64479 hypothetical protein MJ1437 - Methanococcus jannaschii
>gi|1592085|gb|AAB99446.1| (U67584) L-2-haloalkanoic
acid dehalogenase isolog [Methanococcus jannaschii]
Length = 228
Score = 80.4 bits (195), Expect = 2e-14
Identities = 64/229 (27%), Positives = 113/229 (48%), Gaps = 16/229 (6%)
Query: 4 VILDLDDTLCNTWEALRIAVMKLVPTIIRMRKFRLIAYFITKRYERLEKLRDLHLLDFKG 63
++ DLDDTL N+ E + IA + V ++I + +E + + + D
Sbjct: 5 ILFDLDDTLYNSSEFVEIARREAVKSMIDAG--------LNIDFEEAMNILNKIIKDKGS 56
Query: 64 IFNRIMEDIYEDV----DREEVKEILKLFDRFFFSSLKLYEDAEYFLKELKNLKAKIVLV 119
+ + +D+ + V D + + + + + L+ Y L ELK + K+ ++
Sbjct: 57 NYGKHFDDLVKAVLGKYDPKIITTGIITYHNVKVALLRPYPHTIKTLMELKAMGLKLGVI 116
Query: 120 TDSASSWQRKKLEVLGIENYFDAVIVSGDTGHTK--LEPYNFKLAKRMFPREEIVFVVGD 177
TD + Q +KL LGI +FD VI S + G K LE + + L + EE V+ VGD
Sbjct: 117 TDGLTIKQWEKLIRLGIHPFFDDVITSEEFGLGKPHLEFFKYGLKRMGLKAEETVY-VGD 175
Query: 178 RDETDMKGGKSIGAITILVRRGYFKGRR-VRYADHVVNDLYEALEVIKN 225
R + D+K K +G IT+ + +G +K Y+D+ +N L E ++++KN
Sbjct: 176 RVDKDIKPAKELGMITVRILKGKYKDMEDDEYSDYTINSLQELVDIVKN 224
>gb|AAK42335.1| 2-haloalkanoic acid dehalogenase [Sulfolobus solfataricus]
Length = 222
Score = 78.0 bits (189), Expect = 9e-14
Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 24/236 (10%)
Query: 1 MMLVILDLDDTLCNT----WEALRIAVMKLVPTIIRMRKFRLIAYFITKRYERLEKLRDL 56
M + +DL +TL + E + A+ ++ + R F+ +A + K + ++ L
Sbjct: 1 MKTIFVDLGETLVHFKPRYHENIAYALKEIGYNVDERRVFKAVAKILGKHHYPSQEYGGL 60
Query: 57 HLLDFKGIFNRIMEDIYED---VDREEVKEILKLFDRFFFSSLKLYEDAEYFLKELKNLK 113
DF+ +F + +IY D + R K +L +LY+D+ FL+E K L
Sbjct: 61 SAFDFRELFYEL--NIYPDEQLITRLNSKNLLS-------GEYELYDDSITFLEEAKGLG 111
Query: 114 AKIVLVTDSASSWQRKKLEVLGIENYFDAVIVSGDTGHTKLEPYNFKLAKRMFPREEIVF 173
K+VLV+++ S K +E LGI+ YFD ++ S D K P F A + + I
Sbjct: 112 FKLVLVSNATRSIY-KIVEDLGIKKYFDGIVASCDLNIMKPHPKIFSYAMEIAKSDGI-- 168
Query: 174 VVGDRDETDMKGGKSIGAITILV-RRGYFKGRRVRYADHVVNDLYEALEVIKNELK 228
+GD E D+ G K G IL+ R G++ R ++ V++L EALE++K +L+
Sbjct: 169 HIGDIYEIDVIGAKRAGLEAILLDRLGFYPEIR----ENKVSNLLEALELVKEKLR 220
>pir||S74066 hypothetical protein c0135 - Sulfolobus solfataricus
>gi|1707765|emb|CAA69437.1| (Y08256) orf c01035
[Sulfolobus solfataricus]
Length = 222
Score = 78.0 bits (189), Expect = 9e-14
Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 24/236 (10%)
Query: 1 MMLVILDLDDTLCNT----WEALRIAVMKLVPTIIRMRKFRLIAYFITKRYERLEKLRDL 56
M + +DL +TL + E + A+ ++ + R F+ +A + K + ++ L
Sbjct: 1 MKTIFVDLGETLVHFKPRYHENIAYALKEIGYNVDERRVFKAVAKILGKHHYPSQEYGGL 60
Query: 57 HLLDFKGIFNRIMEDIYED---VDREEVKEILKLFDRFFFSSLKLYEDAEYFLKELKNLK 113
DF+ +F + +IY D + R K +L +LY+D+ FL+E K L
Sbjct: 61 SAFDFRELFYEL--NIYPDEQLITRLNSKNLLS-------GEYELYDDSITFLEEAKGLG 111
Query: 114 AKIVLVTDSASSWQRKKLEVLGIENYFDAVIVSGDTGHTKLEPYNFKLAKRMFPREEIVF 173
K+VLV+++ S K +E LGI+ YFD ++ S D K P F A + + I
Sbjct: 112 FKLVLVSNATRSIY-KIVEDLGIKKYFDGIVASCDLNIMKPHPKIFSYAMEIAKSDGI-- 168
Query: 174 VVGDRDETDMKGGKSIGAITILV-RRGYFKGRRVRYADHVVNDLYEALEVIKNELK 228
+GD E D+ G K G IL+ R G++ R ++ V++L EALE++K +L+
Sbjct: 169 HIGDIYEIDVIGAKRAGLEAILLDRLGFYPEIR----ENKVSNLLEALELVKEKLR 220
>pir||G71045 hypothetical protein PH1655 - Pyrococcus horikoshii
>gi|3258084|dbj|BAA30767.1| (AP000006) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 71.4 bits (172), Expect = 9e-12
Identities = 62/228 (27%), Positives = 111/228 (48%), Gaps = 8/228 (3%)
Query: 3 LVILDLDDTLCNTWEALRIAVMKLVPTIIRMRKFRLIAYFITKRYERLEKLRDLHLLDFK 62
++ DLDDTL +T + IA + +IR L F T E +E +++ + +F
Sbjct: 4 VIFFDLDDTLVDTSKLAEIARKNAIENMIR---HGLPVDFETAYSELIELIKE-YGSNFP 59
Query: 63 GIFNRIMEDIYEDVDREEVKEILKLFDRFFFSSLKLYEDAEYFLKELKNLKAKIVLVTDS 122
F+ ++ + + + + + + F+ L+ A L LK L ++ ++TD
Sbjct: 60 YHFDYLLRRLDLPYNPKWISAGVIAYHNTKFAYLREVPGARKVLIRLKELGYELGIITDG 119
Query: 123 ASSWQRKKLEVLGIENYFDAVIVSGDTGHTKLEPYNFKLAKRMF-PREEIVFVVGDRDET 181
Q +K+ L ++++F+ VI+S G K P FK A + F + E +VGDR +
Sbjct: 120 NPVKQWEKILRLELDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVKPEEALMVGDRLYS 179
Query: 182 DMKGGKSIGAITILVRRGYFKGRRV---RYADHVVNDLYEALEVIKNE 226
D+ G K +G T+ R G R + +YAD+ +++L LEV+ E
Sbjct: 180 DIYGAKRVGMKTVWFRYGKHSERELEYRKYADYEIDNLESLLEVLARE 227
>pir||E75169 hypothetical protein PAB2019 - Pyrococcus abyssi (strain Orsay)
>gi|5457946|emb|CAB49436.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 238
Score = 70.6 bits (170), Expect = 2e-11
Identities = 60/228 (26%), Positives = 112/228 (48%), Gaps = 8/228 (3%)
Query: 3 LVILDLDDTLCNTWEALRIAVMKLVPTIIRMRKFRLIAYFITKRYERLEKLRDLHLLDFK 62
++ DLDDTL +T + +A + +IR L F T E +E +++ + +F
Sbjct: 4 VIFFDLDDTLVDTTKLAELARRNAIENMIR---HGLPVDFETAYSELMELIKE-YGSNFP 59
Query: 63 GIFNRIMEDIYEDVDREEVKEILKLFDRFFFSSLKLYEDAEYFLKELKNLKAKIVLVTDS 122
F+ ++ + + + V + + F+ L+ A L L+ L ++ ++TD
Sbjct: 60 HHFDYLLRRLDLPYNPKWVSAGVIAYHNTKFAYLREVPGARKVLIRLRELGYRLGIITDG 119
Query: 123 ASSWQRKKLEVLGIENYFDAVIVSGDTGHTKLEPYNFKLAKRMFPRE-EIVFVVGDRDET 181
Q +K+ L I+++F+ VI+S G K P FK A + F + + +VGDR +
Sbjct: 120 NPVKQWEKILRLEIDDFFEHVIISDFEGVKKPHPKIFKKALKAFNVDAQEALMVGDRLYS 179
Query: 182 DMKGGKSIGAITILVRRGYFKGRRV---RYADHVVNDLYEALEVIKNE 226
D+ G K++G T+ + G + + YAD+ + L + L+VI+NE
Sbjct: 180 DIYGAKNVGMKTVWFKYGKYSKEELEYREYADYEIEKLQDLLKVIENE 227
>pir||E75005 probable haloacid dehalogenase (EC 3.8.1.-) PAB1316 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458997|emb|CAB50483.1| (AJ248288) 2-HALOALKANOIC
ACID DEHALOGENASE (EC 3.8.1.2 RELATED PROTEIN
[Pyrococcus abyssi]
Length = 229
Score = 69.1 bits (166), Expect = 4e-11
Identities = 57/191 (29%), Positives = 92/191 (47%), Gaps = 10/191 (5%)
Query: 45 KRYERLEKLRDLHLLDFKGIFNRIMEDIYEDVDREEVKEI-LKLFDRFFFSSLK------ 97
K E EKL + G R + DI E++ R+ +E K + F+ LK
Sbjct: 40 KILEEYEKLTREAFSAYAGKPYRPIRDIEEEIMRKISEEYGFKYPENFWEIHLKMHQEYG 99
Query: 98 -LYEDAEYFLKELKNLKAKIVLVTDSASSWQRKKLEVLGIENYFDAVIVSGDTGHTKLEP 156
LY + LKEL+ + ++TDS + + LE LG+ + FD++ S + G K P
Sbjct: 100 KLYPEVVEVLKELRQ-SYHVGMITDSDTEYLNAHLEALGVRDLFDSITTSEEAGFFKPHP 158
Query: 157 YNFKLA-KRMFPREEIVFVVGDRDETDMKGGKSIGAITILVRRGYFKGRRVRYADHVVND 215
F++A ++ + E VGD D G K++G I+IL+ R K D VV+D
Sbjct: 159 RIFEIALRKAGVKGEDAVYVGDNPVKDCGGAKNLGMISILLDRTGEKKDLWDRCDFVVSD 218
Query: 216 LYEALEVIKNE 226
L E ++++K +
Sbjct: 219 LREVIKIVKGQ 229
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.144 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81026491
Number of Sequences: 2977
Number of extensions: 3283162
Number of successful extensions: 11855
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11837
Number of HSP's gapped (non-prelim): 8
length of query: 231
length of database: 189,106,746
effective HSP length: 54
effective length of query: 177
effective length of database: 156,788,448
effective search space: 27751555296
effective search space used: 27751555296
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 164 (68.3 bits)