BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1577 (PAB1577) DE:Hypothetical protein
         (203 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75102 hypothetical protein PAB1577 - Pyrococcus abyssi (st...   394  e-109
pir||C71084 hypothetical protein PH0936 - Pyrococcus horikoshii ...   323  8e-88

>pir||H75102 hypothetical protein PAB1577 - Pyrococcus abyssi (strain Orsay)
           >gi|5458637|emb|CAB50125.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 203
           
 Score =  394 bits (1002), Expect = e-109
 Identities = 203/203 (100%), Positives = 203/203 (100%)

Query: 1   MSLKLELKRKALHMTGLSVPIIYLLFGREATLIFVSTFLVIFLALEPFRLVEELRDKVKR 60
           MSLKLELKRKALHMTGLSVPIIYLLFGREATLIFVSTFLVIFLALEPFRLVEELRDKVKR
Sbjct: 1   MSLKLELKRKALHMTGLSVPIIYLLFGREATLIFVSTFLVIFLALEPFRLVEELRDKVKR 60

Query: 61  KLGIPDGVMAKIEREIDGIAREHEKRGLGAHIYFTLAALIIVYFFPKEVTIGSISLATIG 120
           KLGIPDGVMAKIEREIDGIAREHEKRGLGAHIYFTLAALIIVYFFPKEVTIGSISLATIG
Sbjct: 61  KLGIPDGVMAKIEREIDGIAREHEKRGLGAHIYFTLAALIIVYFFPKEVTIGSISLATIG 120

Query: 121 DAMAAIVGKTYGRHRFENGKSVEGSLAYLITGLLILTPLVGLKMAFIGSLVGMIAEFYDI 180
           DAMAAIVGKTYGRHRFENGKSVEGSLAYLITGLLILTPLVGLKMAFIGSLVGMIAEFYDI
Sbjct: 121 DAMAAIVGKTYGRHRFENGKSVEGSLAYLITGLLILTPLVGLKMAFIGSLVGMIAEFYDI 180

Query: 181 PPDDNFSNQLAIALALYLAGVRA 203
           PPDDNFSNQLAIALALYLAGVRA
Sbjct: 181 PPDDNFSNQLAIALALYLAGVRA 203


>pir||C71084 hypothetical protein PH0936 - Pyrococcus horikoshii
           >gi|3257350|dbj|BAA30033.1| (AP000004) 202aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 202
           
 Score =  323 bits (820), Expect = 8e-88
 Identities = 160/202 (79%), Positives = 179/202 (88%)

Query: 1   MSLKLELKRKALHMTGLSVPIIYLLFGREATLIFVSTFLVIFLALEPFRLVEELRDKVKR 60
           MSLKLELKRKALHMTGLSVP+IYL  G+ A + FV  FL+IFLALEPFRL E LR KVK 
Sbjct: 1   MSLKLELKRKALHMTGLSVPLIYLALGKSAAITFVLIFLIIFLALEPFRLGEGLRIKVKE 60

Query: 61  KLGIPDGVMAKIEREIDGIAREHEKRGLGAHIYFTLAALIIVYFFPKEVTIGSISLATIG 120
           KLGIP+ V  KIEREIDGIARE EKRG+GAHIYFT+AAL+++Y FP+EV IGSIS+AT+G
Sbjct: 61  KLGIPEEVTEKIEREIDGIAREREKRGIGAHIYFTIAALLVIYLFPREVAIGSISVATLG 120

Query: 121 DAMAAIVGKTYGRHRFENGKSVEGSLAYLITGLLILTPLVGLKMAFIGSLVGMIAEFYDI 180
           DAMAAI+GK+YGRHRF+NGKSVEGSLAY ITGLLILTPLVGLKMA + SLVGMI EFY +
Sbjct: 121 DAMAAIIGKSYGRHRFKNGKSVEGSLAYFITGLLILTPLVGLKMALLASLVGMIVEFYGL 180

Query: 181 PPDDNFSNQLAIALALYLAGVR 202
           PPDDNFSNQLAIA+ LYLAGVR
Sbjct: 181 PPDDNFSNQLAIAITLYLAGVR 202


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.145    0.407 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68085914
Number of Sequences: 2977
Number of extensions: 2610637
Number of successful extensions: 8828
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8826
Number of HSP's gapped (non-prelim): 2
length of query: 203
length of database: 189,106,746
effective HSP length: 53
effective length of query: 150
effective length of database: 157,386,935
effective search space: 23608040250
effective search space used: 23608040250
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)