BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1579 (PAB1579) DE:Hypothetical protein
(275 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75102 hypothetical protein PAB1579 - Pyrococcus abyssi (st... 568 e-161
pir||E71084 hypothetical protein PH0938 - Pyrococcus horikoshii ... 452 e-126
pir||E70336 hypothetical protein aq_403 - Aquifex aeolicus >gi|2... 173 3e-42
gb|AAK41370.1| Conserved hypothetical protein [Sulfolobus solfat... 136 3e-31
pir||H72200 conserved hypothetical protein - Thermotoga maritima... 135 7e-31
>pir||F75102 hypothetical protein PAB1579 - Pyrococcus abyssi (strain Orsay)
>gi|5458635|emb|CAB50123.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 275
Score = 568 bits (1447), Expect = e-161
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MKKLKVYIPGIKFPSISVTGNYCYLNCAHCGRHYLEGMLKVTRKSLLERCVEMEREGYIG 60
MKKLKVYIPGIKFPSISVTGNYCYLNCAHCGRHYLEGMLKVTRKSLLERCVEMEREGYIG
Sbjct: 1 MKKLKVYIPGIKFPSISVTGNYCYLNCAHCGRHYLEGMLKVTRKSLLERCVEMEREGYIG 60
Query: 61 CLLSGGMDSRLKVPLDKFKDEIKAIKERTKLKINAHVGFVDESDLEWLKYVDVVSLDFVG 120
CLLSGGMDSRLKVPLDKFKDEIKAIKERTKLKINAHVGFVDESDLEWLKYVDVVSLDFVG
Sbjct: 61 CLLSGGMDSRLKVPLDKFKDEIKAIKERTKLKINAHVGFVDESDLEWLKYVDVVSLDFVG 120
Query: 121 DDDVIRRVYKINKSVKDYLGVLELLTENGIRVAPHITIGLDFGRIHWEFKAIDVLVNYPI 180
DDDVIRRVYKINKSVKDYLGVLELLTENGIRVAPHITIGLDFGRIHWEFKAIDVLVNYPI
Sbjct: 121 DDDVIRRVYKINKSVKDYLGVLELLTENGIRVAPHITIGLDFGRIHWEFKAIDVLVNYPI 180
Query: 181 DVLVLDVLIPTPGTEMENVPKVPVDKAIEVVKYAREKFSGELSIGCMRPFGEWRVEFDKK 240
DVLVLDVLIPTPGTEMENVPKVPVDKAIEVVKYAREKFSGELSIGCMRPFGEWRVEFDKK
Sbjct: 181 DVLVLDVLIPTPGTEMENVPKVPVDKAIEVVKYAREKFSGELSIGCMRPFGEWRVEFDKK 240
Query: 241 AILAGVDRITNPPRKVIEWAKRIRDVEIIYECCVM 275
AILAGVDRITNPPRKVIEWAKRIRDVEIIYECCVM
Sbjct: 241 AILAGVDRITNPPRKVIEWAKRIRDVEIIYECCVM 275
>pir||E71084 hypothetical protein PH0938 - Pyrococcus horikoshii
>gi|3257352|dbj|BAA30035.1| (AP000004) 238aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 238
Score = 452 bits (1150), Expect = e-126
Identities = 214/238 (89%), Positives = 233/238 (96%)
Query: 38 MLKVTRKSLLERCVEMEREGYIGCLLSGGMDSRLKVPLDKFKDEIKAIKERTKLKINAHV 97
MLKVTRKSLLERC+EME+EGY GCLLSGGMDSRLKVPLDKFKDEIKAIKE+TKLKINAHV
Sbjct: 1 MLKVTRKSLLERCMEMEKEGYTGCLLSGGMDSRLKVPLDKFKDEIKAIKEKTKLKINAHV 60
Query: 98 GFVDESDLEWLKYVDVVSLDFVGDDDVIRRVYKINKSVKDYLGVLELLTENGIRVAPHIT 157
GFVDESDLEWLKY+DVVSLDFVGD++VI+RVYKI+K V+DYL VL+LLTENGIRVAPHIT
Sbjct: 61 GFVDESDLEWLKYIDVVSLDFVGDNEVIKRVYKIDKKVEDYLRVLDLLTENGIRVAPHIT 120
Query: 158 IGLDFGRIHWEFKAIDVLVNYPIDVLVLDVLIPTPGTEMENVPKVPVDKAIEVVKYAREK 217
IGLDFG++HWEFKAID+LVNYPIDVLVLDVLIPTPGTEM NVPKVPVD+AI VVKYAREK
Sbjct: 121 IGLDFGKVHWEFKAIDILVNYPIDVLVLDVLIPTPGTEMANVPKVPVDEAIRVVKYAREK 180
Query: 218 FSGELSIGCMRPFGEWRVEFDKKAILAGVDRITNPPRKVIEWAKRIRDVEIIYECCVM 275
FSGELSIGCMRPFGEWRV+FD++AILAGVDRITNPPRK+IEWAK+IRDVEIIYECCVM
Sbjct: 181 FSGELSIGCMRPFGEWRVKFDREAILAGVDRITNPPRKIIEWAKKIRDVEIIYECCVM 238
>pir||E70336 hypothetical protein aq_403 - Aquifex aeolicus
>gi|2983076|gb|AAC06683.1| (AE000688) putative protein
[Aquifex aeolicus]
Length = 341
Score = 173 bits (433), Expect = 3e-42
Identities = 105/269 (39%), Positives = 155/269 (57%), Gaps = 7/269 (2%)
Query: 12 KFPSISVTGNYCYLNCAHCGRHYLEGMLKVTRKSLLERCVE-MEREGYIGCLLSGGMDSR 70
KF ISVTG C L C HC L M+ T L + E ++++G G L+SGG D
Sbjct: 59 KFVDISVTGRNCELMCDHCASKILWHMIPATTPEELVKVGEDLKKKGIEGVLISGGSDKN 118
Query: 71 LKVPLDKFKDEIKAIKERTKLKINAHVGFVDESDLEWLKY--VDVVSLDFVGDDDVIRRV 128
VPL F D +K +KE + HVG VDE +E LK VD V LD +GD++ I +V
Sbjct: 119 GFVPLWDFFDAMKYLKEELGFLLTCHVGLVDEDYVEKLKEANVDAVLLDIIGDNETIAQV 178
Query: 129 YKI-NKSVKDYLGVLELLTENGIRVAPHITIGLDFGRIHWEFKAIDVLVNYPIDVLVLDV 187
YK+ +KSV+DY L LL E G+R+ PH+ IGL +G+I E+ AID++ Y D LVL V
Sbjct: 179 YKLPHKSVEDYDRSLRLLKEAGLRIVPHVIIGLHYGKIKGEYNAIDMIAKYEPDALVLVV 238
Query: 188 LIPTPG-TEMENVPKVPVDKAIEVVKYAREKF-SGELSIGCMRPFGEWRVEFDKKAILAG 245
++P G + + +P +++ +V+ YAR+ + + IGC RP G RV+ D ++LAG
Sbjct: 239 VMPYYGKAKFQLLPPPSSEESAQVILYARKAVPNSPVVIGCARPAGADRVKLDAYSVLAG 298
Query: 246 VDRITNPPRKVIEWAKRIRDVEIIY-ECC 273
V+ I P ++ ++K + ++ CC
Sbjct: 299 VNGIAFPAEGIVTYSKSLGLEPVVSPNCC 327
>gb|AAK41370.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 301
Score = 136 bits (339), Expect = 3e-31
Identities = 90/291 (30%), Positives = 148/291 (49%), Gaps = 21/291 (7%)
Query: 1 MKKLKVYIPGIK------------FPSISVTGNYCYLNCAHCGRHYLEGMLKVTRKSLLE 48
M+ L +Y P +K + SISVTG YC NC HCGR LE M+ + + +E
Sbjct: 1 MRPLFLYAPNLKRYESEFLDSRKGWKSISVTGTYCAFNCKHCGRRVLESMIDGSTQGKIE 60
Query: 49 R-CVEMEREGYIGCLLSGGMDSRLKVPLDKFKDEIKAIKERTKLKINAHVGFVDESDLEW 107
+ +E G G +LSGG SR VP+ ++ + +K +R L I AH G V ++
Sbjct: 61 KEIMEAISRGDEGIILSGGSTSRGDVPIWRYSNLLKRYSDR--LTIIAHTGVVKNEEIA- 117
Query: 108 LKY----VDVVSLDFVGDDDVIRRVYKINKSVKDYLGVLELLTENGIRVAPHITIGLDFG 163
K+ V + LD V D+D I+ + +V DYL + L + I++ PH+ +GL
Sbjct: 118 RKFKESGVKIALLDMVSDNDAIKDILGQPFTVDDYLNSFKYLKKVNIKIVPHVILGLSKK 177
Query: 164 RIHWEFKAIDVLVNYPIDVLVLDVLIPTPGTEMENVPKVPVDKAIEVVKYAREKFSG-EL 222
+ + ++I +L D L++ L+P GT+M ++ I ++ AR+ F +
Sbjct: 178 GLEGDLESIRLLQEVNPDALIIVGLMPLVGTQMNASRPPTPEEIIVALRTARDTFPNIPI 237
Query: 223 SIGCMRPFGEWRVEFDKKAILAGVDRITNPPRKVIEWAKRIRDVEIIYECC 273
++GC RP G+ +E +K A+ +D I P + E+AK R++ + CC
Sbjct: 238 NLGCARPRGKSYLEVEKFAVDYDIDAIAFPEDETYEYAKSKREIFLSNACC 288
>pir||H72200 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982463|gb|AAD36939.1|AE001824_8 (AE001824)
conserved hypothetical protein [Thermotoga maritima]
Length = 249
Score = 135 bits (336), Expect = 7e-31
Identities = 84/237 (35%), Positives = 133/237 (55%), Gaps = 15/237 (6%)
Query: 16 ISVTGNYCYLNCAHCGRHYLEGMLKVTRKSLLERCVEMEREGYIGCLLSGGMDSRLKVPL 75
+SVTG +C LNC HCG HYL M+ V + + ++GY L+SGGM +P
Sbjct: 11 VSVTGAFCSLNCPHCGAHYLRHMISV------DEIPALVKKGYRSFLISGGMLPDGSIPF 64
Query: 76 DKFKDEIKAIKERTKLKINAHVGFVDESDLEWLKYVDVVSLDFVGDDDVIRRVYKINKSV 135
+K+ + +K +KE L N HVGF + L DVVS+DF GD+ V++ +Y + +
Sbjct: 65 EKYYEHLKELKESHGLLYNFHVGFQKSKVAKEL--ADVVSMDFFGDETVLKSIYGLALTP 122
Query: 136 KDYLGVLELLTENGIRVAPHITIGLDFGRIHWEFKAIDVLVNYPIDVLVLDVLIPTPGTE 195
++ L + EN V HIT+G+ G+I E KA+++L + D +VL+V IPTPGT+
Sbjct: 123 QEILDIAHFY-EN---VVFHITVGITGGKITHEEKALEIL-SQETDTVVLNVFIPTPGTK 177
Query: 196 MENVPKVPVDKAIEVVKYAREKFSGELSIGCMRPFGEWRVEFDKKAILAGVDRITNP 252
+ + +++ + AR+ F + +GCM+P GE+R + + + VD IT P
Sbjct: 178 FGKSFPPDLQEVVKLFEKARKLFK-RVILGCMQPRGEYRKKLQSE-LKDLVDVITKP 232
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.144 0.438
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108154361
Number of Sequences: 2977
Number of extensions: 4644958
Number of successful extensions: 17503
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17488
Number of HSP's gapped (non-prelim): 5
length of query: 275
length of database: 189,106,746
effective HSP length: 51
effective length of query: 224
effective length of database: 158,583,909
effective search space: 35522795616
effective search space used: 35522795616
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)