BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1581 (PAB1581) DE:Hypothetical protein
         (262 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75102 hypothetical protein PAB1581 - Pyrococcus abyssi (st...   544  e-154
pir||G71084 hypothetical protein PH0940 - Pyrococcus horikoshii ...   303  2e-81

>pir||D75102 hypothetical protein PAB1581 - Pyrococcus abyssi (strain Orsay)
           >gi|5458633|emb|CAB50121.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 262
           
 Score =  544 bits (1386), Expect = e-154
 Identities = 262/262 (100%), Positives = 262/262 (100%)

Query: 1   MRIAKIRDLYLEIPDVRYSFFTTPYTPHKLGTAVDVYFEDHALFPFEEGKLIDVRKIRTP 60
           MRIAKIRDLYLEIPDVRYSFFTTPYTPHKLGTAVDVYFEDHALFPFEEGKLIDVRKIRTP
Sbjct: 1   MRIAKIRDLYLEIPDVRYSFFTTPYTPHKLGTAVDVYFEDHALFPFEEGKLIDVRKIRTP 60

Query: 61  RHIPVREDYLMIFSIGDICLKVLHVDSSVKVGEKVFLGDEIGRLRLSGFFSPWTDKHAHF 120
           RHIPVREDYLMIFSIGDICLKVLHVDSSVKVGEKVFLGDEIGRLRLSGFFSPWTDKHAHF
Sbjct: 61  RHIPVREDYLMIFSIGDICLKVLHVDSSVKVGEKVFLGDEIGRLRLSGFFSPWTDKHAHF 120

Query: 121 ELRPCDDPYRARGGLIIYPILTELVKTVKGEEFEVVERKESYYMLKPLKKGKRGMTPFGN 180
           ELRPCDDPYRARGGLIIYPILTELVKTVKGEEFEVVERKESYYMLKPLKKGKRGMTPFGN
Sbjct: 121 ELRPCDDPYRARGGLIIYPILTELVKTVKGEEFEVVERKESYYMLKPLKKGKRGMTPFGN 180

Query: 181 VEGGVPHYRYGAILNGREGHILGFTVKPDEILPNGVGLFRANFSVLANGVPVRGISFYCN 240
           VEGGVPHYRYGAILNGREGHILGFTVKPDEILPNGVGLFRANFSVLANGVPVRGISFYCN
Sbjct: 181 VEGGVPHYRYGAILNGREGHILGFTVKPDEILPNGVGLFRANFSVLANGVPVRGISFYCN 240

Query: 241 DELVKLIGGEFEVGEIVRLRLD 262
           DELVKLIGGEFEVGEIVRLRLD
Sbjct: 241 DELVKLIGGEFEVGEIVRLRLD 262


>pir||G71084 hypothetical protein PH0940 - Pyrococcus horikoshii
           >gi|3257354|dbj|BAA30037.1| (AP000004) 192aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 192
           
 Score =  303 bits (767), Expect = 2e-81
 Identities = 140/190 (73%), Positives = 164/190 (85%)

Query: 71  MIFSIGDICLKVLHVDSSVKVGEKVFLGDEIGRLRLSGFFSPWTDKHAHFELRPCDDPYR 130
           MIFS+G+ICLKVLHV  S++ G+ V LGDEIG+LRLSGFFSPWTDKHAHFELRPC+DPYR
Sbjct: 1   MIFSLGEICLKVLHVQPSIEPGDSVSLGDEIGKLRLSGFFSPWTDKHAHFELRPCNDPYR 60

Query: 131 ARGGLIIYPILTELVKTVKGEEFEVVERKESYYMLKPLKKGKRGMTPFGNVEGGVPHYRY 190
           ARGGL+IYPILT +V+T +G EF+VVE+ E Y ML+PLKKGK+GMTPFG VEGGVPHYRY
Sbjct: 61  ARGGLVIYPILTGIVRTARGNEFKVVEKNERYAMLEPLKKGKKGMTPFGYVEGGVPHYRY 120

Query: 191 GAILNGREGHILGFTVKPDEILPNGVGLFRANFSVLANGVPVRGISFYCNDELVKLIGGE 250
           GAILNG E  +LG +VK + ILPNGVGLF+A+F VLANG  V+GIS YCNDE +KLIGG 
Sbjct: 121 GAILNGNEASLLGKSVKAERILPNGVGLFKADFKVLANGSIVKGISVYCNDEKIKLIGGN 180

Query: 251 FEVGEIVRLR 260
           FEV E+V L+
Sbjct: 181 FEVDEVVELK 190


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.148    0.450 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105031731
Number of Sequences: 2977
Number of extensions: 4750888
Number of successful extensions: 7667
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7665
Number of HSP's gapped (non-prelim): 2
length of query: 262
length of database: 189,106,746
effective HSP length: 49
effective length of query: 213
effective length of database: 159,780,883
effective search space: 34033328079
effective search space used: 34033328079
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 164 (68.3 bits)