BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1582 (PAB1582) DE:Hypothetical protein
(462 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st... 937 0.0
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 660 0.0
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ... 378 e-104
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ... 372 e-102
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st... 366 e-100
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha... 351 8e-96
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte... 346 4e-94
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st... 340 3e-92
pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (st... 323 2e-87
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st... 316 4e-85
pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii ... 288 8e-77
pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii ... 282 7e-75
pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (st... 267 2e-70
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ... 263 4e-69
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st... 262 5e-69
pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii ... 245 1e-63
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.] 207 2e-52
gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfat... 201 1e-50
pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (st... 159 8e-38
pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (st... 157 2e-37
pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (st... 134 3e-30
sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir... 89 1e-16
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 83 5e-15
pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii ... 80 5e-14
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 78 2e-13
pir||D71134 hypothetical protein PH0840 - Pyrococcus horikoshii ... 70 6e-11
>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
>gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 462
Score = 937 bits (2395), Expect = 0.0
Identities = 462/462 (100%), Positives = 462/462 (100%)
Query: 1 MFIIIMIRKFVNRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCS 60
MFIIIMIRKFVNRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCS
Sbjct: 1 MFIIIMIRKFVNRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCS 60
Query: 61 QRGYEKDLKRFSQEISSFIGAPVRFESFKDAFKFLRGQGKLLVIFDEFPYLIEADKGVIS 120
QRGYEKDLKRFSQEISSFIGAPVRFESFKDAFKFLRGQGKLLVIFDEFPYLIEADKGVIS
Sbjct: 61 QRGYEKDLKRFSQEISSFIGAPVRFESFKDAFKFLRGQGKLLVIFDEFPYLIEADKGVIS 120
Query: 121 EFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWF 180
EFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWF
Sbjct: 121 EFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWF 180
Query: 181 GKDFERLLRLYGVTWGIPKYMEFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTR 240
GKDFERLLRLYGVTWGIPKYMEFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTR
Sbjct: 181 GKDFERLLRLYGVTWGIPKYMEFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTR 240
Query: 241 YMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAKRGIYVI 300
YMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAKRGIYVI
Sbjct: 241 YMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAKRGIYVI 300
Query: 301 EDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGL 360
EDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGL
Sbjct: 301 EDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGL 360
Query: 361 PFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGL 420
PFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGL
Sbjct: 361 PFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGL 420
Query: 421 ENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENLNSNKKL 462
ENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENLNSNKKL
Sbjct: 421 ENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENLNSNKKL 462
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 660 bits (1684), Expect = 0.0
Identities = 310/456 (67%), Positives = 383/456 (83%), Gaps = 7/456 (1%)
Query: 1 MFIIIMIRKFVNRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCS 60
M IIIMIRKFVNRKREL+ LE+ +E+G L V+YGRRRVGKTALLRKFLE KRGIYFLCS
Sbjct: 1 MIIIIMIRKFVNRKRELETLEKLYEKGANLVVIYGRRRVGKTALLRKFLEEKRGIYFLCS 60
Query: 61 QRGYEKDLKRFSQEISSFIGAPVRFESFKDAFKFLRGQGKLLVIFDEFPYLIEADKGVIS 120
+RGYEKDLKRFSQE+S F G P+ FE F+DAF+FL QGKL+V+ DEFPYLIE+ K V+S
Sbjct: 61 RRGYEKDLKRFSQELSKFFGIPLSFEDFEDAFEFLSKQGKLVVVIDEFPYLIESYKPVVS 120
Query: 121 EFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWF 180
FQ IVD+VLEGSE+ +ILCGSS+GMME+++L YK+PLYGRA G++KVKPFRFFDMVEW+
Sbjct: 121 VFQRIVDLVLEGSEVMLILCGSSIGMMEKDVLGYKAPLYGRAQGIMKVKPFRFFDMVEWY 180
Query: 181 GKDFERLLRLYGVTWGIPKYMEFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTR 240
G+DFE+L+RLYGVTWG+P+YMEFF+ GSD+EII NFF+PS+FLFNEA+LLLMEELRNP
Sbjct: 181 GRDFEKLVRLYGVTWGVPRYMEFFREGSDEEIIRNFFDPSSFLFNEAKLLLMEELRNPAV 240
Query: 241 YMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAKRGIYVI 300
Y +IIEAIA+G TRL+EIA Y I+AKDL YL+ L LGIV+R PIT+R AKRG+YVI
Sbjct: 241 YGEIIEAIALGNTRLSEIANYSMIDAKDLPAYLKTLQELGIVKRITPITKRNAKRGVYVI 300
Query: 301 EDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGL 360
EDEYFRFY+RFV+P+YEEI+SLNPEPAI DF +NFN+YLG+TFEKV++EFL+ +
Sbjct: 301 EDEYFRFYYRFVNPYYEEIESLNPEPAIEDFRKNFNSYLGETFEKVSKEFLLAIG----- 355
Query: 361 PFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGL 420
+ +IGKWW + EEIDL+ALN EKK L VEVKW+ L E+EA+ +LK LE+K L+ L
Sbjct: 356 --DYPKIGKWWYKGEEIDLVALNEREKKALFVEVKWRGLKEREAKRILKRLEKKSMLINL 413
Query: 421 ENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENL 456
+ W K YG+IA+ ++ KE L+ EGWL+WDL+DF +L
Sbjct: 414 DGWIKDYGVIARRVEGKESLRDEGWLVWDLEDFNSL 449
>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
>gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 496
Score = 378 bits (960), Expect = e-104
Identities = 201/466 (43%), Positives = 297/466 (63%), Gaps = 15/466 (3%)
Query: 3 IIIMIRKFVNRKRELKVLERAWEEGFRLFVV-YGRRRVGKTALLRKFLENKRGIYFLCSQ 61
+++ + F++RK+EL +LE + G F+V YGRRRVGKTAL+ +FL G+Y L +
Sbjct: 32 LLVSKQLFIDRKKELGLLEERLKSGKAQFIVIYGRRRVGKTALILEFLRRHGGLYLLARE 91
Query: 62 RGYEKDLKRFSQEISSFIGA------PVRFESFKDAFKFL--RGQGKLLVIFDEFPYLIE 113
++L+RFS ++ + P+R S F++L + + ++ DEFPYL++
Sbjct: 92 TSEIENLERFSLRLAEYFNDSFLKKNPLR--SLDAFFEYLSTKAEKPFIIAIDEFPYLVK 149
Query: 114 ADKGVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRF 173
+K + S QE ++ L +I +I+ GSSV M ER +L YKSPLYGR + LK+KP F
Sbjct: 150 GNKALPSILQEYWEMKLSKKKIFLIVSGSSVSMTER-LLGYKSPLYGRRTAQLKLKPLDF 208
Query: 174 FDMVEWFGK-DFERLLRLYGVTWGIPKYM-EFFKTGSDDEIINNFFNPSAFLFNEARLLL 231
F+ E+ K E +R+YG+ G P Y+ EF S +E + ++F + L+ +A +L
Sbjct: 209 FNAREFLPKYSLEDFVRVYGILGGTPAYLLEFSDEKSLEENLKSYFRVDSLLYGDALFIL 268
Query: 232 MEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPIT-E 290
EEL P Y I+EAIA G T L EI G+E + YL VL +L +VRREVPIT
Sbjct: 269 REELDEPRNYFAIMEAIARGNTTLGEIVNETGLERATVGKYLSVLIDLDLVRREVPITAS 328
Query: 291 RKAKRGIYVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREF 350
RK+++G Y I D YF F+ R+V P+ + I+S N E + + + + Y G+ FE VA+EF
Sbjct: 329 RKSRKGRYYIADNYFAFWFRYVYPNADLIESGNGELLVDTVMDDIDHYTGEVFEGVAKEF 388
Query: 351 LIEVNKHGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKD 410
L+ +NK LPF+F +G+WW ++EEIDL+ALN EKKVL +EVKWK+L ++EARG+LKD
Sbjct: 389 LLRLNKSERLPFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGILKD 448
Query: 411 LERKGELVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENL 456
L+RK +LVGL+ W K+YGL+AK ++ K+ +K EGWL WDL+D +
Sbjct: 449 LKRKAKLVGLDEWGKHYGLVAKSVRGKDEIKEEGWLAWDLEDIHRM 494
>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
>gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 471
Score = 372 bits (945), Expect = e-102
Identities = 204/468 (43%), Positives = 291/468 (61%), Gaps = 19/468 (4%)
Query: 3 IIIMIRKFVNRKRELKVLERAWEEG-FRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQ 61
I++ I+KFV+R+REL LE + G L ++YGRRR+GKT LL F NK +YFL S+
Sbjct: 4 ILMSIQKFVDRERELAFLEERYASGNAELLIIYGRRRIGKTELLLHFARNKEHVYFLASE 63
Query: 62 RGYEKDLKRFSQEISSFIGAPV--RFESFKDAFKFL-----RGQGKLLV-IFDEFPYLIE 113
+ Y +L+ + + F+G + R E F D + L R QG+ +V I DEFPYLIE
Sbjct: 64 KPYRDNLRELQRMMGDFLGDRLFSRVE-FSDIDELLIEFSKRVQGRRVVLIIDEFPYLIE 122
Query: 114 ADKGVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRF 173
K V+S Q D+ L S++ +ILCGSSV ME E+L YKSPLYGR +G KV F
Sbjct: 123 HYKPVLSLIQRAWDMELSKSDLMLILCGSSVSSMETEVLGYKSPLYGRRTGQWKVGELPF 182
Query: 174 FDMVEWFGK-DFERLLRLYGVTWGIPKYMEFF--KTGSDDEIINNFFNPSAFLFNEARLL 230
+ + E+F E L+++YGV GIP Y+ F + D+ ++ + AFL+ EA +L
Sbjct: 183 WSLREFFPSYSTEELVKVYGVLGGIPAYLLQFNPEKNFDENVVEKVLSKGAFLYEEAEIL 242
Query: 231 LMEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITE 290
L EE+R P Y I++AIA G++R EI G++ +S YL VL LG+V REVP+T
Sbjct: 243 LKEEMREPANYFIILQAIASGRSRFGEIVNATGLDKSLVSKYLNVLEKLGMVEREVPVTA 302
Query: 291 RKA---KRGIYVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVA 347
+ KRG Y I D Y F+ R+V P+ +++ + +F Y+G FE++
Sbjct: 303 SRKEALKRGRYSITDNYLAFWFRYVLPNKSYLEAGLGKEIWERSKEDFKEYMGGVFERLL 362
Query: 348 REFLIEVNKHGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGV 407
R+ + F+F +G+WW ++EEIDL+ALN EKKVL +EVKWK+L ++EARG+
Sbjct: 363 RKPEVFTKL---TDFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGI 419
Query: 408 LKDLERKGELVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFEN 455
LKDLERK +LV L+NW+KYYGL+ K ++ KE L+ E +L+WDLKDFE+
Sbjct: 420 LKDLERKAKLVELDNWEKYYGLVTKSLEGKEKLREESYLVWDLKDFED 467
>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
>gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 469
Score = 366 bits (930), Expect = e-100
Identities = 195/458 (42%), Positives = 291/458 (62%), Gaps = 11/458 (2%)
Query: 10 FVNRKRELKVLERAWEEGFRLFVV-YGRRRVGKTALLRKFLENKRGIYFLCSQRGYEKDL 68
F++R+ EL +L+ E G F+V YGRRR+GKTAL+ + + GIY L + +L
Sbjct: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
Query: 69 KRFSQEISSFIGAPVR----FESFKDAFKFL--RGQGKLLVIFDEFPYLIEADKGVISEF 122
KRFS+ ++ + + F+++ F++L + +++V DEFPYL++ +K + S
Sbjct: 62 KRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASIL 121
Query: 123 QEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWFGK 182
QE D+ L S+I +I+CGSS+ MME+ +L YKSP+YGR + LK+KP FF ++ +
Sbjct: 122 QEYWDLKLSKSKIFLIICGSSITMMEK-LLGYKSPIYGRRTCQLKLKPMDFFSARKFLPR 180
Query: 183 -DFERLLRLYGVTWGIPKYM-EFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTR 240
E LR YG+ G P Y+ +F S +E + ++F P +FL+ +A +L EEL P
Sbjct: 181 YPIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQDALFILREELNEPRN 240
Query: 241 YMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITER-KAKRGIYV 299
Y I+EAIA G T L EI ++ + YL VL +L +VRREVPITE K+++G Y
Sbjct: 241 YFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGRYY 300
Query: 300 IEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGG 359
I D YF F+ R+V P+ + I++ + ++ + +F+ YL FE V R+FL+ +NK
Sbjct: 301 INDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKESL 360
Query: 360 LPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVG 419
L F++IG+WW + EEIDL+ALN +K VL VEV+WKEL E E R ++ L +K +LVG
Sbjct: 361 LTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQLVG 420
Query: 420 LENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENLN 457
LENW++YYGL+ K I+ KE L+SEGWL+WDLKDFE L+
Sbjct: 421 LENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELLD 458
>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
hypothetical protein MJECL04 - Methanococcus jannaschii
plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
jannaschii predicted coding region MJECL04
[Methanococcus jannaschii]
Length = 439
Score = 351 bits (892), Expect = 8e-96
Identities = 192/447 (42%), Positives = 280/447 (61%), Gaps = 13/447 (2%)
Query: 10 FVNRKRELKVL-ERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQRGYEKDL 68
FV+R+ ELK L E+ F V+YGRRR+GKT L K +EN+ IY+L + K
Sbjct: 2 FVDREEELKALNEKLDSNNFEFIVIYGRRRIGKTKLALKSVENREHIYYLAVEGDNLKHF 61
Query: 69 KRFSQEISSFIGAPVRFESFKDAFKFLRGQGKLLVIFDEFPYLIEADKGVISEFQEIVDI 128
KR++ ++ I E ++ F FL+ + ++I DEFP LI+ + V+S FQ IVDI
Sbjct: 62 KRYASKVEPTI--EYAKEDWEAYFNFLKDK---IIIIDEFPNLIKENPNVLSLFQRIVDI 116
Query: 129 VLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWFGKD-FERL 187
L+ ++ +I+ GSS+ MM ++LSYKSPLYGR +GVLK+KP +F + E+F K +E L
Sbjct: 117 HLKNTKTKLIILGSSISMMGEKVLSYKSPLYGRKTGVLKIKPLKFKHLKEFFPKAIWEEL 176
Query: 188 LRLYGVTWGIPKYMEFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTRYMQIIEA 247
+ +YG GIP Y+E K D + +FL E L+ E PT Y +I+EA
Sbjct: 177 VEIYGFADGIPYYLEKVKLPFWDYLDKEIKRVDSFLRYEVDFLMKYEFEEPTTYKKILEA 236
Query: 248 IAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITER-KAKRGIYVIEDEYFR 306
IA G L EI Y+G + DL+ YL+ L + + R+ PITE K+K+G Y I+D +
Sbjct: 237 IAFGNHTLGEIKNYLGFKHSDLTPYLKNLIEVEFIERQTPITESVKSKKGRYYIKDNFIA 296
Query: 307 FYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGLPFKFME 366
FY R++ P+ I+ + I + ++N YLG FEKVA+EFLIE+NK LPFKF++
Sbjct: 297 FYFRYIFPNLSAIEEGIFD--IEEIKADYNQYLGFVFEKVAKEFLIELNKMNKLPFKFLK 354
Query: 367 IGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGLENWQKY 426
IG+WW R EEIDL+ALN +KK L VEVKWK+L +++ + + +DL RK +LVGL++++KY
Sbjct: 355 IGRWWHRGEEIDLIALNDNDKKALFVEVKWKDLKDRDVKKIYRDLYRKSKLVGLDDYEKY 414
Query: 427 YGLIAKGIKCKELLKSEGWLLWDLKDF 453
Y ++ K I+ KE + LL+DL+DF
Sbjct: 415 YAIVGKKIESKE---NGDCLLFDLEDF 438
>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 458
Score = 346 bits (877), Expect = 4e-94
Identities = 188/457 (41%), Positives = 284/457 (62%), Gaps = 15/457 (3%)
Query: 10 FVNRKRELKVLERAWEEGFRLFVV-YGRRRVGKTALLRKFLENKRGIYFLCSQRGYEKDL 68
F++R+REL+ LER +E G F+V YGRRRVGKTALL +F+ GIY L + ++L
Sbjct: 2 FLDRERELQFLERRYEMGGPEFIVIYGRRRVGKTALLLEFISRHGGIYLLARETSNLENL 61
Query: 69 KRFSQEISSFIGAPVR----FESFKDAFKFLRGQG--KLLVIFDEFPYLIEADKGVISEF 122
KRFS +S + G F+++ ++L + +L+V+ DEFPYL++ D+ + S
Sbjct: 62 KRFSDRLSEYFGDDFLKRNPFQNWDAFLEYLNQKATERLVVVIDEFPYLVKGDRSLPSIL 121
Query: 123 QEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWF-G 181
QE D+ L I +I+CGSS+ MME+ +L YKSP+YGR +G + +KP F E+ G
Sbjct: 122 QEYWDLKLSNGRIFLIICGSSISMMEK-LLGYKSPIYGRRTGQINLKPVDFLHAREFLPG 180
Query: 182 KDFERLLRLYGVTWGIPKYM-EFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTR 240
E ++ YG+ G P ++ EF + + E + + + L+ +A +L EEL P
Sbjct: 181 YSLEDFIKAYGILGGSPAHLLEFDDSKTIKENLLEYLRSDSLLYQDAFFVLREELEEPRN 240
Query: 241 YMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPIT-ERKAKRGIYV 299
Y I+EA+A GKT L EI G+ ++ YL VL L V+RE+PIT RK++RG Y
Sbjct: 241 YFAIMEAVAAGKTSLGEIMNETGLSRATVAKYLSVLIELDFVKREIPITASRKSRRGRYY 300
Query: 300 IEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGG 359
I+D YF F+ R++ P+ + I+S + + + + YLG FE VA EFL ++
Sbjct: 301 IKDNYFAFWFRYIHPNIDFIESERRKELLELIIDDLPNYLGGIFENVAIEFLPLISNK-- 358
Query: 360 LPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVG 419
LPFK ++IG+WW ++EEIDL+A N E+K +L+EVKWK L + EA +LKDL RK +++
Sbjct: 359 LPFKPLKIGRWWHKNEEIDLVAFNEKEEKAILIEVKWKTLNKIEANKILKDLNRKSKILK 418
Query: 420 LENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENL 456
++ W++Y+G+IAK +K KE +K G L+WDL+D ENL
Sbjct: 419 MKEWEQYHGIIAKRVKDKEKIK--GGLIWDLEDIENL 453
>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
>gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 340 bits (862), Expect = 3e-92
Identities = 183/462 (39%), Positives = 278/462 (59%), Gaps = 17/462 (3%)
Query: 4 IIMIRKFVNRKRELKVLERAWEEG-FRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQR 62
+I++ +F++R+ EL+ L + W G L ++YGRRR+GKT LL+KFL GIY L +
Sbjct: 1 MILVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES 60
Query: 63 GYEKDLKRFSQEISSFIGAPVRFES----FKDAFKFLRGQG--KLLVIFDEFPYLIEADK 116
E L+ FS+ ++ + P E+ + F +L G+ +L+V+ DE Y+ ++ K
Sbjct: 61 --ETVLEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQK 118
Query: 117 GVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDM 176
+S Q+ D+ L ++I +ILCGS V ME ILS KSP+YGR +G KV+ FF+
Sbjct: 119 DFLSTLQKYWDLYLSDTKIMLILCGSLVSFMEG-ILSAKSPIYGRRTGAWKVEEMDFFNA 177
Query: 177 VEWFGKDFERLLRLYGVTWGIPKYMEFFKTGSD--DEIINNFFNPSAFLFNEARLLLMEE 234
++ D E ++ +Y V G+P+Y+ + D + + + A ++E + LL +E
Sbjct: 178 WKFHDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQE 237
Query: 235 LRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAK 294
LR+ +RY I+ AIA+G TR +IA IEAK L+ YL VLS +G + E P+ +
Sbjct: 238 LRDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKG-- 295
Query: 295 RGIYVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEV 354
R IY I D F F+ RFV P EI+ + + FN YLGK FE +AR+FL+ +
Sbjct: 296 RTIYRIRDNLFAFWFRFVYPRRSEIEM--GFDVVEEIKGEFNDYLGKAFEGIARQFLVRL 353
Query: 355 NKHGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERK 414
N G LPF+F +IG+WW R EE+D++A+N EKK +LV V+WK L K+ R +L DL RK
Sbjct: 354 NTLGRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRK 413
Query: 415 GELVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENL 456
EL+GLE W+K+Y ++A+ ++ KE L+ +WDL+DFE L
Sbjct: 414 SELIGLEGWEKHYAIVARDVQGKEDLEDNSH-IWDLRDFEEL 454
>pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (strain Orsay)
>gi|5458278|emb|CAB49767.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 451
Score = 323 bits (820), Expect = 2e-87
Identities = 181/445 (40%), Positives = 273/445 (60%), Gaps = 20/445 (4%)
Query: 14 KRELKVL-ERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQRGYEKDLKRFS 72
++ELK + E E F L V+YGRRRVGKT L+ + ++ +Y+L E D R
Sbjct: 6 EKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLA----VESDNLRHF 61
Query: 73 QEISSFIGAPVRF--ESFKDAFKFLRGQGKLLVIFDEFPYLIEADKGVISEFQEIVDIVL 130
+E + + V++ E ++ L+G+ ++I DEFP LI+ D V+S FQ +D+ L
Sbjct: 62 RETAERVFPEVKYVREDWESILHALKGK---IIIIDEFPNLIKEDPKVVSLFQRAIDLEL 118
Query: 131 EGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWFGK-DFERLLR 189
S IIL GSSV ++ ++LS KSPLYGR +G +K+KP FF + E+F + +E L+
Sbjct: 119 SNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASWEELVE 178
Query: 190 LYGVTWGIPKYMEFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTRYMQIIEAIA 249
+YG T GIP Y+ K + + +P +F +E LL E Y +I+EAIA
Sbjct: 179 IYGFTDGIPYYIIQVKLPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYRRILEAIA 238
Query: 250 MGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERK-AKRGIYVIEDEYFRFY 308
+GKT + EI + G+ D++ YLR L +V REVPITE+ +KRG Y + D + F+
Sbjct: 239 LGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLADNFLAFW 298
Query: 309 HRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGLPFKFMEIG 368
R++ P+ I+ +I + +++ YLG FEKVAR+FL+++N F +IG
Sbjct: 299 FRYIYPNLSRIEE--GTFSIEEIRGDYSQYLGWVFEKVARQFLLKLN------INFTKIG 350
Query: 369 KWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGLENWQKYYG 428
+WW + +EID++ALN K VL EVKWK+L EKEA +L++LE+KG+L GL++W+K YG
Sbjct: 351 RWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDWEKSYG 410
Query: 429 LIAKGIKCKELLKSEGWLLWDLKDF 453
LIA+ I+ KE LK +G+L+WDL+DF
Sbjct: 411 LIARNIEGKENLKGKGYLVWDLRDF 435
>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
>gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 316 bits (801), Expect = 4e-85
Identities = 181/465 (38%), Positives = 265/465 (56%), Gaps = 17/465 (3%)
Query: 6 MIRKFVNRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQRGYE 65
MI KFV+R+ ELK LE W L ++YGRRR GKT LL +F + K ++ + E
Sbjct: 1 MISKFVDREDELKALEDQWNSTPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRE 60
Query: 66 KDLKRFSQEISSFIGAPVRFESFKD---AFKFLRGQ--GKLLVIFDEFPYLIEADKGVIS 120
+ ++R +E++ + F SF D FK+L + K L+I DEF Y I++D+ ++S
Sbjct: 61 RQIRRLREELAEHFNDEL-FLSFNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVS 119
Query: 121 EFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWF 180
Q D + ++L GS +GMM E+LSY SPLYGR + +KP F+ +++F
Sbjct: 120 ALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFF 179
Query: 181 GKDFERLLRLYGVTWGIPKYMEFFKTGSDDE--IINNFFNPSAFLFNEARLLLMEELRNP 238
FE L +Y + GIP Y+ D I F F ++E +LL ELR
Sbjct: 180 DS-FEVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGELREL 238
Query: 239 TRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAKRGIY 298
Y I+ A A GKTR +EIA Y G+E + + YL L LG + RE+PI R KRGIY
Sbjct: 239 KTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIA-RNDKRGIY 297
Query: 299 VIEDEYFRFYHRFVSPHYE--EIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNK 356
++D + V + E+ ++ + D R + G FE VAREFL+E+N+
Sbjct: 298 KLKDPMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIY----GIRFEDVAREFLVELNR 353
Query: 357 HGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGE 416
G LPF+F IG+WW + EEID++A+N K++LL EVKWKEL ++EA+G+LKDL+RK +
Sbjct: 354 RGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFK 413
Query: 417 LVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENLNSNKK 461
L+ LE W + L+AK + K L+ G+ +WDL+D + L+ KK
Sbjct: 414 LMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDLK-LHFEKK 457
>pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii
>gi|3257241|dbj|BAA29924.1| (AP000003) 319aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 319
Score = 288 bits (730), Expect = 8e-77
Identities = 149/323 (46%), Positives = 206/323 (63%), Gaps = 7/323 (2%)
Query: 137 IILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWFGKDFERLLRLYGVTWG 196
+ILCGS V ME ILS KSP+YGR +G KV+ FFD++++ D E +++YGV G
Sbjct: 2 LILCGSLVSFMEG-ILSGKSPIYGRRTGTWKVEEMSFFDVLKFHPIDIETAIKIYGVFGG 60
Query: 197 IPKYMEFFKTGSD--DEIINNFFNPSAFLFNEARLLLMEELRNPTRYMQIIEAIAMGKTR 254
+P+Y + G D + I + + A ++E + LL EELR+ +RY I+ AI++G +R
Sbjct: 61 VPQYWVDYDPGKDFWENIKDLVLSKGAKYYDEPKYLLKEELRDVSRYFSILRAISLGYSR 120
Query: 255 LNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAKRGIYVIEDEYFRFYHRFVSP 314
+IA IE K L YL VL +G +R E PI R + +Y I + +F F+ RFV P
Sbjct: 121 FGQIADAARIETKSLGKYLNVLEEMGYIREEKPIVGRG--KTVYKINEHFFNFWFRFVFP 178
Query: 315 HYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGLPFKFMEIGKWWQRS 374
EI+ + + + FN YLG FE+++R+FLIE+NK LPF+F +IG+WW +
Sbjct: 179 RRSEIEM--GFDVVEEIKKEFNNYLGPVFEEISRQFLIEMNKRKKLPFRFTKIGRWWYKG 236
Query: 375 EEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGLENWQKYYGLIAKGI 434
EEIDL+ALN EKK L +EVKWK L KEA +LKDL+RK EL GL +W K YG+IAK I
Sbjct: 237 EEIDLVALNEDEKKALFIEVKWKNLERKEAYKILKDLKRKAELTGLHDWNKAYGIIAKSI 296
Query: 435 KCKELLKSEGWLLWDLKDFENLN 457
KE L+ EG+L WDL+DFE +N
Sbjct: 297 MEKEELREEGFLAWDLRDFELIN 319
>pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii
>gi|3257682|dbj|BAA30365.1| (AP000005) 320aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 320
Score = 282 bits (713), Expect = 7e-75
Identities = 149/319 (46%), Positives = 208/319 (64%), Gaps = 8/319 (2%)
Query: 146 MMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWFGK-DFERLLRLYGVTWGIPKYMEFF 204
M+ ++LSYKSPLYGR +G LK++P FF + E+F +E L+ +YG+T GIP Y+
Sbjct: 1 MITEKVLSYKSPLYGRRTGSLKLRPMNFFTLREFFPSCSWEELVEIYGMTDGIPFYIIQV 60
Query: 205 KTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGI 264
K + + NP +F +E LL E T Y +I+EAIA+GKT L EI + G+
Sbjct: 61 KPPFWELLEEELKNPISFFKDEVDFLLRYEFSEVTTYKRILEAIALGKTTLKEIKDFTGL 120
Query: 265 EAKDLSTYLRVLSNLGIVRREVPITERK-AKRGIYVIEDEYFRFYHRFVSPHYEEIDS-- 321
D++ YLR L ++ REVPITE+K +K+G Y + D + F+ RF+ P+ I+
Sbjct: 121 RNSDITPYLRNLIEADLIVREVPITEKKTSKKGRYYVLDNFLAFWFRFIYPNLSRIEEGI 180
Query: 322 LNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGLPFKFMEIGKWWQRSEEIDLLA 381
N + ++ R YLG FEK+AR+FLIE+NK LPFKF +IG+WW + EEID++A
Sbjct: 181 FNVDEIKGEYPR----YLGWVFEKIARQFLIELNKINKLPFKFEKIGRWWYKEEEIDIVA 236
Query: 382 LNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGLENWQKYYGLIAKGIKCKELLK 441
LN EKK LLVEVKWK L E+EAR +L+ L +K +L+GLE W+KYYGLIA+ IK KE L
Sbjct: 237 LNEREKKGLLVEVKWKTLKEREAREILEVLNKKSKLLGLEGWEKYYGLIAREIKRKEPLI 296
Query: 442 SEGWLLWDLKDFENLNSNK 460
+G+L+WDL+DFE + K
Sbjct: 297 EDGYLVWDLEDFEEIVKQK 315
>pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (strain Orsay)
>gi|5458553|emb|CAB50041.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 243
Score = 267 bits (676), Expect = 2e-70
Identities = 127/235 (54%), Positives = 173/235 (73%), Gaps = 1/235 (0%)
Query: 219 PSAFLFNEARLLLMEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSN 278
P++FLF EA+ LL EE R P Y ++EA+A KTR+NEIAQY +E K+ + YLR+L +
Sbjct: 3 PNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILED 62
Query: 279 LGIVRREVPITERKAKRGIYVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTY 338
L I++RE+PI +KAK+GIY D YF F+ RFV+P++EEI+S E A+ DF F+ Y
Sbjct: 63 LDILKRELPIG-KKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQY 121
Query: 339 LGKTFEKVAREFLIEVNKHGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKE 398
LG FE++ R+FLIE+ + G LPF F +IG+WW + EEID++ALN EKKVLLVEVKWKE
Sbjct: 122 LGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKE 181
Query: 399 LGEKEARGVLKDLERKGELVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDF 453
L ++EAR +L+DLERK + + L W+K Y L+AK ++ K LK EGW +WDL+DF
Sbjct: 182 LRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
>gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 456
Score = 263 bits (664), Expect = 4e-69
Identities = 159/452 (35%), Positives = 256/452 (56%), Gaps = 27/452 (5%)
Query: 9 KFVNRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQRGYEKDL 68
KF++R+ E+++LER WE V+YGRRRVGKT LL++F ++KR +F + E +
Sbjct: 2 KFIDRELEMEILEREWENRPSFVVLYGRRRVGKTRLLKEFSKDKRTFFFTFPEAIKEVQM 61
Query: 69 KRFSQEISSFIG----APVRFESFKDAFKFLRGQ-GKLLVIFDEFPYLIEADKGVISEFQ 123
K F + ++ F+G + + D ++L + L++ DEF Y I++++ ++S+ Q
Sbjct: 62 KEFKKTMAEFLGDDFARKLETRDWLDLLRYLAEKVDDCLIVLDEFTYAIKSERKILSDLQ 121
Query: 124 EIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWFGKD 183
D +L ++ +++ GS +GMM ++LSY SPLYGR + + +KPF + + +++F D
Sbjct: 122 RTWDDILSEKKVMLVISGSLLGMMWDDVLSYASPLYGRRTRSMNLKPFDYPNALKFF-SD 180
Query: 184 FERLLRLYGVTWGIPKYMEFF-KTGSDDEII-NNFFNPSAFLFNEARLLLMEELRNPTRY 241
E +R+Y + GIP Y++ + + +E I F + F ++E +LL EELR Y
Sbjct: 181 PEFGIRVYMLVGGIPSYLKLAGRYNTVEEFIREEFLSDYGFFYDEPYVLLGEELRELKTY 240
Query: 242 MQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAKRGIYVIE 301
I+ AIA G RL IA ++G+ + + Y+ L LG+V RE PI + K +Y I+
Sbjct: 241 FSILRAIAEGNRRLERIANFIGLPMRSVYPYVDTLVRLGLVERESPILGSR-KVSLYRIK 299
Query: 302 DEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGLP 361
D + P EI S + L + FE++A+EFL P
Sbjct: 300 DPMLLTWFTLTYPQMAEISSGTAK------LDSLYKVYSIRFEELAKEFLTLFR-----P 348
Query: 362 FKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGE-LVGL 420
+F +G+WW R EEID++AL + K L+EVKWK+L ++ A VL++LE K E L +
Sbjct: 349 IEFETLGRWWYRGEEIDIVALRK--DKTTLIEVKWKDLSKRSALRVLRELEEKSEKLHPI 406
Query: 421 ENWQKYYGLIAKGIKCKELLKSEGWLLWDLKD 452
EN GLIAK ++ KE L+ EG+L+WDL+D
Sbjct: 407 EN----IGLIAKSVRGKEKLREEGYLVWDLED 434
>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
>gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 472
Score = 262 bits (663), Expect = 5e-69
Identities = 165/470 (35%), Positives = 265/470 (56%), Gaps = 25/470 (5%)
Query: 1 MFIIIMIRKFVNRKRELKVLERAWE-EGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLC 59
M I ++ F +R+RELK L + +G VVYGRRRVGKTAL+R+FL+ K GIY
Sbjct: 1 MVIYLVGNMFYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFV 60
Query: 60 SQRGYEKDLKRFSQEI----SSFIGAPVR--FESFKDAFKFLRGQG---KLLVIFDEFPY 110
++ L+ F++E+ SS++ VR F S ++ F+FL KL++I DEF
Sbjct: 61 GEKDEALLLEDFTREVEMALSSYLPPYVRLRFSSLEELFEFLFDFSRDIKLVIILDEFQN 120
Query: 111 LIEADKGVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKP 170
+ S Q++ D+ E S + +I GS VGMM+R + K PL+GR +K+KP
Sbjct: 121 FRSVKPSLFSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKP 180
Query: 171 FRFFDMVEWFGKDFERLLRLYGVTWGIPKYMEFFK---TGSDDEIINN-FFNPSAFLFNE 226
F F+ + + ++ G+PKY+ + + G+ E + + FF+ + L E
Sbjct: 181 FDFWRAYNFVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNTIETLRSLFFDELSPLREE 240
Query: 227 A-RLLLMEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSN-LGIVRR 284
+L +E R Y I+EA+++G EI+ G++ + YL L+N + +
Sbjct: 241 GFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGK 300
Query: 285 EVPITE--RKAKRGIYVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKT 342
EVP TE RK ++ Y I DE+F F+ RFV + + ++ + D NF ++GK
Sbjct: 301 EVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKE 360
Query: 343 FEKVAREFLIEVNKHGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEK 402
+E++ REF+ ++ L F + +G+WW + EEID++A N E+KV L EVKW +L +
Sbjct: 361 YERIGREFIRRID----LGFSPLRVGRWWHKGEEIDVIAYN--EEKVALFEVKWSDLSKA 414
Query: 403 EARGVLKDLERKGELVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKD 452
A+ +L+DLERKGELV L ++ YGLI++ ++ KE L++ G+L++DL D
Sbjct: 415 RAKRLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
>pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii
>gi|3257252|dbj|BAA29935.1| (AP000003) 323aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 323
Score = 245 bits (618), Expect = 1e-63
Identities = 133/324 (41%), Positives = 195/324 (60%), Gaps = 11/324 (3%)
Query: 137 IILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWFGKDFERLLRLYGVTWG 196
++L GS +G+ME +LS+ SPLYGR + +++ F + +F E L + Y + G
Sbjct: 2 LVLSGSLMGIMEDNVLSHSSPLYGRRTAGFRLRSLGLFPSLRFFKSPIEGL-KFYMLLGG 60
Query: 197 IPKYMEFFKTGSD--DEIINNFFNPSAFLFNEARLLLMEELRNPTRYMQIIEAIAMGKTR 254
IP Y+ + + F P + ++E ++L EL+ Y I+ A++ G+ R
Sbjct: 61 IPAYLIIASRYETVGEFVEREFLTPEGYFYDEPYIVL-SELKELKTYFSILSAMSSGRRR 119
Query: 255 LNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAKRGIYVIEDEYFRFYHRFVSP 314
+EIA VG+E + + YL L LG V RE+PI RK KRG+Y I D + + P
Sbjct: 120 PSEIASEVGLEGRKIYPYLETLIRLGFVERELPIA-RKEKRGLYRISDPMLMSWFSLIYP 178
Query: 315 HYEEID--SLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGLPFKFMEIGKWWQ 372
+ EI+ ++ E + R F+ FE V+REFL+E+NK G LPF+F +IG+WW
Sbjct: 179 NRTEIELGTITLERVEKILQRIFSF----RFEDVSREFLVEMNKAGKLPFRFTKIGRWWY 234
Query: 373 RSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGLENWQKYYGLIAK 432
+ EEIDL+ALN E+K L +EVKWK+L E+E +G+LKDLE+K LVGL+ W K YGLI K
Sbjct: 235 KGEEIDLVALNEDEEKALFIEVKWKDLKEREVKGILKDLEKKAGLVGLDGWDKNYGLIEK 294
Query: 433 GIKCKELLKSEGWLLWDLKDFENL 456
I+ KE L+ E +L+WDLKDF+ L
Sbjct: 295 SIERKEKLREENYLVWDLKDFDAL 318
>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
Length = 350
Score = 207 bits (522), Expect = 2e-52
Identities = 137/353 (38%), Positives = 199/353 (55%), Gaps = 22/353 (6%)
Query: 2 FIIIMIRKFVNRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQ 61
+I +++ KFVNR EL+ L RA+ E L +VYGRRRVGKT L+ + L++ +Y LC +
Sbjct: 6 YITMIMHKFVNRSEELEKL-RAYLEKRSLIIVYGRRRVGKTRLIIEALKDTPHVYHLCKE 64
Query: 62 RGYEKDLKRFSQEI------SSFIGAPVRFESFKDAFKFLRGQGKLLVIFDEFPYLIEAD 115
+ L S+++ + F+ +P SF + F+ L G G LV+ DEFP L++
Sbjct: 65 EEPRETLVSLSKKLYHATGDAQFLESPP--SSFDELFELLGGIGITLVL-DEFPLLVKNY 121
Query: 116 KGVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFD 175
++ QE D GS ++LCGSSV MM + + Y SP++GR + +KVKP F
Sbjct: 122 PRILGLLQEYWDFGEGGS---VVLCGSSVSMM-KGLTDYGSPIHGRRTISVKVKPLEFRH 177
Query: 176 MVEWF-GKDFERLLRLYGVTWGIPKYMEFFKTGS--DDEIINNFFNPSAFLFNEARLLLM 232
+ E+F G E L+R YGV GIP+Y+ F ++ +I FF +L+ EA LLL
Sbjct: 178 VGEFFPGYSPEELVRAYGVLDGIPEYLLRFDPSQSVEENVIREFFG-RGYLYEEAELLLR 236
Query: 233 EELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPI---- 288
ELR+ + Y I+EAIA G T NEI G++ LS YL L L +V+RE P+
Sbjct: 237 YELRDLSTYNTILEAIAAGYTSFNEIKTKTGMDGSKLSRYLSTLEELELVKREYPVLPGA 296
Query: 289 TERKAKRGIYVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGK 341
+R+ K Y + D YF FY+ FV P EEI+ + + +F R FN YLG+
Sbjct: 297 AKRRRKGARYGLSDNYFAFYYSFVYPFKEEIELGLLDVPLENFRRKFNRYLGR 349
>gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 420
Score = 201 bits (506), Expect = 1e-50
Identities = 143/432 (33%), Positives = 229/432 (52%), Gaps = 39/432 (9%)
Query: 5 IMIRKFVNRKRELKVLE-RAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQRG 63
++ VNR+REL+ L+ R L ++YGRRR+GKT L+ + IY+L +++
Sbjct: 1 MIFMNMVNRERELQALKKRLSSNDLELIIIYGRRRIGKTFLIINAVNGYDFIYYLATEKN 60
Query: 64 YEKDLKRFSQEISSFIGAPVRFESFKDAFKFLRGQGKLLVIFDEFPYLIEADKGVISEFQ 123
+ K ++ S + E ++ F +LR + ++I DEFPY+I+ D+ ++S FQ
Sbjct: 61 NLRKFKELTE--SKYEDIKYVKEDWEAIFHYLRDK---IIIIDEFPYMIKEDESILSTFQ 115
Query: 124 EIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDMVEWFGKD 183
+IVD L+GS+ +IL GSS+ MME + +SYKSPLYGR + +++K +F D+ + F
Sbjct: 116 KIVDETLKGSKTKLILLGSSISMME-DAISYKSPLYGRRTASIELKELKFKDL-KGFNFS 173
Query: 184 FERLLRLYGVTWGIPKYMEFFKTGSDDEIINNFFNPSAFLFNEARLLLMEELRNPTRYMQ 243
+ +YG G+P Y+ KT I +F+ +E +L E Y +
Sbjct: 174 LIDAIHVYGFAGGVPFYLTKAKTPFLKWINAELKEVDSFIKDEIDFMLRYEFSEIGTYKE 233
Query: 244 IIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAKRGIYVIEDE 303
I+ AI+ GK L EI +V I D+S+YL L +GI+ +E P +K R Y I+D
Sbjct: 234 ILHAISSGKNTLGEIKDFVRISG-DVSSYLNKLEKIGIIGKEFPYKMKKGAR--YYIKDN 290
Query: 304 YFRFYHRFVSPHYEEIDSLNPEPAIRDFLRN-FNTYLGKTFEKVAREFLIEVNKHGGLPF 362
+ F+ F+ P+ I E I + + +N YLG+ FEK+ARE++ +V K
Sbjct: 291 FTLFWFTFIYPNLSLI-----EEGIYEIKEDEYNVYLGRIFEKIAREYVEDVYK------ 339
Query: 363 KFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKE--LGEKEARGVLKDLERKGELVGL 420
+++ + W + EID+ + E KW E GEK VL +L+RK E +GL
Sbjct: 340 --VKVERLWFKDVEIDIYG------DGIAGECKWSEGINGEK----VLYELKRKVEDLGL 387
Query: 421 ENWQKYYGLIAK 432
+ K Y + AK
Sbjct: 388 D--VKKYIIFAK 397
>pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (strain Orsay)
>gi|5458874|emb|CAB50361.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 157
Score = 159 bits (397), Expect = 8e-38
Identities = 75/158 (47%), Positives = 108/158 (67%), Gaps = 3/158 (1%)
Query: 299 VIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHG 358
+I D YF F+ R+V P+ +++ E +FN YLG FEK+ R + + G
Sbjct: 1 MINDNYFAFWFRYVLPNKVYLEAGLAEDVWERSKDDFNIYLGLIFEKLVRNPEVFLRLTG 60
Query: 359 GLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELV 418
F F ++G+WW+R EE+++LALN EKK LL+EVKWKEL ++EA+G+L+DL RK ELV
Sbjct: 61 ---FHFTKLGRWWRRGEEVNVLALNEREKKALLIEVKWKELSKREAKGILRDLGRKAELV 117
Query: 419 GLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENL 456
GL++W+++YG++AK I E L+ EGWL WDL+DFE L
Sbjct: 118 GLDSWKRFYGVVAKKIDDMEELREEGWLAWDLRDFEGL 155
>pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (strain Orsay)
>gi|5458875|emb|CAB50362.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 157 bits (393), Expect = 2e-37
Identities = 87/206 (42%), Positives = 126/206 (60%), Gaps = 6/206 (2%)
Query: 97 GQGKLLVIFDEFPYLIEADKGVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKS 156
G G++++I DEFP L+E + V+S Q+ D+ L + I +I+ GSSV +ME EIL+YKS
Sbjct: 8 GDGRVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKS 67
Query: 157 PLYGRASGVLKVKPFRFFDMVEWF-GKDFERLLRLYGVTWGIPKYMEFFKTGS--DDEII 213
PLYGR +G ++ FF + E+ G E L++++GVT IP Y+ F + D+ ++
Sbjct: 68 PLYGRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVV 127
Query: 214 NNFFNPSAFLFNEARLLLMEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYL 273
AFL+ EA LL EELR P Y I++AIA G+ R EI G++ +S YL
Sbjct: 128 ERVLFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYL 187
Query: 274 RVLSNLGIVRREVPIT---ERKAKRG 296
VL LGIV+REVP+T + +KRG
Sbjct: 188 TVLQRLGIVKREVPVTATMKEVSKRG 213
>pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (strain Orsay)
>gi|5458554|emb|CAB50042.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 207
Score = 134 bits (333), Expect = 3e-30
Identities = 75/195 (38%), Positives = 116/195 (59%), Gaps = 8/195 (4%)
Query: 28 FRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQRGYEKDLKRFSQEISSFIGAPV-RFE 86
F L +V GRRR+GK+ L+++FL+ KR I +R +E +L + ++ + + P F
Sbjct: 10 FTLVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFNIPTPNFS 69
Query: 87 SFKDAFKFLRGQGKLLVIFDEFPYLIEADKGVISEFQEIVDIVLEGSEITIILCGSSVGM 146
+F DAF+F+ Q K ++ YL+ V +EFQ VD +LE S I +IL SS+G+
Sbjct: 70 TFSDAFRFVASQSKERLV----AYLLRYSD-VEAEFQSTVDEILEESNIMLILSASSMGL 124
Query: 147 MEREILSYKSPLYGRASGVLKVKPFRFFDMVEWF-GKDFERLLRLYGVTWGIPKYMEFFK 205
++R Y S LYGR+ L ++P +F + EWF G E ++LY VT GIP+Y+E F+
Sbjct: 125 LKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYLELFE 184
Query: 206 -TGSDDEIINNFFNP 219
++EI NFF+P
Sbjct: 185 GRNVEEEIKTNFFDP 199
>sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir||A64353 hypothetical
protein MJ0425 - Methanococcus jannaschii
>gi|1591128|gb|AAB98412.1| (U67494) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 140
Score = 88.9 bits (217), Expect = 1e-16
Identities = 56/145 (38%), Positives = 80/145 (54%), Gaps = 12/145 (8%)
Query: 312 VSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKHGGLPFKFMEIGKWW 371
V P+ +++ N + L + N Y GK FE + E L K + F + KWW
Sbjct: 5 VYPNMADLEIGNVKEVYNKILASLNEYYGKMFENLVFEML----KLKIIDFGQKSVAKWW 60
Query: 372 QRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERKGELVGLENWQKYYGLIA 431
+ EEID+LA N K++ EVKWK+L KEA+G+L+DLERK + V + ++ Y +IA
Sbjct: 61 HKGEEIDVLAYNNN--KMIAFEVKWKDLSFKEAKGILRDLERKLDKVDFDGEKECY-IIA 117
Query: 432 KGIKCKELLKSEGWLLWDLKDFENL 456
K I+ KE LK+ DL D E L
Sbjct: 118 KSIEGKEKLKA-----LDLMDLEKL 137
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 83.5 bits (203), Expect = 5e-15
Identities = 86/299 (28%), Positives = 136/299 (44%), Gaps = 51/299 (17%)
Query: 12 NRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLC----SQRGY--- 64
+R+ E + LE + E + L ++ G RRVGK++LLR FL + GI C ++RG+
Sbjct: 16 DREEEFRKLEESLEN-YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITR 74
Query: 65 EKDLKRFSQEISSFIGAPVRFE---------------SFKDAFKFLRG----QGKLLVIF 105
E+ +K IS F +F+ S ++ F+ L G+ +V F
Sbjct: 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAF 134
Query: 106 DEFPYL----IEADKGVISEFQEIVDIVLEGSEITIILCGSSVGMME--REILSYKSPLY 159
DE YL K +++ F D + + IIL GS VG++ +I Y+SPLY
Sbjct: 135 DEAQYLRFYGSRGGKELLALFAYAYDSL---PNLKIILTGSEVGLLHDFLKITDYESPLY 191
Query: 160 GRASGVLKVKPFRFFDMVEWFGKDF---------ERLLRLYGVTWGIPKYMEFFKTGSDD 210
GR +G + VKPF VE+ + F + + GIP ++ F G +
Sbjct: 192 GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVF--GVEY 249
Query: 211 EIINNFFNPSAFLFNEARLLLMEEL----RNPTRYMQIIEAIAMGKTRLNEIAQYVGIE 265
+F A+ L+M EL R RY+ I+ AIA+G R + I Y+ ++
Sbjct: 250 LRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIRDYLAVK 308
>pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii
>gi|3257255|dbj|BAA29938.1| (AP000003) 103aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 103
Score = 80.0 bits (194), Expect = 5e-14
Identities = 41/108 (37%), Positives = 62/108 (56%), Gaps = 9/108 (8%)
Query: 298 YVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEVNKH 357
Y I D Y+ F+ RFV P+ + ++ + A+ R++N Y+G+ FEK + +FL +
Sbjct: 3 YEIADNYYAFWFRFVYPNRKLVERELYKEALELVKRDYNHYMGRVFEKASLDFLWK---- 58
Query: 358 GGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEAR 405
F F G+WW R EEID++ + RG EVKWK+L E+EAR
Sbjct: 59 ---RFAFERAGRWWSREEEIDVVGVKRG--MAYFFEVKWKDLSEREAR 101
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 78.4 bits (190), Expect = 2e-13
Identities = 80/299 (26%), Positives = 136/299 (44%), Gaps = 51/299 (17%)
Query: 12 NRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLC----SQRGY--- 64
+R++E K LE++ E+ + + ++ G RRVGK++LL+ +L GI C +RG+
Sbjct: 16 DREKEFKKLEKSIED-YPMTLLLGIRRVGKSSLLKAYLSENPGILIDCRELYGERGHITR 74
Query: 65 --------------EKDLKRFSQEIS-SFIGAPVRFESFKDAFKFL----RGQGKLLVIF 105
+K L RF + F+ + S D F+ L + GK ++ F
Sbjct: 75 IDLIRKLQERGNIVQKLLSRFKVSLDLKFLKIEPKEVSLMDIFESLNEIGKKMGKFVLAF 134
Query: 106 DEFPYL----IEADKGVISEFQEIVDIVLEGSEITIILCGSSVGMME--REILSYKSPLY 159
DE YL K +++ F D + + I+L GS VG++ I Y+SPLY
Sbjct: 135 DEAQYLRFYGSRGGKDLLALFAYAYDNL---ENLKIVLTGSEVGLLHDFLGINDYESPLY 191
Query: 160 GRASGVLKVKPFRFFDMVEWFGKDF---------ERLLRLYGVTWGIPKYMEFFKTGSDD 210
GR +G + V+PF E+ F E + + + GIP ++ F G +
Sbjct: 192 GRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEIIEKAIEMLDGIPGWLVLF--GVEY 249
Query: 211 EIINNFFNPSAFLFNEARLLLMEELR----NPTRYMQIIEAIAMGKTRLNEIAQYVGIE 265
++ F A+ L++ ELR RY++I+ IA+G R + I Y+ ++
Sbjct: 250 MREKDYEKAMKRTFEVAKGLILGELRELEKRSRRYLEILRGIALGYNRWSLIRDYLAVK 308
>pir||D71134 hypothetical protein PH0840 - Pyrococcus horikoshii
>gi|3257251|dbj|BAA29934.1| (AP000003) 117aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 117
Score = 69.9 bits (168), Expect = 6e-11
Identities = 38/96 (39%), Positives = 57/96 (58%), Gaps = 4/96 (4%)
Query: 6 MIRKFVNRKRELKVLERAWEEGFRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQRGYE 65
MI +F++RKREL +LER W+ V+YGRRRVGKT LL +F + K+ ++ + E
Sbjct: 1 MISQFIDRKRELAILEREWKNTPSFVVIYGRRRVGKTRLLVEFSKGKKVFFYTFMEGTKE 60
Query: 66 KDLKRFSQEISSFIGAPVRFESFKD---AFKFLRGQ 98
+K ++E+ F + F SF D FK+L G+
Sbjct: 61 SQVKSLAKELVDFFNDEI-FLSFSDWYPLFKYLSGK 95
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.144 0.427
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173533905
Number of Sequences: 2977
Number of extensions: 7771803
Number of successful extensions: 18196
Number of sequences better than 1.0e-10: 26
Number of HSP's better than 0.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 18080
Number of HSP's gapped (non-prelim): 27
length of query: 462
length of database: 189,106,746
effective HSP length: 53
effective length of query: 409
effective length of database: 157,386,935
effective search space: 64371256415
effective search space used: 64371256415
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 167 (69.5 bits)