BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1584 (PAB1584) DE:Hypothetical protein
         (164 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75100 hypothetical protein PAB1584 - Pyrococcus abyssi (st...   341  3e-93
pir||F71072 hypothetical protein PH1273 - Pyrococcus horikoshii ...   305  1e-82
sp|Q58269|Y859_METJA HYPOTHETICAL PROTEIN MJ0859 >gi|2128547|pir...    82  3e-15

>pir||E75100 hypothetical protein PAB1584 - Pyrococcus abyssi (strain Orsay)
           >gi|5458618|emb|CAB50106.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 164
           
 Score =  341 bits (865), Expect = 3e-93
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MSRLPQLYVEVPKEECLEGRKVKHECIIIQDNLEVKLGEGDEIPDFVDLDRAKFLAKEIY 60
           MSRLPQLYVEVPKEECLEGRKVKHECIIIQDNLEVKLGEGDEIPDFVDLDRAKFLAKEIY
Sbjct: 1   MSRLPQLYVEVPKEECLEGRKVKHECIIIQDNLEVKLGEGDEIPDFVDLDRAKFLAKEIY 60

Query: 61  DRFHFYVDQYEHRMKVDAIIVYPDRRTKIYLKKGDELLLLPVEGYVVTLIADVGNRVRKG 120
           DRFHFYVDQYEHRMKVDAIIVYPDRRTKIYLKKGDELLLLPVEGYVVTLIADVGNRVRKG
Sbjct: 61  DRFHFYVDQYEHRMKVDAIIVYPDRRTKIYLKKGDELLLLPVEGYVVTLIADVGNRVRKG 120

Query: 121 DAFAAVTTRKGEVHYLKPPRPGTVVYIDEFTNRPHYVYYILPEL 164
           DAFAAVTTRKGEVHYLKPPRPGTVVYIDEFTNRPHYVYYILPEL
Sbjct: 121 DAFAAVTTRKGEVHYLKPPRPGTVVYIDEFTNRPHYVYYILPEL 164


>pir||F71072 hypothetical protein PH1273 - Pyrococcus horikoshii
           >gi|3257693|dbj|BAA30376.1| (AP000005) 182aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 182
           
 Score =  305 bits (774), Expect = 1e-82
 Identities = 140/163 (85%), Positives = 157/163 (95%)

Query: 1   MSRLPQLYVEVPKEECLEGRKVKHECIIIQDNLEVKLGEGDEIPDFVDLDRAKFLAKEIY 60
           M RLPQL+VEV +EECLEG KVK+ECIIIQDN+EVKL EG+ +PDF++++RAKFLAKEIY
Sbjct: 19  MGRLPQLFVEVEREECLEGDKVKYECIIIQDNIEVKLKEGERVPDFINIERAKFLAKEIY 78

Query: 61  DRFHFYVDQYEHRMKVDAIIVYPDRRTKIYLKKGDELLLLPVEGYVVTLIADVGNRVRKG 120
           DRFHFYVDQYEH+M+VDAIIVYPDRRTK+YL+KGDEL+LLPVEGYVVTLIADVGNRVRKG
Sbjct: 79  DRFHFYVDQYEHKMRVDAIIVYPDRRTKMYLRKGDELMLLPVEGYVVTLIADVGNRVRKG 138

Query: 121 DAFAAVTTRKGEVHYLKPPRPGTVVYIDEFTNRPHYVYYILPE 163
           D FAA+TTRKGEVHYLKPP+PGTVVYIDEFTNRPHYVYYILPE
Sbjct: 139 DPFAAITTRKGEVHYLKPPKPGTVVYIDEFTNRPHYVYYILPE 181


>sp|Q58269|Y859_METJA HYPOTHETICAL PROTEIN MJ0859 >gi|2128547|pir||C64407 hypothetical
           protein MJ0859 - Methanococcus jannaschii
           >gi|1591544|gb|AAB98874.1| (U67530) M. jannaschii
           predicted coding region MJ0859 [Methanococcus
           jannaschii]
           Length = 164
           
 Score = 82.3 bits (200), Expect = 3e-15
 Identities = 62/169 (36%), Positives = 86/169 (50%), Gaps = 25/169 (14%)

Query: 3   RLPQLYVEVPKEECLEGRKVKHECIIIQDNLEVKLGEGDEIPDFVDLDR-----AKFLAK 57
           R+P+LYVE  ++   EGRKV  E              G ++  F+D D       K L +
Sbjct: 5   RIPRLYVENAEKH--EGRKVVIE-------------NGGKVIKFLDKDEEYEGDGKVLYQ 49

Query: 58  EIYDRFHFYVDQYEHRMKVDAIIVYP--DRRTKIYLKKGDELLLLPVEGYVVTLIADVGN 115
            IYD F  YV      +  D II Y     R   Y+KKG +LL +P EGY V  I D G 
Sbjct: 50  VIYDDFDNYV--LMGTVTKDMIIEYEVGGVRQITYIKKGTKLLEIPAEGYKVYPIVDFGC 107

Query: 116 RVRKGDAFAAVTTRKGEVHYLKPPRPGTVVYIDEF-TNRPHYVYYILPE 163
           R+  G   AA+ +RKG++ ++  P  G V+++ E    R +YV+YILPE
Sbjct: 108 RILGGHRIAALQSRKGDIRFVNTPVNGIVLFLKEVPAKRENYVFYILPE 156


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.145    0.432 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65478313
Number of Sequences: 2977
Number of extensions: 2649301
Number of successful extensions: 4924
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4921
Number of HSP's gapped (non-prelim): 3
length of query: 164
length of database: 189,106,746
effective HSP length: 50
effective length of query: 114
effective length of database: 159,182,396
effective search space: 18146793144
effective search space used: 18146793144
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)