BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1586 (PAB1586) DE:Hypothetical protein
(765 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75100 hypothetical protein PAB1586 - Pyrococcus abyssi (st... 1546 0.0
pir||D71072 hypothetical protein PH1271 - Pyrococcus horikoshii ... 913 0.0
pir||B75059 probable transmembrane oligosaccharyl transferase PA... 812 0.0
pir||C71248 hypothetical protein PH0242 - Pyrococcus horikoshii ... 109 1e-22
pir||E75212 oligosaccharyl transferase PAB2202 - Pyrococcus abys... 105 2e-21
gb|AAK41316.1| Oligosaccharyl transferase STT3 subunit (B5) (int... 88 4e-16
>pir||C75100 hypothetical protein PAB1586 - Pyrococcus abyssi (strain Orsay)
>gi|5458616|emb|CAB50104.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 765
Score = 1546 bits (3960), Expect = 0.0
Identities = 765/765 (100%), Positives = 765/765 (100%)
Query: 1 MRYVKLNPFKPRVALPIIIVVSLFYRLLTFRFKYLLGYDPYLHLAYIEEALKAGEWFNFF 60
MRYVKLNPFKPRVALPIIIVVSLFYRLLTFRFKYLLGYDPYLHLAYIEEALKAGEWFNFF
Sbjct: 1 MRYVKLNPFKPRVALPIIIVVSLFYRLLTFRFKYLLGYDPYLHLAYIEEALKAGEWFNFF 60
Query: 61 TLAKAPWGMQMRKFHPLGLWMIPAYIHKIFNIPLYTAFKITPVIFGVLTVVFTYLALLKL 120
TLAKAPWGMQMRKFHPLGLWMIPAYIHKIFNIPLYTAFKITPVIFGVLTVVFTYLALLKL
Sbjct: 61 TLAKAPWGMQMRKFHPLGLWMIPAYIHKIFNIPLYTAFKITPVIFGVLTVVFTYLALLKL 120
Query: 121 YGERKAFYASLFLGVSYGHVFRSMANYYRGDNYMLFWYSLAFLGIALALGEKRRSWRYRR 180
YGERKAFYASLFLGVSYGHVFRSMANYYRGDNYMLFWYSLAFLGIALALGEKRRSWRYRR
Sbjct: 121 YGERKAFYASLFLGVSYGHVFRSMANYYRGDNYMLFWYSLAFLGIALALGEKRRSWRYRR 180
Query: 181 LIFYLIPGIGSGLASIFWQAYYPIFIFLLGNALLLSFGAFLLREDKYILDGLLLASLTVL 240
LIFYLIPGIGSGLASIFWQAYYPIFIFLLGNALLLSFGAFLLREDKYILDGLLLASLTVL
Sbjct: 181 LIFYLIPGIGSGLASIFWQAYYPIFIFLLGNALLLSFGAFLLREDKYILDGLLLASLTVL 240
Query: 241 GAFMANYLGGKFGYGMFGYDHGLGKTVAEKLSLELSTIKDAFLLVYLKYLVPLVVLGIVI 300
GAFMANYLGGKFGYGMFGYDHGLGKTVAEKLSLELSTIKDAFLLVYLKYLVPLVVLGIVI
Sbjct: 241 GAFMANYLGGKFGYGMFGYDHGLGKTVAEKLSLELSTIKDAFLLVYLKYLVPLVVLGIVI 300
Query: 301 LLVVSYFLKSLKARAVLSTFIILLGLLIVLLKFGSLLKDLSTGFGMFKEVPIAETVPPKF 360
LLVVSYFLKSLKARAVLSTFIILLGLLIVLLKFGSLLKDLSTGFGMFKEVPIAETVPPKF
Sbjct: 301 LLVVSYFLKSLKARAVLSTFIILLGLLIVLLKFGSLLKDLSTGFGMFKEVPIAETVPPKF 360
Query: 361 SDLWAAFALSLFLSPLFFLEFRRPKVQDFMFLGLIIPSLYMFLTWTRFLFIGSLAVTLMA 420
SDLWAAFALSLFLSPLFFLEFRRPKVQDFMFLGLIIPSLYMFLTWTRFLFIGSLAVTLMA
Sbjct: 361 SDLWAAFALSLFLSPLFFLEFRRPKVQDFMFLGLIIPSLYMFLTWTRFLFIGSLAVTLMA 420
Query: 421 GIGLISAYERILRKGLALALILLVILPGVNAGVGFNYVAKQKPLINDYWVNALRWLRSNS 480
GIGLISAYERILRKGLALALILLVILPGVNAGVGFNYVAKQKPLINDYWVNALRWLRSNS
Sbjct: 421 GIGLISAYERILRKGLALALILLVILPGVNAGVGFNYVAKQKPLINDYWVNALRWLRSNS 480
Query: 481 NENDIVLAWWDYGQWITYYARRAPIAQGSPSIGVALYLLGKLNYRWAESLGVDYVIVSYY 540
NENDIVLAWWDYGQWITYYARRAPIAQGSPSIGVALYLLGKLNYRWAESLGVDYVIVSYY
Sbjct: 481 NENDIVLAWWDYGQWITYYARRAPIAQGSPSIGVALYLLGKLNYRWAESLGVDYVIVSYY 540
Query: 541 DFLKFPAIVATANMHPKYNLTGYALVVVPLVERAGDVFVFRGNGYEVIFTPRKVVVKTPV 600
DFLKFPAIVATANMHPKYNLTGYALVVVPLVERAGDVFVFRGNGYEVIFTPRKVVVKTPV
Sbjct: 541 DFLKFPAIVATANMHPKYNLTGYALVVVPLVERAGDVFVFRGNGYEVIFTPRKVVVKTPV 600
Query: 601 GTFVPREVYVEEGYKIGEYEYNGVNYLYVNLNYGYSVVMNEKAFNTTLVQLFLGLEKPYK 660
GTFVPREVYVEEGYKIGEYEYNGVNYLYVNLNYGYSVVMNEKAFNTTLVQLFLGLEKPYK
Sbjct: 601 GTFVPREVYVEEGYKIGEYEYNGVNYLYVNLNYGYSVVMNEKAFNTTLVQLFLGLEKPYK 660
Query: 661 LVYSDGGIVKVFKLEHPNVAVERGNRIILRFINATGTSLGIYGFLDNGTLVFKRGYNVKG 720
LVYSDGGIVKVFKLEHPNVAVERGNRIILRFINATGTSLGIYGFLDNGTLVFKRGYNVKG
Sbjct: 661 LVYSDGGIVKVFKLEHPNVAVERGNRIILRFINATGTSLGIYGFLDNGTLVFKRGYNVKG 720
Query: 721 KEEFVLPMDLNGSVVVRYVYVKGKTVLDRGVFRVSIGRKIYPANG 765
KEEFVLPMDLNGSVVVRYVYVKGKTVLDRGVFRVSIGRKIYPANG
Sbjct: 721 KEEFVLPMDLNGSVVVRYVYVKGKTVLDRGVFRVSIGRKIYPANG 765
>pir||D71072 hypothetical protein PH1271 - Pyrococcus horikoshii
>gi|3257691|dbj|BAA30374.1| (AP000005) 758aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 758
Score = 913 bits (2334), Expect = 0.0
Identities = 445/761 (58%), Positives = 569/761 (74%), Gaps = 21/761 (2%)
Query: 10 KPRVALPIIIVVSLFYRLLTFRFKYLLGYDPYLHLAYIEEALKAGEWFNFFTLAKAPWGM 69
K R ++ II++V++FYR++TFRFKYLLGYDPY HLAYIEE K G+W NF T A PWG
Sbjct: 2 KRRYSILIILLVAIFYRMITFRFKYLLGYDPYFHLAYIEEVNKVGKWINFLTFAGGPWGY 61
Query: 70 QMRKFHPLGLWMIPAYIHK---IFNIPLYTAFKITPVIFGVLTVVFTYLALLKLYGERKA 126
Q++ FHPLGLWM P Y++K +F + L T FKITPVIFGVLTV+F YL+LLKLY E++A
Sbjct: 62 QVKLFHPLGLWMTPLYLYKLLKVFGVSLTTTFKITPVIFGVLTVIFLYLSLLKLYDEKRA 121
Query: 127 FYASLFLGVSYGHVFRSMANYYRGDNYMLFWYSLAFLGIALALGEKRRSWRYRRLIFYLI 186
F+ FL +SYGHVFRSMANYYRGDNYMLFWYS+A LGI+LALG K+ W+Y+RLIFY +
Sbjct: 122 FFGGFFLAISYGHVFRSMANYYRGDNYMLFWYSVALLGISLALGIKKGKWKYKRLIFYTL 181
Query: 187 PGIGSGLASIFWQAYYPIFIFLLGNALLLSFGAFLLREDKYILDGLLLASLTVLGAFMAN 246
P + SG ++IFWQAYYPIF FLL NALLL+ GAF+L++DKY+LD ++L T G +AN
Sbjct: 182 PVLASGFSAIFWQAYYPIFAFLLSNALLLAVGAFILKKDKYLLDSIILILSTAFGVLLAN 241
Query: 247 YLGGKFGYGMFGYDHGLGKTVAEKLSLELSTIKDAFLLVYLKYLVPLVVLGIVILLVVSY 306
YLGG FGYGM GY LGK+VA+KL LE +KD +L+++LKYLVP+ + +++L+++ +
Sbjct: 242 YLGGIFGYGMLGYAKWLGKSVAKKLGLEFGYLKDVYLILHLKYLVPISLSFVLVLILLGF 301
Query: 307 FLKSLKARAVLSTFIILLGLLIVLLKFGSLLKDLSTGFGMFKEVPIAETVPPKFSDLWAA 366
K ++ R++ +G++I+ +F LK+LSTGFG+FKE PI ET P F DLWAA
Sbjct: 302 LTKDIRIRSLFLGIASFIGIIILFKRF-EALKELSTGFGIFKEAPILETQPTSFKDLWAA 360
Query: 367 FALSLFLSPLFFLEFRRPKVQDFMFLGLIIPSLYMFLTWTRFLFIGSLAVTLMAGIGLIS 426
F+LS FL+PLFF+ F++P+V+DF+ LGLIIPS+YM TWTRFLFIGS+A+ +M+GIG++
Sbjct: 361 FSLSFFLTPLFFIRFKKPRVEDFLTLGLIIPSVYMLKTWTRFLFIGSMAIAIMSGIGIVE 420
Query: 427 AYERIL-----RKGLALALILLVILPGVNAGVGFNYVAKQKPLINDYWVNALRWLRSNSN 481
YE I +K LA +I LVILPGV AG+ F V P +N+ W AL+WL++NSN
Sbjct: 421 LYEAIKPRLNGKKALATGIITLVILPGVIAGLSFKEVCSLHPEMNEAWERALKWLKNNSN 480
Query: 482 ENDIVLAWWDYGQWITYYARRAPIAQGSPSIGVALYLLGKLNYRWAESLGVDYVIVSYYD 541
END++LAWWD+G +ITYYARR+PIAQG PS+GVALYLLGKLN WA +LGVDYVIVSYYD
Sbjct: 481 ENDVILAWWDWGHFITYYARRSPIAQGGPSVGVALYLLGKLNENWAINLGVDYVIVSYYD 540
Query: 542 FLKFPAIVATANMHPKYNLTGYALVVVPLVERAGDVFVFRGNGYEVIFTPRK---VVVKT 598
FLKF AI++TAN+ +YN+ GY LVV+PL G +F GY I K V+
Sbjct: 541 FLKFGAILSTANLSKRYNIRGYGLVVLPLRASTG-ALIFENRGYRAIVRHDKSWNAVIIY 599
Query: 599 PVGTFVPREVYVEEGYKIGEY---EYNGVNYLYVNLNYGYSVVMNEKAFNTTLVQLFLGL 655
PR++YVE + E E N YLYVNLNYGY++ MN AFNTTLV+LF+
Sbjct: 600 NGQMIYPRKLYVEHKEGVQEIKPPESNSNTYLYVNLNYGYAIFMNGNAFNTTLVRLFITP 659
Query: 656 EKPYKLVYSDGGIVKVFKLEHPNVAVE-RGNRIILRFINATGTSLGIYGFLDNGTLVFKR 714
EKPYKLVYSDGG++K+FKLEHPNV VE R + +IL F N GTSLG+Y FLDNGT+V +
Sbjct: 660 EKPYKLVYSDGGLIKIFKLEHPNVKVERRESNVILNFEN--GTSLGLYFFLDNGTMVLSK 717
Query: 715 GYNVKGKEEFVLPMDLNGSVVVRYVYVKGKTVLDRGVFRVS 755
YNVKGK EF++P +N S V RYV +GK V+DRGVFR+S
Sbjct: 718 WYNVKGKNEFIVP-KVNAS-VARYVLKRGKKVVDRGVFRLS 756
>pir||B75059 probable transmembrane oligosaccharyl transferase PAB0974 -
Pyrococcus abyssi (strain Orsay)
>gi|5458880|emb|CAB50367.1| (AJ248287) TRANSMEMBRANE
OLIGOSACCHARYL TRANSFERASE, PUTATIVE. [Pyrococcus
abyssi]
Length = 766
Score = 812 bits (2075), Expect = 0.0
Identities = 410/765 (53%), Positives = 541/765 (70%), Gaps = 28/765 (3%)
Query: 10 KPRVALPIIIVVSLFYRLLTFRFKYLLGYDPYLHLAYIEEALKAGEWFNFFTLAKAPWGM 69
+P++ALPI+++V + R++ RFKYLLGYDPY HLAYIEE+LKAG+WFNFFT+A PWG
Sbjct: 8 EPKIALPIVVLVGVTLRVIPLRFKYLLGYDPYFHLAYIEESLKAGKWFNFFTIANGPWGF 67
Query: 70 QMRKFHPLGLWMIPAYIH---KIFNIPLYTAFKITPVIFGVLTVVFTYLALLKLYGERKA 126
Q++ FHPLGLWM PAYI+ K+F I + T FKITPVIFG LT+VF Y++LLKLYG+ KA
Sbjct: 68 QIKSFHPLGLWMTPAYIYRFLKVFGISVQTVFKITPVIFGTLTIVFFYISLLKLYGKEKA 127
Query: 127 FYASLFLGVSYGHVFRSMANYYRGDNYMLFWYSLAFLGIALALGEKRRSWRYRRLIFYLI 186
F+AS+FL +S+GH+FRSMANYYRGDNYMLFWYSLA GIA AL R+ YRRL+FYL+
Sbjct: 128 FFASIFLALSFGHIFRSMANYYRGDNYMLFWYSLALAGIAYAL----RTKGYRRLVFYLV 183
Query: 187 PGIGSGLASIFWQAYYPIFIFLLGNALLLSFGAFLLREDKYILDGLLLASLTVLGAFMAN 246
P + SG++S+FWQAYYP+F+FL N + L+ G+FLL + + LD ++ T GA +AN
Sbjct: 184 PTLASGISSVFWQAYYPLFVFLSLNGVFLAIGSFLLDKKRNFLDSFIIILSTAFGAIIAN 243
Query: 247 YLGGKFGYGMFGYDHGLGKTVAEKLSLELSTIKDAFLLVYLKYLVPLVVLGIVILLVVSY 306
YLG KFGYGM GY+ + + KL ++L I+DA+L ++L YLVP+ + ++ILL +S
Sbjct: 244 YLGEKFGYGMLGYNR---QHIVSKLGIKLGKIRDAYLFIHLHYLVPISLGLLIILLFLSR 300
Query: 307 FLKSLKARAVLSTFIILLGLLIVLLKFGSLLKDLSTGFGMFKEVPIAETVPPKFSDLWAA 366
F+KS +A+ + + + +LI+LLKF +L + L F MFK PI ET P F DLW A
Sbjct: 301 FVKSKRAKVGIVIGLGTVSILIILLKFPAL-RGLLGIFDMFKSTPIMETRPTNFHDLWKA 359
Query: 367 FALSLFLSPLFFLEFRRPKV--QDFMFLGLIIPSLYMFLTWTRFLFIGSLAVTLMAGIGL 424
F++S+FL PLFFL F KV +DF LGLI+PSLYM L W RF+F+GSLAV MAGIGL
Sbjct: 360 FSISIFLLPLFFLRFHPEKVKTEDFFLLGLIVPSLYMLLAWARFVFVGSLAVATMAGIGL 419
Query: 425 ISAYERILR-----KGLALALILLVILPGVNAGVGFNYVAKQKPLINDYWVNALRWLRSN 479
+ Y +++ K +ALILL++L VN +PLIN W NAL WL++N
Sbjct: 420 VEGYSLVIQRRKSGKASRVALILLILLLIVNGAFTLKNCLSMRPLINKEWENALIWLKNN 479
Query: 480 SNENDIVLAWWDYGQWITYYARRAPIAQGSPSIGVALYLLGKLNYRWAESLGVDYVIVSY 539
SNEND++LAWWDYG WITYY+RRAP+A+ +P+ VALY LG N W SLGVDYVIVSY
Sbjct: 480 SNENDVILAWWDYGAWITYYSRRAPVAEIAPNPDVALYYLGARNRDWIMSLGVDYVIVSY 539
Query: 540 YDFLKFPAIVATANMHPKYNL-TGYALVVVPLVERAGDVFVFRGNGYEVIFTPRKV-VVK 597
YDFLKF +IV TA+ YNL Y + V+PL G + +F G Y++I P + V+
Sbjct: 540 YDFLKFSSIVRTASAQSGYNLIKRYWIAVLPLTSSYGGILIFEGGEYKIIAKPGDIWDVR 599
Query: 598 TPVGTFV--PREVYVEEGYKIGE--YEYNGVN-YLYVNLNYGYSVVMNEKAFNTTLVQLF 652
+G V PR +YVE K+ E +Y+ + YLY+NLNY Y+++MN + FNT L++LF
Sbjct: 600 IIIGDHVVYPRGLYVEYKGKVTESKLKYSSTDAYLYINLNYKYAILMNSETFNTPLIRLF 659
Query: 653 LGLEKPYKLVYSDGGIVKVFKLEHPNVAVER-GNRIILRFINATGTSLGIYGFLDNGTLV 711
+ KPY+LVYSDGG++K+ KL HPNV + N+I+ RF NATGT L I GFLDNG +V
Sbjct: 660 INASKPYELVYSDGGLIKILKLNHPNVKIRNMHNKIVFRFENATGTKLRILGFLDNGAMV 719
Query: 712 FKRGYNVKGKEEFVLP-MDLNGSV-VVRYVYVKGKTVLDRGVFRV 754
F+R Y+V+ + EF LP +L V V+RY Y+K V+DRGVFRV
Sbjct: 720 FEREYSVENRTEFELPKSELPKEVEVIRYAYLKDGKVVDRGVFRV 764
>pir||C71248 hypothetical protein PH0242 - Pyrococcus horikoshii
>gi|3256631|dbj|BAA29314.1| (AP000001) 976aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 976
Score = 109 bits (270), Expect = 1e-22
Identities = 157/628 (25%), Positives = 260/628 (41%), Gaps = 98/628 (15%)
Query: 12 RVALPIII----VVSLFYRLLTFRFKYLLGYDPYLHLAYIEEALKAGEWFNFFTLAKAPW 67
+V +PI++ + + + R LT KY D + H + LK G ++ ++ AP+
Sbjct: 27 KVLIPILVFGFAIYAFYLRHLTAG-KYFPDPDTFYHFEIYKLVLKEG-LPRYYPMSDAPF 84
Query: 68 GMQMRKFHPLGLWMIPAYIHKIFNIPLYT---AFKITPVIFGVLTVVFTYLALLKLYGER 124
G + + PLGL+++PA +K+ ++ Y AF + P G L V+ YL K+ E
Sbjct: 85 GSLIGE--PLGLYLLPAAFYKVVSLFGYNELQAFLLWPPFVGFLGVIAVYLLGRKVLNEW 142
Query: 125 KAFYASLFLGVSYGHVFRSMANYYRGDNYMLFWYSLAFLGIALALGEKRRSWRYRRLIFY 184
+ ++ L VS + R+ + RGD + + A + + L E ++ R++I+
Sbjct: 143 TGLWGAVVLTVSTANFSRTFSGNARGDGPFMALFIFASVAMLYYLKESNKT---RKIIYG 199
Query: 185 LIPGIGSGLASIFWQAYYPIFIFLLGNALLLSFGAFL---LREDKYILDGLLLASLTVLG 241
+ + + ++ W + LLG A L + F+ L E K + A L +L
Sbjct: 200 TLFVLLTVISLGAWNGSPFGLMVLLGFASLQTIILFIFGKLEELKKFVKEFYPAYLAILA 259
Query: 242 AFMANYLGGKFGYGMFGYDHGLGKTVAEKLSLELSTIKDAFLLVYLKYLVPLVVLGIVIL 301
A G G F I+ AF V LG++ L
Sbjct: 260 FGYALTFPGIVKIGGF--------------------IRFAF----------EVFLGLIFL 289
Query: 302 LVVSYF------LKSLKARAVLSTFIILLGLLIVLLKFGSLLKDLSTGFGMFKEV--PIA 353
LV+ + K R ++ T I+LLG G L L G +V +
Sbjct: 290 LVIMLYGGRYLNYSDKKHRFLVVTIIVLLGFGGAYAYVGPKLFRLMGGAYQSTQVYETVQ 349
Query: 354 ETVPPKFSDLWAAFALSLFLSPLFFLE---------------FRRPKVQDFMFLGLII-- 396
E D+ A + + +FFL F++ K + L+
Sbjct: 350 ELAKTTIGDVKAYYGVESGNGLIFFLSIPGLLILLTKYLYDLFKKAKSDNETLFALVFYT 409
Query: 397 PSLYMFLTWTRFLFIGSLAVTLMAGIGLISAYERILRK----------GLALALILLVIL 446
SLY+ RFLF+ S AV L GI + + + I + G+ L+L++LVI
Sbjct: 410 MSLYLLYLAVRFLFLASYAVALFFGIFIGFSMDVIEKMKENIGIKAALGIVLSLMILVI- 468
Query: 447 PGVNAGV--GFNYVAKQKPLINDYWVNALRWLRSNSNENDIVLAWWDYGQWI--TYYARR 502
P V+A V K + W AL+WLRSN+++ +WWDYG WI + R
Sbjct: 469 PFVHAPVLARSARALKNTEIEVTGWEQALKWLRSNTSKYATATSWWDYGYWIESSLLGNR 528
Query: 503 APIAQGSPSIG----VALYLL--GKLNYRWAESLGVDYVIVSYYDFLKFPAI--VATANM 554
A G + +AL+L G ++ ES ++Y I+ D+ KF AI + A
Sbjct: 529 RASADGGHARDRDHILALFLARDGNISEVDFESWELNYFIIYLNDWAKFNAISYLGGAIT 588
Query: 555 HPKYNLTGYA---LVVVPLVERAGDVFV 579
+YN + + L + AG+V+V
Sbjct: 589 RKEYNGDENGRGRVTTILLTQAAGNVYV 616
>pir||E75212 oligosaccharyl transferase PAB2202 - Pyrococcus abyssi (strain
Orsay) >gi|5457657|emb|CAB49148.1| (AJ248283)
OLIGOSACCHARYL TRANSFERASE [Pyrococcus abyssi]
Length = 976
Score = 105 bits (259), Expect = 2e-21
Identities = 149/633 (23%), Positives = 257/633 (40%), Gaps = 96/633 (15%)
Query: 6 LNPFKPRVALPIIIV---VSLFYRLLTFRFKYLLGYDPYLHLAYIEEALKAGEWFNFFTL 62
L P R+ +P+ ++ + +Y KY D + H + LK G ++ +
Sbjct: 22 LYPLLKRILIPLAVIGFGIYAYYLRHLTAGKYFPDPDTFYHFEIYKLVLKEG-LPKYYPM 80
Query: 63 AKAPWGMQMRKFHPLGLWMIPAYIHKIFNIPLYT---AFKITPVIFGVLTVVFTYLALLK 119
A+AP+G + + PLGL+++PA +K+ ++ Y AF + P G L V+ YL K
Sbjct: 81 AEAPFGSLIGE--PLGLYILPAIFYKVVSVFGYNEFQAFLMWPPFVGFLGVIAVYLLGRK 138
Query: 120 LYGERKAFYASLFLGVSYGHVFRSMANYYRGDNYMLFWYSLAFLGIALALGE----KRRS 175
+ E +A++ L VS + R+ + RGD + + + + + L E K+
Sbjct: 139 VLNEWAGLWAAVILSVSTANFSRTFSGNARGDGPFMTLFLFSLVAMLYYLKENDIKKKSL 198
Query: 176 WRYRRLIFYLIPGIGSGLASIFWQAYYPIFIFLLGNALLLSFGAFL---LREDKYILDGL 232
W +F L+ I G W + L+G A + F+ ++E K +
Sbjct: 199 WG---AVFVLLASISLGA----WNGSPFGLMVLIGFASFQTIALFIFGKIKELKKFVKEF 251
Query: 233 LLASLTVLGAFMANYLGGKFGYGMFGYDHGLGKTVAEKLSLELSTIKDAFLLVYLKYLVP 292
A L +L GYG+ G+ K F+ + +
Sbjct: 252 YPAYLAILA----------IGYGLT--IPGIAKI-------------GGFIKFAFEVFLG 286
Query: 293 LVVLGIVILLVVSYFLK--SLKARAVLSTFIILLGLLIVLLKFGSLLKDLSTGFGMFKEV 350
LV+L + I+L FL K R + I+LLG G L L G +V
Sbjct: 287 LVLL-VTIMLYGGKFLNYSDKKHRFAVVAVIVLLGFAGAYAYVGPKLFRLMGGAYQSTQV 345
Query: 351 --PIAETVPPKFSDLWAAFALSLFLSPLFFLEF---------------RRPKVQDFMFLG 393
+ E SD+ + + +FFL ++ + + L
Sbjct: 346 YQTVQELAKTTLSDIKLYYGVEGNNGLVFFLSIPGFLIILGLYLNALLKKSESSNEYMLS 405
Query: 394 LI--IPSLYMFLTWTRFLFIGSLAVTLMAGIGLISAYERI--------LRKGLALALILL 443
L+ I SLY+ RFLF+ S A+ L +GI E I ++ L +A+ ++
Sbjct: 406 LVFYIMSLYLLSLAVRFLFLASYAIALFSGIFAGFTMEVIEKMKENVGIKAALGIAIAVM 465
Query: 444 VILPGVNAG--VGFNYVA-KQKPLINDYWVNALRWLRSNSNENDIVLAWWDYGQWI--TY 498
+++ + G + N A K + W L+WL N+++ +WWDYG WI +
Sbjct: 466 ILMVPITHGPVIARNAKALKVSEIETTGWEQVLKWLNENTSKYATATSWWDYGYWIESSL 525
Query: 499 YARRAPIAQGSPSIG----VALYLL--GKLNYRWAESLGVDYVIVSYYDFLKFPAI--VA 550
R A G + +AL+L G ++ ES ++Y I+ D+ KF AI +
Sbjct: 526 LGHRRASADGGHARDRDHILALFLARDGNVSEVDFESWELNYFIIYLNDWAKFNAISYLG 585
Query: 551 TANMHPKYN----LTGYALVVVPLVERAGDVFV 579
A +YN G ++PL + +G ++V
Sbjct: 586 GAITRREYNGDETGRGQVTTILPL-QGSGGIYV 617
>gb|AAK41316.1| Oligosaccharyl transferase STT3 subunit (B5) (integral membrane
protein 1) [Sulfolobus solfataricus]
Length = 764
Score = 87.8 bits (214), Expect = 4e-16
Identities = 126/552 (22%), Positives = 230/552 (40%), Gaps = 76/552 (13%)
Query: 13 VALPIII---VVSLFYRLLTFRFKYLLG-YDP-YLHLAYIEEALKAGEWFNF--FTLAKA 65
+ LP+I+ +VS+ R L+ + + +DP YL + A G W+ L
Sbjct: 17 IDLPLIVGLSLVSILIRSLSANWPLAVNEFDPWYLFYNALLIAQVHGNWYAVPPDVLGWF 76
Query: 66 PWGMQMRKFHPLGLWMIPAYIHKIFN-----IPLYTAFKITPVIFGVLTVVFTYLALLKL 120
PWG + + +GL + A F +YT + ++ L V+ +YL++ +
Sbjct: 77 PWGYFIELGNTIGLPFLVALASLPFYGTYGANAVYTVAIFSDILLAGLGVIASYLSIESI 136
Query: 121 YGERKAFY-ASLFLGVSYGHVFRSMANYYRGDNYMLFWYSLAFLGIALALGEKRRSWRYR 179
R A Y A+ + VS ++++ G W ++ L L + + +
Sbjct: 137 TNSRLAGYMAAAIIAVSPALTYKNLL----GGLPKTSWGAVFILFAIFLLNQGLK----K 188
Query: 180 RLIFYLIP-GIGSGLASIFWQAYYPIFIFLLGNALLLSFGAFLLREDKYILDGLLLASLT 238
+ I+Y IP GI LA I W Y I + LL A LL L R D+ + L +
Sbjct: 189 KNIWYGIPAGIVLFLAEISWGGYTYIDLSLLVAAFLL---ILLNRNDEITAN--LYTIMV 243
Query: 239 VLGAFMANYLGGKFGYGMFGYDHGLGKTVAEKLSLELSTIKDAFLLVYLKYLVPLVVLGI 298
V+ +F+ + G+ M G HG + + +L +YL +P ++
Sbjct: 244 VVTSFLTSLAPNNIGF-MSGLAHGFSLLLISAV---------LYLDLYLSRTLPKEIVDS 293
Query: 299 VILLVVSYFLKSLKARAVLSTFIILLGLLIVLLKFGSLLKDLSTGFGMFKE-----VPI- 352
L+V++ + FI+ LGL + + + S + + VPI
Sbjct: 294 RNLIVIAVLI-----------FILTLGLSGLSILRPTSAPIPSRYYAIINPFYQVTVPID 342
Query: 353 ---AETVPPKFSDLWAAFALSLFLSPL-FFLEFRRPKVQDFMFLGLIIPSLYMFLTWTRF 408
AE +P + + F ++LFLS + + RR + L L + S++
Sbjct: 343 KTVAEYIPQPITAMIQDFGIALFLSVIGMYYLIRRGNLVGLWLLVLGVASIFGTSEQPYL 402
Query: 409 LFIGSLAVTLMAGIGLISAYERILR-----KGLALALILLVILPGVN--AGVGFNYVAKQ 461
+ V + G+G+ + +L+ G + + ++ L G++ A G +A
Sbjct: 403 FNYTAYMVATLGGLGVYYISDNLLKGVKNGNGNKILVGFILALVGISLVADAGLATLASN 462
Query: 462 KP----------LINDY-WVNALRWLRSNSNENDIVLAWWDYGQWITYYARRAPIAQGSP 510
+P L +Y WV+A W+R++S +N VL+WWDYG W+ R+ I + +
Sbjct: 463 EPPAITNAATSFLTTNYSWVSAANWIRTHSPQNAFVLSWWDYGYWLEVLTNRSVIDENNT 522
Query: 511 SIGVALYLLGKL 522
G + L+ ++
Sbjct: 523 LNGTQIRLMAEM 534
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.147 0.452
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 291056558
Number of Sequences: 2977
Number of extensions: 13224311
Number of successful extensions: 36356
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 36328
Number of HSP's gapped (non-prelim): 7
length of query: 765
length of database: 189,106,746
effective HSP length: 52
effective length of query: 713
effective length of database: 157,985,422
effective search space: 112643605886
effective search space used: 112643605886
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 169 (70.2 bits)