BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1588 (PAB1588) DE:Hypothetical protein
(213 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75100 hypothetical protein PAB1588 - Pyrococcus abyssi (st... 433 e-121
pir||A71154 hypothetical protein PH0432 - Pyrococcus horikoshii ... 340 8e-93
gb|AAD10187.1| (AF026471) Cps2T [Streptococcus pneumoniae] 73 4e-12
gb|AAC38749.1| (AF030373) putative rhamnosyl transferase [Strept... 70 2e-11
gb|AAC69529.1| (AF057294) Cps23fF [Streptococcus pneumoniae] 70 2e-11
>pir||A75100 hypothetical protein PAB1588 - Pyrococcus abyssi (strain Orsay)
>gi|5458614|emb|CAB50102.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 213
Score = 433 bits (1102), Expect = e-121
Identities = 213/213 (100%), Positives = 213/213 (100%)
Query: 1 MDKPHIAIIGLRGIPSKYGGTETFVEELTMILKDKFQFYVMHEDDKFFEDNYNGIIRIHS 60
MDKPHIAIIGLRGIPSKYGGTETFVEELTMILKDKFQFYVMHEDDKFFEDNYNGIIRIHS
Sbjct: 1 MDKPHIAIIGLRGIPSKYGGTETFVEELTMILKDKFQFYVMHEDDKFFEDNYNGIIRIHS 60
Query: 61 LAIESKSTSIPSINDFLNTAYVLAKHKKSIDLFYFLGPDSAVAAILAKFEKKRIMMNPDG 120
LAIESKSTSIPSINDFLNTAYVLAKHKKSIDLFYFLGPDSAVAAILAKFEKKRIMMNPDG
Sbjct: 61 LAIESKSTSIPSINDFLNTAYVLAKHKKSIDLFYFLGPDSAVAAILAKFEKKRIMMNPDG 120
Query: 121 VEWKRLIKRSYFVPFYLFPIYLATMIYMYLMEYLSCKLPDVVVADSLGIREHLMRRHKPR 180
VEWKRLIKRSYFVPFYLFPIYLATMIYMYLMEYLSCKLPDVVVADSLGIREHLMRRHKPR
Sbjct: 121 VEWKRLIKRSYFVPFYLFPIYLATMIYMYLMEYLSCKLPDVVVADSLGIREHLMRRHKPR 180
Query: 181 RVIYIAYGARELLPSKPSKEDEAKILDRLRRFS 213
RVIYIAYGARELLPSKPSKEDEAKILDRLRRFS
Sbjct: 181 RVIYIAYGARELLPSKPSKEDEAKILDRLRRFS 213
>pir||A71154 hypothetical protein PH0432 - Pyrococcus horikoshii
>gi|3256835|dbj|BAA29518.1| (AP000002) 393aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 393
Score = 340 bits (863), Expect = 8e-93
Identities = 161/208 (77%), Positives = 185/208 (88%)
Query: 1 MDKPHIAIIGLRGIPSKYGGTETFVEELTMILKDKFQFYVMHEDDKFFEDNYNGIIRIHS 60
++KP IAIIGLRGIPSKYGGTETFVEELT LKD F+FYVMHED KFFED YN IIR+HS
Sbjct: 4 LEKPRIAIIGLRGIPSKYGGTETFVEELTSRLKDAFKFYVMHEDTKFFEDEYNRIIRVHS 63
Query: 61 LAIESKSTSIPSINDFLNTAYVLAKHKKSIDLFYFLGPDSAVAAILAKFEKKRIMMNPDG 120
AIESKSTSIPSINDF NTAY+LA H+K I+LFYFLGPDS++AAILA+ K++++NPDG
Sbjct: 64 PAIESKSTSIPSINDFTNTAYMLANHEKDIELFYFLGPDSSLAAILARLRGKKVLINPDG 123
Query: 121 VEWKRLIKRSYFVPFYLFPIYLATMIYMYLMEYLSCKLPDVVVADSLGIREHLMRRHKPR 180
VEW+RLIKRSYFVPFYLFPIY AT+IYMY MEYLSCKLPD+VVADSLGI+EHL +RHKPR
Sbjct: 124 VEWRRLIKRSYFVPFYLFPIYFATIIYMYFMEYLSCKLPDIVVADSLGIKEHLEKRHKPR 183
Query: 181 RVIYIAYGARELLPSKPSKEDEAKILDR 208
RV+YI YGAREL+ S+ S E+E +IL R
Sbjct: 184 RVVYITYGARELISSEFSVEEEKEILSR 211
>gb|AAD10187.1| (AF026471) Cps2T [Streptococcus pneumoniae]
Length = 394
Score = 72.6 bits (175), Expect = 4e-12
Identities = 73/225 (32%), Positives = 101/225 (44%), Gaps = 49/225 (21%)
Query: 3 KPHIAIIGLRGIPSKYGGTETFVEELTMILKD-KFQFYV--MHEDDK---FFED--NYNG 54
K + IIG +GIP+KYGG ETFVE+LT KD Q+YV + E+ F D YNG
Sbjct: 2 KKSVYIIGSKGIPAKYGGFETFVEKLTEYQKDGNIQYYVACIRENSAKSGFTADTFEYNG 61
Query: 55 IIRIHSLAIESKSTSIPSINDFLNTAYVLAKHKKSIDL----------FYFLGPDSAVAA 104
I + +P+I AY +A K+I+L FY L +
Sbjct: 62 AI--------CYNIDVPNIGPARAIAYDIAAVNKAIELAKGNKDEAPIFYILA--CRIGP 111
Query: 105 ILAKFEKK------RIMMNPDGVEWKRLIKRSYFVPFYLFPIYLATMIYMYLMEYLSCKL 158
++ +KK R+++NPDG EW R K S L Y E L K
Sbjct: 112 FISGLKKKIRSIGGRLLVNPDGHEWLR-AKWS-----------LPVRKYWKFSEQLMVKH 159
Query: 159 PDVVVADSLGIREHLMRRHK--PRRVIYIAYGARELLPSKPSKED 201
D++V DS I +++ +K + YIAYG + PS ED
Sbjct: 160 ADLLVCDSKNIEKYVREDYKQYQPKTTYIAYGT-DTTPSSLKSED 203
>gb|AAC38749.1| (AF030373) putative rhamnosyl transferase [Streptococcus
pneumoniae]
Length = 392
Score = 69.9 bits (168), Expect = 2e-11
Identities = 65/219 (29%), Positives = 99/219 (44%), Gaps = 37/219 (16%)
Query: 3 KPHIAIIGLRGIPSKYGGTETFVEELTMILKDK-FQFYVMHEDDKFFEDNYNGIIRIHSL 61
K + IIG +GIP+KYGG ETFVE+LT +DK Q+YV + + + H+
Sbjct: 2 KKSVYIIGSKGIPAKYGGFETFVEKLTAFQQDKAIQYYVACMRENSAKSGTTEDVFEHNG 61
Query: 62 AIESKSTSIPSIND---------FLNTAYVLAKHKKSID-LFYFLGPDSAVAAILAKFEK 111
AI + +P+I +N A +AK K D +FY L + + +K
Sbjct: 62 AI-CYNVDVPNIGPARAIAYDIAAINRAIEIAKENKDEDPIFYILA--CRIGPFIHGIKK 118
Query: 112 K------RIMMNPDGVEWKRLIKRSYFVPFYLFPIYLATMIYMYLMEYLSCKLPDVVVAD 165
K +++NPDG EW ++ + P Y + E L K D++V D
Sbjct: 119 KIQEIGGTLLVNPDGHEW---LRAKWSAP---------VRRYWKISEGLMVKHADLLVCD 166
Query: 166 SLGIREHLMRRHK--PRRVIYIAYG---ARELLPSKPSK 199
S I +++ +K + YIAYG R +L S K
Sbjct: 167 SKNIEKYIQEDYKQYQPKTTYIAYGTDTTRSVLKSSDEK 205
>gb|AAC69529.1| (AF057294) Cps23fF [Streptococcus pneumoniae]
Length = 392
Score = 69.9 bits (168), Expect = 2e-11
Identities = 65/219 (29%), Positives = 99/219 (44%), Gaps = 37/219 (16%)
Query: 3 KPHIAIIGLRGIPSKYGGTETFVEELTMILKDK-FQFYVMHEDDKFFEDNYNGIIRIHSL 61
K + IIG +GIP+KYGG ETFVE+LT +DK Q+YV + + + H+
Sbjct: 2 KKSVYIIGSKGIPAKYGGFETFVEKLTAFQQDKAIQYYVACMRENSAKSGTTEDVFEHNG 61
Query: 62 AIESKSTSIPSIND---------FLNTAYVLAKHKKSID-LFYFLGPDSAVAAILAKFEK 111
AI + +P+I +N A +AK K D +FY L + + +K
Sbjct: 62 AI-CYNVDVPNIGPARAIAYDIAAINRAIEIAKENKDEDPIFYILA--CRIGPFIHGIKK 118
Query: 112 K------RIMMNPDGVEWKRLIKRSYFVPFYLFPIYLATMIYMYLMEYLSCKLPDVVVAD 165
K +++NPDG EW ++ + P Y + E L K D++V D
Sbjct: 119 KIQEIGGTLLVNPDGHEW---LRAKWSAP---------VRRYWKISEGLMVKHADLLVCD 166
Query: 166 SLGIREHLMRRHK--PRRVIYIAYG---ARELLPSKPSK 199
S I +++ +K + YIAYG R +L S K
Sbjct: 167 SKNIEKYIQEDYKQYQPKTTYIAYGTDTTRSVLKSSDEK 205
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.143 0.419
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80706137
Number of Sequences: 2977
Number of extensions: 3292707
Number of successful extensions: 10637
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 10632
Number of HSP's gapped (non-prelim): 5
length of query: 213
length of database: 189,106,746
effective HSP length: 52
effective length of query: 161
effective length of database: 157,985,422
effective search space: 25435652942
effective search space used: 25435652942
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 163 (67.9 bits)