BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1589 (PAB1589) DE:Hypothetical protein
(344 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75099 hypothetical protein PAB1589 - Pyrococcus abyssi (st... 682 0.0
sp|Q58079|Y665_METJA HYPOTHETICAL PROTEIN MJ0665 >gi|2128435|pir... 103 3e-21
pir||F75173 hypothetical protein PAB2000 - Pyrococcus abyssi (st... 93 4e-18
pir||D69204 conserved hypothetical protein MTH781 - Methanobacte... 92 7e-18
pir||C71041 hypothetical protein PH1619 - Pyrococcus horikoshii ... 91 1e-17
>pir||H75099 hypothetical protein PAB1589 - Pyrococcus abyssi (strain Orsay)
>gi|5458613|emb|CAB50101.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 344
Score = 682 bits (1741), Expect = 0.0
Identities = 344/344 (100%), Positives = 344/344 (100%)
Query: 1 MAHRVWIDIANTAEIPFFKPIISELKHKYQIYLTCWKRGEVPELLRSLGFQVKPILSDFA 60
MAHRVWIDIANTAEIPFFKPIISELKHKYQIYLTCWKRGEVPELLRSLGFQVKPILSDFA
Sbjct: 1 MAHRVWIDIANTAEIPFFKPIISELKHKYQIYLTCWKRGEVPELLRSLGFQVKPILSDFA 60
Query: 61 DPIKKALSVGLRTSLLTATAPKFDAVVTMENVMPLPSAYLRRKTSIIILDNDVKLNAPQS 120
DPIKKALSVGLRTSLLTATAPKFDAVVTMENVMPLPSAYLRRKTSIIILDNDVKLNAPQS
Sbjct: 61 DPIKKALSVGLRTSLLTATAPKFDAVVTMENVMPLPSAYLRRKTSIIILDNDVKLNAPQS 120
Query: 121 IFQRLENRVKKLAKYVLVPEIAYDEFSRFFGKDILTYPGIKEHVSISDYVPDPEFLSKVP 180
IFQRLENRVKKLAKYVLVPEIAYDEFSRFFGKDILTYPGIKEHVSISDYVPDPEFLSKVP
Sbjct: 121 IFQRLENRVKKLAKYVLVPEIAYDEFSRFFGKDILTYPGIKEHVSISDYVPDPEFLSKVP 180
Query: 181 FEEYIVLRPESLASHYVLEKESIVPELLDMFTKEGVNIIYLPRNKAERALSRGFEVYIPP 240
FEEYIVLRPESLASHYVLEKESIVPELLDMFTKEGVNIIYLPRNKAERALSRGFEVYIPP
Sbjct: 181 FEEYIVLRPESLASHYVLEKESIVPELLDMFTKEGVNIIYLPRNKAERALSRGFEVYIPP 240
Query: 241 KPLNGLDLSYYSNAVLTGSGTMAREAALLGVLAVSFFPGKQLLAIDKYLIEKGEIFHSRD 300
KPLNGLDLSYYSNAVLTGSGTMAREAALLGVLAVSFFPGKQLLAIDKYLIEKGEIFHSRD
Sbjct: 241 KPLNGLDLSYYSNAVLTGSGTMAREAALLGVLAVSFFPGKQLLAIDKYLIEKGEIFHSRD 300
Query: 301 PRAIVEYVISNLKVRKKPKVKEGKKIKAYIISLINDLIDGSILL 344
PRAIVEYVISNLKVRKKPKVKEGKKIKAYIISLINDLIDGSILL
Sbjct: 301 PRAIVEYVISNLKVRKKPKVKEGKKIKAYIISLINDLIDGSILL 344
>sp|Q58079|Y665_METJA HYPOTHETICAL PROTEIN MJ0665 >gi|2128435|pir||A64383 hypothetical
protein MJ0665 - Methanococcus jannaschii
>gi|1591378|gb|AAB98656.1| (U67513) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 341
Score = 103 bits (254), Expect = 3e-21
Identities = 89/329 (27%), Positives = 155/329 (47%), Gaps = 33/329 (10%)
Query: 5 VWIDIANTAEIPFFKPIISEL-KHKYQIYLTCWKRGEVPELLRSLGFQVKPILSDFADPI 63
VWID+ N + +F +I + K + LT G + +L+ F V + + +
Sbjct: 6 VWIDLTNAPHVHYFCQLIKKFEKEGIEYLLTFRDSGNLAKLVEIYNF-VGKCIGKHGNTL 64
Query: 64 KKALS------VGLRTSLLTATAPKFDAVVTMENVMPLPSAYLRRKTSIIILDNDVKLNA 117
K L +GL T L++ PK V ++ + LP +I + ++ A
Sbjct: 65 KDKLIFYAERVIGL-TELISNVKPK---VAIAKHSVELPRVAFGLNIPVIFVVDNEHAEA 120
Query: 118 PQSIFQRLENRVKKLAKYVLVPEIAYDE--FSRFFGKDILTYPGIKEHVSISD-----YV 170
+ L + + K IA DE F G++ +++ G E +++ Y
Sbjct: 121 QNKLTLPLADEIIK--------PIATDENKLKEFGGRNFISFEGTCEVANVNSRLKGYYP 172
Query: 171 PDPEFLSKVPF---EEYIVLRPESLASHYVLEKESIVPELLDMFTKE-GVNIIYLPRNKA 226
D E L K+ IV+RP +S Y + I+P++++ K NI+ PR++
Sbjct: 173 IDNEILKKLGICDDNPTIVMRPCPNSS-YCNGHKDILPKIIEKLQKRIDCNIVVFPRDEH 231
Query: 227 ERALSRGFEVYIPPKPLNGLDLSYYSNAVLTGSGTMAREAALLGVLAVSFFPGKQLLAID 286
++ + R +P + ++ L L Y S+ ++ GTM RE+A+LG+ VS +P ++LL +D
Sbjct: 232 QKEIYREVNAIVPKETIDALSLLYNSDFMIGAGGTMNRESAILGIPTVSCYP-QELLGVD 290
Query: 287 KYLIEKGEIFHSRDPRAIVEYVISNLKVR 315
KYLIEK + H+ D + I+ YV NL R
Sbjct: 291 KYLIEKDRMIHTNDIKEIINYVEDNLGKR 319
>pir||F75173 hypothetical protein PAB2000 - Pyrococcus abyssi (strain Orsay)
>gi|5457979|emb|CAB49469.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 370
Score = 93.2 bits (228), Expect = 4e-18
Identities = 92/335 (27%), Positives = 158/335 (46%), Gaps = 39/335 (11%)
Query: 4 RVWIDIANTAEIPFFKPIISELKHK-YQIYLTCWKRGEVPELLRSLGFQVKPILSDFADP 62
+VWIDI N+ FFK II EL+ + +++ +T + + ++L LG +
Sbjct: 2 KVWIDIMNSPHAHFFKGIIRELERRGFEVLVTTREFDGLTQILDMLGIDYISVGKHGGVT 61
Query: 63 IK-KALSVGLRTSLLTATA--PKFDAVVTMENVMPLPSAYLRRKTSIIILDNDVKLNAPQ 119
++ K L+ R L+ K D + N A+ + SI +DN+ + +
Sbjct: 62 LEGKLLASAERVYKLSKLIIEEKPDIAMYKNNPEAPRIAFGLKIRSIGFVDNETAIPQNK 121
Query: 120 SIFQRLENRVKKLAKYVLVPEI--AYDEFSRFFGKD---ILTYPGIKEHVSISDYVPDPE 174
+F E +L P++ AY+ G D ++ I E ++ + PD
Sbjct: 122 LMFPFTER--------LLYPKVIDAYELLK--CGADPNSLVPVNSIAEVANVYGFRPDDS 171
Query: 175 FLSKVPFEEY--IVLRPESLASHYVLEK------ESIVPELLDMFTKEGVNIIYLPRNKA 226
L ++ E+Y IV+RPE + + Y E ++P L DM I+ PR++
Sbjct: 172 VLKELGLEKYSYIVMRPEPIKATYFNGDRERSILEDVIPLLPDM------PIVLFPRSEE 225
Query: 227 ERALSRGFE-VYIPPKPLNGLDLSYYSNAVLTGSGTMAREAALLGVLAVSFFPGKQLLAI 285
++ + FE V IP ++ + L +Y+ ++ GTM REA LG A+S +PG+ LLA+
Sbjct: 226 QKKVFERFENVIIPDNVVDTMSLLFYARIMIGAGGTMNREALALGTPAISTYPGR-LLAV 284
Query: 286 DKYLIEKGEIFHSRDPRAIV----EYVISNLKVRK 316
K+LIE G ++HS +P + E + N + RK
Sbjct: 285 TKWLIELGVLYHSTNPIEVATKAWEIIRRNRRYRK 319
>pir||D69204 conserved hypothetical protein MTH781 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621871|gb|AAB85283.1| (AE000856) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 357
Score = 92.4 bits (226), Expect = 7e-18
Identities = 89/355 (25%), Positives = 166/355 (46%), Gaps = 31/355 (8%)
Query: 4 RVWIDIANTAEIPFFKPIISELKHKYQ-IYLTCWKRGEVPELLRSLGFQVKPILSDFADP 62
++WIDI N + FF+ +I+ + + + + +T K G++ L++ GF+ I
Sbjct: 17 KIWIDITNAPHVRFFRDVITYFQEEGEDVIITARKFGDIHRLMKLFGFEFTSIGKHGVTL 76
Query: 63 IKKALSVGLRTSLLTATAPKFDAVVTMENVMPLPSAYLRRKT------SIIILDNDVKLN 116
+K + R L+ KF A + + S L R T S+ +LDN+ L
Sbjct: 77 SEKLIESTKRAYNLS----KFIAEQRPDVGLSKHSIELPRVTFGLGIPSVYVLDNEHALA 132
Query: 117 APQSIFQRLENRVKKLAKYVLVPEIAYDEFSRFFGKD---ILTYPGIKEHVSISDYVPDP 173
A + +N +++PE+ G D I Y G E + ++ +
Sbjct: 133 ANKLTLPLCDN--------IIMPEVIDLWDIMKTGADPNRIRRYRGTSEIIHFQNFEYNE 184
Query: 174 EFLS----KVPFEEYIVLRPE-SLASHYVLE-KESIVPELLDMFTKEGVNIIYLPRNKAE 227
K+ E+ I++RPE SLAS+ + ES++ ++++ K+ NI+ +PR + +
Sbjct: 185 NIFEDLNLKLEREKTILMRPEPSLASYLDADCHESVLTPIVEVL-KDYANILIIPRFREQ 243
Query: 228 RALSRGFE-VYIPPKPLNGLDLSYYSNAVLTGSGTMAREAALLGVLAVSFFPGKQLLAID 286
+ G++ V I P++ L + V+ GTM REAALLG +S +PGK L++D
Sbjct: 244 AEIFEGYDNVTIIKPPVDTFSLMKRCDLVIGAGGTMNREAALLGTPVISCYPGKP-LSVD 302
Query: 287 KYLIEKGEIFHSRDPRAIVEYVISNLKVRKKPKVKEGKKIKAYIISLINDLIDGS 341
++ I+ G ++ S D IV + L +++ K + I+ ++ + + S
Sbjct: 303 RFYIDNGLMYRSTDVDEIVNTALRLLVSKREQKKLRTDDLFRIIVDMVYEAAESS 357
>pir||C71041 hypothetical protein PH1619 - Pyrococcus horikoshii
>gi|3258048|dbj|BAA30731.1| (AP000006) 370aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 370
Score = 91.3 bits (223), Expect = 1e-17
Identities = 89/310 (28%), Positives = 150/310 (47%), Gaps = 23/310 (7%)
Query: 4 RVWIDIANTAEIPFFKPIISEL-KHKYQIYLTCWKRGEVPELLRSLGFQVKPILSDFADP 62
+VWIDI N+ FFK II EL K +++ +T + + ++L LG I
Sbjct: 2 KVWIDIMNSPHAHFFKGIIRELEKRGFEVLVTTREFDGLTQILDMLGIDYISIGKHGGAT 61
Query: 63 IK-KALSVGLRTSLLTATA--PKFDAVVTMENVMPLPSAYLRRKTSIIILDNDVKLNAPQ 119
++ K L+ R L+ K D + N A+ + SI +DN+ + +
Sbjct: 62 LEGKLLASAERVYKLSKLIIEEKPDLAIYKNNPEAPRIAFGLKIPSIGFVDNETAVPQNK 121
Query: 120 SIFQRLENRV---KKLAKYVLVPEIAYDEFSRFFGKDILTYPGIKEHVSISDYVPDPEFL 176
+F NR+ K + Y L+ D S + GI E +I + P+ L
Sbjct: 122 LMFP-FTNRLLYPKPIDAYELL-RCGADPNS------LRPVNGIAEIANIYGFKPEDTVL 173
Query: 177 SKVPFEEY--IVLRPESLASHYVL--EKESIVPELLDMFTKEGVNIIYLPRNKAERALSR 232
++ ++Y IV+RPE + + Y + SI+ +++ + + II PR +R +
Sbjct: 174 KELGVKKYSYIVMRPEPIKATYFNGDRERSILEDIIPLLPD--LPIILFPRTDEQREIFE 231
Query: 233 GFE-VYIPPKPLNGLDLSYYSNAVLTGSGTMAREAALLGVLAVSFFPGKQLLAIDKYLIE 291
F+ + IP K ++ L L +Y+ ++ GTM REA LG A+S +PGK LLA+ K+LI+
Sbjct: 232 KFDNIIIPEKAVDTLTLLFYAKLMVGAGGTMNREALALGTPAISTYPGK-LLAVTKWLID 290
Query: 292 KGEIFHSRDP 301
G ++HS +P
Sbjct: 291 LGVLYHSTNP 300
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.400
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125514513
Number of Sequences: 2977
Number of extensions: 5270513
Number of successful extensions: 11948
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 11940
Number of HSP's gapped (non-prelim): 6
length of query: 344
length of database: 189,106,746
effective HSP length: 56
effective length of query: 288
effective length of database: 155,591,474
effective search space: 44810344512
effective search space used: 44810344512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)