BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1590 (PAB1590) DE:Hypothetical protein
(695 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75099 hypothetical protein PAB1590 - Pyrococcus abyssi (st... 1386 0.0
pir||E69143 hypothetical protein MTH339 - Methanobacterium therm... 193 5e-48
>pir||E75099 hypothetical protein PAB1590 - Pyrococcus abyssi (strain Orsay)
>gi|5458610|emb|CAB50098.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 695
Score = 1386 bits (3547), Expect = 0.0
Identities = 695/695 (100%), Positives = 695/695 (100%)
Query: 1 MDRKSLIITMSVLLGLNSAILADYLGVHIPLARQIFGFIALTFFPGYLLLKIFRTRLESF 60
MDRKSLIITMSVLLGLNSAILADYLGVHIPLARQIFGFIALTFFPGYLLLKIFRTRLESF
Sbjct: 1 MDRKSLIITMSVLLGLNSAILADYLGVHIPLARQIFGFIALTFFPGYLLLKIFRTRLESF 60
Query: 61 SEKIFLSVALSISVVMLMGIFANFVYPLLGVEKPITLLPILLTFNVVTLGLLAVEQARTV 120
SEKIFLSVALSISVVMLMGIFANFVYPLLGVEKPITLLPILLTFNVVTLGLLAVEQARTV
Sbjct: 61 SEKIFLSVALSISVVMLMGIFANFVYPLLGVEKPITLLPILLTFNVVTLGLLAVEQARTV 120
Query: 121 PMLNTRRQIRIAKWDLFFALLPVWSLIGAYLFSHYGDNSGLLLLYFVIALTPLVFLKSKN 180
PMLNTRRQIRIAKWDLFFALLPVWSLIGAYLFSHYGDNSGLLLLYFVIALTPLVFLKSKN
Sbjct: 121 PMLNTRRQIRIAKWDLFFALLPVWSLIGAYLFSHYGDNSGLLLLYFVIALTPLVFLKSKN 180
Query: 181 FNRTFAIWSIAISLMWSTVFGVSWNYIWGYDINGEYYYANLVLARGIWSISTYDQYNTIA 240
FNRTFAIWSIAISLMWSTVFGVSWNYIWGYDINGEYYYANLVLARGIWSISTYDQYNTIA
Sbjct: 181 FNRTFAIWSIAISLMWSTVFGVSWNYIWGYDINGEYYYANLVLARGIWSISTYDQYNTIA 240
Query: 241 SVNILGPVYSLILNMWIVPIFKIIYPLVFSLVPVILLKAYERLLGNKIWAELSVLFFMFF 300
SVNILGPVYSLILNMWIVPIFKIIYPLVFSLVPVILLKAYERLLGNKIWAELSVLFFMFF
Sbjct: 241 SVNILGPVYSLILNMWIVPIFKIIYPLVFSLVPVILLKAYERLLGNKIWAELSVLFFMFF 300
Query: 301 FQFFVSNMALARMMIVEVYLALLAYATIRKINPLFLILFLASLAVSHYGTAYLTMFALLT 360
FQFFVSNMALARMMIVEVYLALLAYATIRKINPLFLILFLASLAVSHYGTAYLTMFALLT
Sbjct: 301 FQFFVSNMALARMMIVEVYLALLAYATIRKINPLFLILFLASLAVSHYGTAYLTMFALLT 360
Query: 361 LPLIRVLENEQRISNKLIAVFWVVTLLWYAYVGGGFQFNNLVIIGYQTLLMLKDLFNPQY 420
LPLIRVLENEQRISNKLIAVFWVVTLLWYAYVGGGFQFNNLVIIGYQTLLMLKDLFNPQY
Sbjct: 361 LPLIRVLENEQRISNKLIAVFWVVTLLWYAYVGGGFQFNNLVIIGYQTLLMLKDLFNPQY 420
Query: 421 SQGLELIVAKMTFMREIAKLINLFAQGLISIGVLTVLNRLIRGRKVKHLEFYALSFAFFA 480
SQGLELIVAKMTFMREIAKLINLFAQGLISIGVLTVLNRLIRGRKVKHLEFYALSFAFFA
Sbjct: 421 SQGLELIVAKMTFMREIAKLINLFAQGLISIGVLTVLNRLIRGRKVKHLEFYALSFAFFA 480
Query: 481 YDIAGIVVPYFSNRMNVNRLYHLTQFFIAPYLLIGFDSVKRIMNNLSKNRHTLPLKNSVE 540
YDIAGIVVPYFSNRMNVNRLYHLTQFFIAPYLLIGFDSVKRIMNNLSKNRHTLPLKNSVE
Sbjct: 481 YDIAGIVVPYFSNRMNVNRLYHLTQFFIAPYLLIGFDSVKRIMNNLSKNRHTLPLKNSVE 540
Query: 541 IAGVFLVVYFIFTSGWTLVIANDPKPPMWLEKVDGPYWSLSEISGGKWIAEYRYDSLKIY 600
IAGVFLVVYFIFTSGWTLVIANDPKPPMWLEKVDGPYWSLSEISGGKWIAEYRYDSLKIY
Sbjct: 541 IAGVFLVVYFIFTSGWTLVIANDPKPPMWLEKVDGPYWSLSEISGGKWIAEYRYDSLKIY 600
Query: 601 SDQYRALLFLGLINQNINEVSFRGEEKISNFPKREAYAYLGKTSVREKKILVINQKYLGT 660
SDQYRALLFLGLINQNINEVSFRGEEKISNFPKREAYAYLGKTSVREKKILVINQKYLGT
Sbjct: 601 SDQYRALLFLGLINQNINEVSFRGEEKISNFPKREAYAYLGKTSVREKKILVINQKYLGT 660
Query: 661 IKEFYYLPIYNKSIFEGLWTSNKIYSSQDVAIYKI 695
IKEFYYLPIYNKSIFEGLWTSNKIYSSQDVAIYKI
Sbjct: 661 IKEFYYLPIYNKSIFEGLWTSNKIYSSQDVAIYKI 695
>pir||E69143 hypothetical protein MTH339 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621395|gb|AAB84845.1| (AE000818)
unknown [Methanobacterium thermoautotrophicum]
Length = 694
Score = 193 bits (486), Expect = 5e-48
Identities = 166/625 (26%), Positives = 291/625 (46%), Gaps = 49/625 (7%)
Query: 3 RKSLIITMSVLLGLNSAILADYLGVHIPLARQIFGFIALTFFPGYLLLKIFRTRLESFSE 62
RK ++ + +LL + +I+AD IP+ RQ FI T PGYLLL I + ++E
Sbjct: 2 RKDILYMLLLLLITDLSIIAD-----IPVLRQSLPFIFFTIIPGYLLLGILKFKVELIDG 56
Query: 63 KIFLSVALSISVVMLMGIFANFVYPLLGVEKPITLLPILLTFNVVTLGLLAVEQARTVPM 122
+ ++ ALSI ++M+ G+ N YPL + +P++LLPIL N++ + L+ + R
Sbjct: 57 SV-IAAALSIFLMMMTGLIINSFYPL--IMRPLSLLPILSAINLLIIALMVIYHLRGEEP 113
Query: 123 LNTRRQIRIAKWDLFFALLPVWSLIGAYLFSHYGDNSGLLL--LYFVIALTPLVFLKSKN 180
LN + ++ L L PV ++IG+YL + Y N+ LLL L+ + + L K K
Sbjct: 114 LNLKASGNLST-ALSSLLFPVLTVIGSYLMNKYSVNTVLLLVLLFIPVYIILLEVFKKKI 172
Query: 181 FNRTFAIWSIAISLMWSTVFGVSWNYIWGYDINGEYYYANLVLARGIWS--ISTYDQYNT 238
T+ + +ISL + G+ NY+ G DI+ E+Y L W + +Y+ YN
Sbjct: 173 GPATYPVAIFSISLSLLIMNGLPSNYLIGRDIHWEFYLFRKALMAHHWDMHVGSYNAYNA 232
Query: 239 IASVNILGPVYSLILNMWIVPIFKIIYPLVFSLVPVILLKAYERLLGNKIWAELSVLFFM 298
SV +L +Y ++LN+ V IFK Y + +L+P+ + ER+L + + L F+
Sbjct: 233 CLSVTVLPVIYKVLLNVPEVYIFKFYYGFIGALMPLPVYLISERILKRSDYGFYATLLFI 292
Query: 299 FFFQFFVSNMALARMMIVEVYLA----LLAYATIRKINPLFLILFLASLAVSHYGTAYLT 354
F F F+ + R ++ ++ A +L R L ++F+ +SHY TAY+
Sbjct: 293 FQFS-FIYILGWCRQLVALLFFAAAVMVLTGDMRRSHKKLLFVVFMVGTVLSHYTTAYVF 351
Query: 355 MFALLTLP-LIRVL-------ENEQRISNKLIAVFWVVTLLWYAYVGGGFQFNNLVIIGY 406
F + +P L+RV+ ++ + L +F+VV WYA G F + V
Sbjct: 352 FFLVALIPILVRVMKRLKVPDDSRGFFAASLAVLFFVVVFAWYAQATGA-PFKSAVSFFT 410
Query: 407 QTLLMLKDLFNPQYSQGLELIVAKM---TFMREIAKLINLFAQGLISIGVLTVL--NRLI 461
+TL + + F+ EL V + F ++ L++ LI G L V+
Sbjct: 411 KTLRSMSEFFSADMRNNSELAVVGIGISNFPNLLSTLVHDTVFALIGAGALAVIFKEEYR 470
Query: 462 RGRKVKHLEFYALSFAFFAYDIAGIVVPYFSNRMNVNRLYHLTQFFIAPYLLIGFDSVKR 521
+GR E+ A +A I +P+ S RL+ +AP + G D++
Sbjct: 471 QGR-----EYLAAVILCMGILVAFIALPFVSKGYGGPRLFTQLLVILAPLFITGIDALTG 525
Query: 522 IMNNLSKNRHTLPLKNSVEIAGVFLVVYFIFTSGWTLVIANDPKPPMWLEKVDGPYWSL- 580
+ + R +P V L++ F T+ A P + + + Y +
Sbjct: 526 FIGRV---RWRIP------SIIVLLILLFSCTTYLNYHFAGIPYSYAYDDGGERRYETFI 576
Query: 581 --SEISGGKWIAEYRYDSLKIYSDQ 603
+E++G W++ + ++ I+ D+
Sbjct: 577 YDNEVTGALWLSNHYNETSVIHGDK 601
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.145 0.436
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 248600236
Number of Sequences: 2977
Number of extensions: 10540654
Number of successful extensions: 33155
Number of sequences better than 1.0e-10: 2
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33144
Number of HSP's gapped (non-prelim): 2
length of query: 695
length of database: 189,106,746
effective HSP length: 53
effective length of query: 642
effective length of database: 157,386,935
effective search space: 101042412270
effective search space used: 101042412270
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 168 (69.9 bits)