BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1596 (PAB1596) DE:Hypothetical protein
         (308 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75097 hypothetical protein PAB1596 - Pyrococcus abyssi (st...   622  e-177
gi|11497907 A. fulgidus predicted coding region AF0291 [Archaeog...   366  e-100

>pir||C75097 hypothetical protein PAB1596 - Pyrococcus abyssi (strain Orsay)
           >gi|5458592|emb|CAB50080.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 308
           
 Score =  622 bits (1588), Expect = e-177
 Identities = 308/308 (100%), Positives = 308/308 (100%)

Query: 1   MRLIIHHWDTDGITSAALLMKKLGEDFENLTGPIGEFRFDDRIWKEIERAEEIYVVDFNV 60
           MRLIIHHWDTDGITSAALLMKKLGEDFENLTGPIGEFRFDDRIWKEIERAEEIYVVDFNV
Sbjct: 1   MRLIIHHWDTDGITSAALLMKKLGEDFENLTGPIGEFRFDDRIWKEIERAEEIYVVDFNV 60

Query: 61  PREAEKLRVPTVFIDHHSQPRIKNPLVKHVNPVLEGRYYPSASFVVSEYLNYWNEWSALG 120
           PREAEKLRVPTVFIDHHSQPRIKNPLVKHVNPVLEGRYYPSASFVVSEYLNYWNEWSALG
Sbjct: 61  PREAEKLRVPTVFIDHHSQPRIKNPLVKHVNPVLEGRYYPSASFVVSEYLNYWNEWSALG 120

Query: 121 VVGDIGVKAFEVPRVNELLKLDREDALKLVELIDSNYIIMNRKAVEEAVRVLLENGVKDI 180
           VVGDIGVKAFEVPRVNELLKLDREDALKLVELIDSNYIIMNRKAVEEAVRVLLENGVKDI
Sbjct: 121 VVGDIGVKAFEVPRVNELLKLDREDALKLVELIDSNYIIMNRKAVEEAVRVLLENGVKDI 180

Query: 181 LEYEPWLRNVEAINKEIERALANVEVKGEIAFVEFESPFNIISKVARRLVWEEGNEIAIV 240
           LEYEPWLRNVEAINKEIERALANVEVKGEIAFVEFESPFNIISKVARRLVWEEGNEIAIV
Sbjct: 181 LEYEPWLRNVEAINKEIERALANVEVKGEIAFVEFESPFNIISKVARRLVWEEGNEIAIV 240

Query: 241 VNRNFHGKAQVYCRALNLDLKPLIEKLKVSGFNAGGKREVLGCICERGEVDKVVEVIVEE 300
           VNRNFHGKAQVYCRALNLDLKPLIEKLKVSGFNAGGKREVLGCICERGEVDKVVEVIVEE
Sbjct: 241 VNRNFHGKAQVYCRALNLDLKPLIEKLKVSGFNAGGKREVLGCICERGEVDKVVEVIVEE 300

Query: 301 LKLLQVFY 308
           LKLLQVFY
Sbjct: 301 LKLLQVFY 308


>gi|11497907 A. fulgidus predicted coding region AF0291 [Archaeoglobus fulgidus]
           >gi|7483398|pir||C69286 hypothetical protein AF0291 -
           Archaeoglobus fulgidus >gi|2650341|gb|AAB90938.1|
           (AE001084) A. fulgidus predicted coding region AF0291
           [Archaeoglobus fulgidus]
           Length = 314
           
 Score =  366 bits (930), Expect = e-100
 Identities = 180/306 (58%), Positives = 233/306 (75%), Gaps = 9/306 (2%)

Query: 1   MRLIIHHWDTDGITSAALLMKKLG-EDFENLTGPIGEFRFDDRIWKEIERAEEIYVVDFN 59
           M LIIHHWDTDGITSAALL+K L  ++F N++ PIGEFRFDDRI K IE AE +Y++D N
Sbjct: 4   MNLIIHHWDTDGITSAALLIKALELDEFRNMSPPIGEFRFDDRIRKAIEHAERVYILDLN 63

Query: 60  VPREAEKLRVPTVFIDHHSQPRIKNPLVKHVNPVLEGRYYPSASFVVSEYLNYWNEWSAL 119
           +P + E +   TVFIDHH QP+IKNP V+ +NP LEG+  PSASFVVSEY + WN W+AL
Sbjct: 64  LPYDVEGIEKETVFIDHHIQPKIKNPRVRQINPSLEGKESPSASFVVSEYFDVWNTWTAL 123

Query: 120 GVVGDIGVKAFEVPRVNELLK---LDREDALKLVELIDSNYIIMNRKAVEEAVRVLLENG 176
           G VGD+G KAF++P+V ELL    L RE+ LK++ELIDSNYI M+RK VE+AV+V+LEN 
Sbjct: 124 GAVGDVGEKAFKIPKVVELLNKEGLAREEVLKVIELIDSNYIAMDRKGVEQAVKVVLENS 183

Query: 177 VKDILEYEPWLRNVEAINKEIERALANVEVKGEIAFVEFESPFNIISKVARRLVWEEGNE 236
            KD+L ++PW++  +A+   I+ AL+NVEV+  IA++ FESPFNIISKVAR+ VWE G +
Sbjct: 184 EKDLLTHKPWIKRAKAVGDAIQDALSNVEVRDGIAYITFESPFNIISKVARKAVWELGYD 243

Query: 237 IAIVVNRNFHGKAQVYCR-----ALNLDLKPLIEKLKVSGFNAGGKREVLGCICERGEVD 291
            A+ VN NFH KAQVY R     A  +++  +I KL+   FNAGGK+EVLGC+CER  V+
Sbjct: 244 GALAVNGNFHKKAQVYFRVSPDIAEKVNMHKIISKLREKDFNAGGKKEVLGCVCERDRVE 303

Query: 292 KVVEVI 297
           +V+ VI
Sbjct: 304 EVLGVI 309


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114626921
Number of Sequences: 2977
Number of extensions: 4840279
Number of successful extensions: 12960
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12955
Number of HSP's gapped (non-prelim): 2
length of query: 308
length of database: 189,106,746
effective HSP length: 54
effective length of query: 254
effective length of database: 156,788,448
effective search space: 39824265792
effective search space used: 39824265792
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 165 (68.7 bits)