BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1597 (PAB1597) DE:Hypothetical protein
(348 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (st... 694 0.0
pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (st... 359 2e-98
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 324 1e-87
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 318 5e-86
pir||C72308 conserved hypothetical protein - Thermotoga maritima... 282 3e-75
pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii ... 264 1e-69
pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (st... 263 2e-69
pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (st... 256 4e-67
pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (st... 234 1e-60
pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (st... 222 4e-57
gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfat... 206 3e-52
gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfat... 129 4e-29
gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfat... 123 2e-27
gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfat... 90 3e-17
pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus... 90 3e-17
pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (st... 90 4e-17
gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfat... 89 6e-17
pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (st... 86 7e-16
gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfat... 85 2e-15
pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii ... 83 4e-15
gb|AAK41444.1| Conserved hypothetical protein [Sulfolobus solfat... 74 2e-12
>pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (strain Orsay)
>gi|5458591|emb|CAB50079.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 348
Score = 694 bits (1772), Expect = 0.0
Identities = 348/348 (100%), Positives = 348/348 (100%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI
Sbjct: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
Query: 61 YIDVRKAMKGGRVSEERLKLQLLGNIRRLRINIPGIKLEPTPLDMTDIFDLLNSYGRKRR 120
YIDVRKAMKGGRVSEERLKLQLLGNIRRLRINIPGIKLEPTPLDMTDIFDLLNSYGRKRR
Sbjct: 61 YIDVRKAMKGGRVSEERLKLQLLGNIRRLRINIPGIKLEPTPLDMTDIFDLLNSYGRKRR 120
Query: 121 KIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSGSEVGLLHDFLGFDDSK 180
KIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSGSEVGLLHDFLGFDDSK
Sbjct: 121 KIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSGSEVGLLHDFLGFDDSK 180
Query: 181 APLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVAVDELDGVPGWLVEYGY 240
APLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVAVDELDGVPGWLVEYGY
Sbjct: 181 APLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVAVDELDGVPGWLVEYGY 240
Query: 241 HYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAILKAISLGINRWSKIKEYVEA 300
HYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAILKAISLGINRWSKIKEYVEA
Sbjct: 241 HYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAILKAISLGINRWSKIKEYVEA 300
Query: 301 KHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVERVIRSL 348
KHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVERVIRSL
Sbjct: 301 KHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVERVIRSL 348
>pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (strain Orsay)
>gi|5458414|emb|CAB49902.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 359 bits (912), Expect = 2e-98
Identities = 181/367 (49%), Positives = 253/367 (68%), Gaps = 25/367 (6%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
MLFDP+PKE++ED+FDRE+E+ E+ S+I YPITL+LGIRR GKSS++K LNE++ GI
Sbjct: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEMEG-GI 59
Query: 61 YIDVRKAM--KGGRVS---------------EERLKLQLLGNIRRLR-INIPGIKLEPTP 102
YIDVRK GG ++ +E K L+ +++ + I++ G+K+ T
Sbjct: 60 YIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISSLKSIEGISVSGVKVRFTH 119
Query: 103 -LDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFL 161
+ ++ + + LN G ++LAFDEAQY +FYG G ++FL VAY+YDN + F+
Sbjct: 120 RVSLSSLLERLNEQGE-----VILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSFV 174
Query: 162 FSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHI 221
F+GSEVGLLHDF+G D +P++GR+Y E+T+EPF R+ SI FLR GF E + V +E I
Sbjct: 175 FTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEEI 234
Query: 222 EVAVDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAIL 281
+ AVD L G+PGWLVE+GYHYV EA+ L+ A L++ EL EL++RS RYV +L
Sbjct: 235 KEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLVL 294
Query: 282 KAISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVV 341
KAISLG NRW IKE+VEA+ G I N+R +++L+NL+ MSWIR +D K Y+I+DPVV
Sbjct: 295 KAISLGFNRWKSIKEFVEARSGRIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDPVV 354
Query: 342 ERVIRSL 348
ER+I+ L
Sbjct: 355 ERIIKEL 361
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 324 bits (821), Expect = 1e-87
Identities = 174/356 (48%), Positives = 234/356 (64%), Gaps = 17/356 (4%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
MLFD +PK R+ED+FDREEE +L S+ YP+TLLLGIRR GKSS+++ LNE GI
Sbjct: 1 MLFDLRPKTRREDIFDREEEFRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNERP--GI 58
Query: 61 YIDVRKAM-KGGRVSEERLKLQLLGNIR---------RLRINIPGIKLEPTPLDMTDIFD 110
ID R+ + G ++ E L +L I ++ +N+ + LEP L + ++F
Sbjct: 59 LIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFR 118
Query: 111 LLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSGSEVGLL 170
LN G + + IV AFDEAQY RFYGSRGG++ L AY+YD+ ++ + +GSEVGLL
Sbjct: 119 ELNDLGEELGEFIV-AFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLL 177
Query: 171 HDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVAVDELDG 230
HDFL D ++PL+GRI E+ ++PF +D S+EFL+ GFREVNL+VP+ IE AV+ LDG
Sbjct: 178 HDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDG 237
Query: 231 VPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAILKAISLGINR 290
+PGWLV +G Y+ D A++RTL+ A LI EL EL RRS RYV IL+AI+LG NR
Sbjct: 238 IPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNR 297
Query: 291 WSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVERVIR 346
WS I++Y+ K I R ALL+NL+KM+WI E Y+I DPVV V+R
Sbjct: 298 WSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE----DNTYKIADPVVATVLR 349
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 318 bits (807), Expect = 5e-86
Identities = 175/352 (49%), Positives = 237/352 (66%), Gaps = 17/352 (4%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
MLFD +PKER+ED+FDRE+E +L SI YP+TLLLGIRR GKSS++K L+E GI
Sbjct: 1 MLFDLRPKERREDIFDREKEFKKLEKSIEDYPMTLLLGIRRVGKSSLLKAYLSENP--GI 58
Query: 61 YIDVRKAM-KGGRVSEERL--KLQLLGNIR-------RLRINIPGIKLEPTPLDMTDIFD 110
ID R+ + G ++ L KLQ GNI ++ +++ +K+EP + + DIF+
Sbjct: 59 LIDCRELYGERGHITRIDLIRKLQERGNIVQKLLSRFKVSLDLKFLKIEPKEVSLMDIFE 118
Query: 111 LLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSGSEVGLL 170
LN G+K K VLAFDEAQY RFYGSRGG+D L AY+YDN E ++ + +GSEVGLL
Sbjct: 119 SLNEIGKKMGKF-VLAFDEAQYLRFYGSRGGKDLLALFAYAYDNLENLKIVLTGSEVGLL 177
Query: 171 HDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVAVDELDG 230
HDFLG +D ++PL+GR+ E+ +EPF LS EFL+ GFREVNLNV E IE A++ LDG
Sbjct: 178 HDFLGINDYESPLYGRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEIIEKAIEMLDG 237
Query: 231 VPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAILKAISLGINR 290
+PGWLV +G Y+ +D+ +A++RT + A LI EL ELE+RS RY+ IL+ I+LG NR
Sbjct: 238 IPGWLVLFGVEYMREKDYEKAMKRTFEVAKGLILGELRELEKRSRRYLEILRGIALGYNR 297
Query: 291 WSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVE 342
WS I++Y+ K R LL NL+KM WI +G+ Y + DP+V+
Sbjct: 298 WSLIRDYLAVKGIPTPEPRLYELLNNLKKMGWINE--VEGK--YILSDPLVK 345
>pir||C72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981538|gb|AAD36076.1|AE001762_3 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 365
Score = 282 bits (715), Expect = 3e-75
Identities = 155/364 (42%), Positives = 219/364 (59%), Gaps = 23/364 (6%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
+LF PK +KEDLFDRE EL +L + YPI ++ G+RR GKSS++KV LN+ D + I
Sbjct: 6 LLFSLTPKTKKEDLFDRERELKDLEKLLETYPIVVITGLRRVGKSSLVKVFLNKSDLLHI 65
Query: 61 YIDVRKAMK--GGRVSEERLK----------------LQLLGNIRRLRINIPGIKLEPTP 102
+D R+ + GG +S L L +L +R + ++ I+L P
Sbjct: 66 TVDGRRLYETSGGNISSHHLTRFLGEELSRISKSQKLLNVLKRVRGITVSGTSIELNPKE 125
Query: 103 LDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLF 162
++D+ + LN ++R+K IV+ FDEAQY R+YGSRGG D L AY YDN E +RF+
Sbjct: 126 FSLSDLLEKLNETAKRRKKKIVIFFDEAQYLRYYGSRGGNDLLALFAYCYDNFENVRFII 185
Query: 163 SGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIE 222
SGSEVG+LHDFL +D +PL GR +T+ PF D S++FL EGFREV + + +E
Sbjct: 186 SGSEVGVLHDFLKLEDYSSPLHGRGIGFLTVRPFTFDQSVDFLMEGFREVGEKINFD-VE 244
Query: 223 VAVDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAILK 282
V E+DG+ G+LV +G Y+ + EAL+ +L E+ EL +RSERY IL+
Sbjct: 245 EIVREIDGIVGYLVLFGVKYLEKKKKDEALKEVFHAVKALFEKEMEELRKRSERYPFILR 304
Query: 283 AISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVE 342
I+ GIN WS +K AK I ++R +LL+ LEKMS+I + + YRIVDPV E
Sbjct: 305 QIARGINTWSALKNIFRAKGDFIGDSRLYSLLETLEKMSFI----EKTQSGYRIVDPVFE 360
Query: 343 RVIR 346
R++R
Sbjct: 361 RILR 364
>pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii
>gi|3256945|dbj|BAA29628.1| (AP000002) 362aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 362
Score = 264 bits (668), Expect = 1e-69
Identities = 152/366 (41%), Positives = 227/366 (61%), Gaps = 30/366 (8%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYP-ITLLLGIRRTGKSSIIKVSLNEIDAIG 59
MLF P PK ++E+LFDRE+EL E+ ++ + + LLLG RR GKSSI+ V+L+E+
Sbjct: 4 MLFSPYPKVKREELFDREKELKEIEEAVKRGERLLLLLGPRRIGKSSILNVALSELPYPS 63
Query: 60 IYIDVRK-------------------AMKGGRVSEERLKLQLLGNIRRLRINIPGIKLEP 100
+ +DVRK A++G + E ++ L ++ +RI+ I++ P
Sbjct: 64 VKVDVRKVYSEYSSVNRYIIGKMLLSALRGRKRLFEEARM-FLEKVKGVRISGVNIEINP 122
Query: 101 TPLDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRF 160
+ ++ ++LN YG ++ +II+ AFDEAQY RF G+ + +AY+ DN E + F
Sbjct: 123 KGFSLAELLEVLNEYGSEKGRIII-AFDEAQYLRFGGATRYDGI---IAYAIDNLENLTF 178
Query: 161 LFSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEH 220
+ +GSEVGLL+DFL F+D KAPLFGR +++I ++ F D+S+EFL GFRE + V +
Sbjct: 179 ILTGSEVGLLYDFLKFEDPKAPLFGRYHHDIFIQRFSSDMSLEFLMAGFREAGVEVERRE 238
Query: 221 IEVAVDELDGVPGWLVEYGYHYVHTR-DHREALERTLQNALSLIRSELSELERRSERYVA 279
+E AV+ELDG+PGWL YGY V + +H + + ++ A S++ ELS L S RY
Sbjct: 239 LEKAVEELDGIPGWLALYGYIRVTKKLNHEDCMLEVIKEASSIVNKELSRLFSYSPRYRF 298
Query: 280 ILKAISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDP 339
ILKAI+LG +RW IK+Y+ K G I +A FS LL NL K ++ E +DGR Y I DP
Sbjct: 299 ILKAIALGYSRWRDIKDYLTLKVGPINDANFSKLLDNLVKHGYV--ERRDGR--YVITDP 354
Query: 340 VVERVI 345
V+ +V+
Sbjct: 355 VLRKVL 360
>pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (strain Orsay)
>gi|5458936|emb|CAB50423.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 357
Score = 263 bits (665), Expect = 2e-69
Identities = 160/365 (43%), Positives = 231/365 (62%), Gaps = 25/365 (6%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYP-ITLLLGIRRTGKSSIIKVSLNEIDAIG 59
MLF P PK ++E+LFDRE+EL EL +I + LLLG+RR GKSS++ V+L E+
Sbjct: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
Query: 60 IYIDVRKAMKG---------GRVSEERL--KLQLLGN-IRRLR-INIPGIKLEPTPLDMT 106
I +DVRK GR+ + KL+ N +RR++ I+I G++++ +P D +
Sbjct: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKLEEAKNFLRRVKGISISGVRIDVSPRDFS 120
Query: 107 --DIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSG 164
++ + LN YG + ++I+ AFDEAQY RF G+ + L AY+ DN + + F+ +G
Sbjct: 121 IVELLEALNDYGERTGRVII-AFDEAQYLRFGGATRYDGIL---AYAIDNLDNLTFILTG 176
Query: 165 SEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVA 224
SEVGLL DFL F++ APLFGR +++I LE F ++S EFL +GF E+ V + IE A
Sbjct: 177 SEVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKA 236
Query: 225 VDELDGVPGWLVEYGYHYVHTR-DHREALERTLQNALSLIRSELSELERRSERYVAILKA 283
V+ELDG+ GWL YGY V + H +A+E L+ A ++ +ELS L S RY ILKA
Sbjct: 237 VEELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKA 296
Query: 284 ISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVER 343
ISLG +RW IK+Y+ K G I ++ FS+LL+NL K ++ E ++GR Y+I DPV+ER
Sbjct: 297 ISLGYSRWRDIKDYLTLKLGYINDSNFSSLLENLVKSGYV--EKRNGR--YKISDPVLER 352
Query: 344 VIRSL 348
V R L
Sbjct: 353 VFREL 357
>pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (strain Orsay)
>gi|5458722|emb|CAB50209.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 256 bits (646), Expect = 4e-67
Identities = 161/368 (43%), Positives = 216/368 (57%), Gaps = 28/368 (7%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYP-ITLLLGIRRTGKSSIIKVSLNE----- 54
MLFDP+PK K+DL+DRE EL E ++ I LLLGIRR GKSS++ V L E
Sbjct: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
Query: 55 --IDAIGIYI-------DV--RKAMKGGRVSEERLKLQLLGNIRRLR-INIPGIKLE-PT 101
+D +Y DV RK ++ SE+ L L L + ++ I I GI +E
Sbjct: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
Query: 102 PLDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFL 161
D+ IF+ ++ + + K +V+AFDEAQY R G R + +AY+ DN I F+
Sbjct: 121 RQDLPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVR----YDGLIAYAIDNLPNIIFI 176
Query: 162 FSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHI 221
+GSEVG+LHDFLG D+ K PLFGR Y EI L+ F RD S +FLR GF E+N N+P E I
Sbjct: 177 LTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEI 236
Query: 222 EVAVDELDGVPGWLVEYGY-HYVHTRDHREALERTLQNALSLIRSELSELERRSERYVAI 280
E V+ +DG+ GWL YGY V E+L A +LI ELS + S+RY I
Sbjct: 237 EEVVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFI 296
Query: 281 LKAISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPV 340
LKA++LG RW IKEYVE + G I +A+FS LLKNL K ++ E +DG Y I DP+
Sbjct: 297 LKAVALGNTRWKNIKEYVEFRTGRINDAKFSNLLKNLVKYGYL--EKRDGE--YIIPDPL 352
Query: 341 VERVIRSL 348
V+ ++ +L
Sbjct: 353 VKEIVANL 360
>pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (strain Orsay)
>gi|5458034|emb|CAB49524.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 354
Score = 234 bits (590), Expect = 1e-60
Identities = 150/369 (40%), Positives = 216/369 (57%), Gaps = 38/369 (10%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITK-YPITLLLGIRRTGKSSIIKVSLNEIDAIG 59
MLF+PKPK R+EDL++REEEL+E+ SI K P+ +LLGIRR GKSS++ V+LNEI
Sbjct: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
Query: 60 IYIDVRKAMKG-GRVSE-----------------ERLKLQLLGNIRRLRINIPGIKLE-- 99
+ ID RK G V ER+K +L IR ++I G+ LE
Sbjct: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIK-DVLKGIRG--VSIGGVNLELR 117
Query: 100 -PTPLDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWI 158
+ ++++ + +NS G + V+A DEAQY RF ++ + ++++ D+ I
Sbjct: 118 TNKSVSLSEVLERINSLGER----FVIAIDEAQYLRFSNAKYPD----LISWAIDDLGNI 169
Query: 159 RFLFSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQ 218
F+ +GSEVGLL DFL D ++PLFGR + EI L F R S++FLR+GF EV + V +
Sbjct: 170 SFILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEE 229
Query: 219 EHIEVAVDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSELERRSERYV 278
E +E VDELDG+ GWL YGY+ HR+AL++ ++A LI +E S+L+ S RY
Sbjct: 230 EELEEVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYE 289
Query: 279 AILKAISLGINRWSKIKEYVEAKHGS-ITNARFSALLKNLEKMSWIRAELKDGRKVYRIV 337
+KA++ G +RW +IKE VE G I + FS +L NL + + L+ K Y I
Sbjct: 290 LAMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDY----LEKTTKGYFIP 345
Query: 338 DPVVERVIR 346
DP+VE R
Sbjct: 346 DPLVELAFR 354
>pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (strain Orsay)
>gi|5458924|emb|CAB50411.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 387
Score = 222 bits (561), Expect = 4e-57
Identities = 143/370 (38%), Positives = 224/370 (59%), Gaps = 33/370 (8%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSIT-KYPITLLLGIRRTGKSSIIKVSLNEIDAIG 59
+ FD +PK ++EDL+DREEEL EL++ I + P+ +L GIRR GK+S+++V+LNE
Sbjct: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
Query: 60 IYIDVRKAMKGGRVSEERLKLQLLGNIRRLR-----------------INIPGIKLEPTP 102
+ +D+R R + L+ Q N LR I++ G + +
Sbjct: 84 VIVDLRGVNPNSR-RDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSGISVSGFSVSISW 142
Query: 103 LDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLF 162
++ ++ L+++ R+ V+A DE Q R G++ +A+ YD E + F+
Sbjct: 143 KNLETLYSLISALEREN---FVIALDEVQEAR---GLVGKELASLIAHFYDYGE-VTFVL 195
Query: 163 SGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIE 222
+GSEVGLL+DFLG D+ +APL+GR ++EI L+ F R+ SIEFLREGFR+V V E ++
Sbjct: 196 TGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEILK 255
Query: 223 VAVDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSE-LERR---SERYV 278
+AV+ LDG+ GWLV++G + + RE LER L+ A +L+ SEL + L++R +RY+
Sbjct: 256 LAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIARKRYL 315
Query: 279 AILKAISLGINRWSKIKEYVE-AKHGSITNARFSALLKNLEKMSWIRAELKDGRKV-YRI 336
+LKAI+ G WS+IKE +E + I++ R + +L +L K S I ++ +GR V YRI
Sbjct: 316 IVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIE-KVVEGRNVRYRI 374
Query: 337 VDPVVERVIR 346
VDPV+E +R
Sbjct: 375 VDPVLEFALR 384
>gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 206 bits (519), Expect = 3e-52
Identities = 125/354 (35%), Positives = 202/354 (56%), Gaps = 33/354 (9%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
MLFD PK+ ++D FDRE+E+ +L + PITL+LG+RRTGKSSIIK+ +NE++ I
Sbjct: 1 MLFDTSPKDNRKDFFDREKEIEKLKG--LRAPITLVLGLRRTGKSSIIKIGINELNLPYI 58
Query: 61 YIDVRKAMKGGRVSEERLKLQLLGNIRRLRINIPG-----------------IKLEPTPL 103
Y+D+RK + +S + L+L I +L +P IK
Sbjct: 59 YLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRK 118
Query: 104 DMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFS 163
D +LL S+ + + +++ DEAQ G + L A+AY+YDN + I+F+ S
Sbjct: 119 DRLSFANLLESFEQASKDNVIIVLDEAQELV---KLRGVNLLPALAYAYDNLKRIKFIMS 175
Query: 164 GSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEV 223
GSE+GLL+D+L +D ++PLFGR ++ + L+PF R+ +IEFLR GF+E +++ + EV
Sbjct: 176 GSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDF--KDYEV 233
Query: 224 AVDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSEL----ERRSERYVA 279
+++ G+PGWL +G+ Y+ ++ A+ +TL+ A LI E E +RY+
Sbjct: 234 VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYLN 293
Query: 280 ILKAISLGINRWSKIKEYVEAKHG-SITNARFSALLKNLEKMSWIRAELKDGRK 332
I++ +S +WS +K +E + G I+++ L L K SWI +K+G K
Sbjct: 294 IMRTLS-KCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWI---IKEGEK 343
>gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 387
Score = 129 bits (322), Expect = 4e-29
Identities = 93/315 (29%), Positives = 155/315 (48%), Gaps = 34/315 (10%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
MLF+ +PKE ++DL+DRE+E+ + SI + +LG+RR GK+S++ V++ EI AI +
Sbjct: 1 MLFNTRPKEDRKDLYDREKEIEMIKDSIARGEWIAVLGMRRIGKTSVVNVAVKEIGAIKV 60
Query: 61 YIDVRKAMKGGR---------------VSEERLKLQLLGNIRRLRINIPGIKLEPTP--- 102
I++ + + ++E +LG + +L NI G++ T
Sbjct: 61 SINLMRIHDSRKKQYPKHVLISLLIEEINEAIKNYTILGKVAKLLSNILGVEEIQTNKVR 120
Query: 103 --------LDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDN 154
D+T I ++S R +K +V+ DEAQ G DF YDN
Sbjct: 121 AKLTKIRGTDITYIIREMDSIARDNKKQLVIILDEAQEL---AKVNGLDFPSIFHDVYDN 177
Query: 155 HEWIRFLFSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNL 214
+ +F+GS V L+ L + P FGR +ITL F + S EFL +GF E +
Sbjct: 178 CKNTVIIFTGSMVKLIEKTLKNIEYTEPFFGRYIRKITLGRFLPEQSREFLEKGFEEEGI 237
Query: 215 NVPQEHIEVAVDELDGVPGWLVEYGYHYVHT--RDHREALERTLQNALSLIRSELSELER 272
V + I+ AV LDG+PGWL +G Y + + ++ ++ A++ +R+E
Sbjct: 238 KVDESVIDEAVKRLDGIPGWLTLFGSEYTFSAKMGTKPRIDEIIEKAINEVRNEARNFIF 297
Query: 273 RSE---RYVAILKAI 284
++ RY A++ A+
Sbjct: 298 STQSPLRYSAVILAL 312
>gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 182
Score = 123 bits (307), Expect = 2e-27
Identities = 73/187 (39%), Positives = 108/187 (57%), Gaps = 12/187 (6%)
Query: 167 VGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVAVD 226
+GLLHDFLG +D +PL+GR Y EITLE F ++ S +FLR+GF E++L V + I+ +
Sbjct: 1 MGLLHDFLGVEDPGSPLYGRYYFEITLERFDKEKSRQFLRKGFEELSLKVEENVIQDIIA 60
Query: 227 ELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSELERRS----ERYVAILK 282
+DG+PGWL G Y + RD + + + AL+ I S +S S +RY +L+
Sbjct: 61 MVDGIPGWLTLAGNQYFNNRDLKRVKDLAINVALNEINSLISVKNNVSPIVAKRYRTVLR 120
Query: 283 AISLGINRWSKIKEYVEAKHGS-ITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVV 341
I+ G+N WSKI V+ + GS I+ + S +L L+K+S I YR +DPV
Sbjct: 121 CIAKGMNSWSKILNCVQNEEGSTISTSVLSNILNTLKKLSIIDEN-------YRFLDPVY 173
Query: 342 ERVIRSL 348
+ R L
Sbjct: 174 KEASRML 180
>gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 395
Score = 90.1 bits (220), Expect = 3e-17
Identities = 92/390 (23%), Positives = 174/390 (44%), Gaps = 72/390 (18%)
Query: 12 EDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGIYIDVRKAMKG- 70
++ FDRE E+ +L+ + + ++G+RR GK+S+I SL I+ +Y+ V ++G
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQPVAIIGVRRIGKTSVILKSLKIIETPKVYLSVEDFIEGK 78
Query: 71 --------------------GRVSEERLKLQLLGN-----IRRLRINIPGIKLEPTPLDM 105
V +R Q++ + +LR I +KL +++
Sbjct: 79 SFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFN-INL 137
Query: 106 TDIFDLLNSYGRKRRK--------------------IIVLAFDEAQYFRFYGSRGGEDFL 145
++ LNS R K IV+A DE QY + S+
Sbjct: 138 VEVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKL-ASQNYPGIF 196
Query: 146 LAVAYSYDNHEWIRFLFSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFL 205
+ + H + ++ SGS VGLL F D K P + + + I ++ F ++ S FL
Sbjct: 197 HLLRSKWQFHNKVSYVISGSSVGLLEKI--FYDKKEPFY-QFFFPIYVKQFDKNTSFNFL 253
Query: 206 REGFREVNLNVPQEHIEVAVDELDGVPGWLVEYGYHYVHTRD-HREALERTLQN------ 258
++GFR+ + + +A++ELDG+P WL +G + + E ++ +++
Sbjct: 254 KQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFNDP 313
Query: 259 -ALSLIRSELSELERRSERYVAILKAISLGINRWSKIKEYVEAKHGSITNARFSALLKNL 317
+I+ E ++L + + ILK ++ + K + K ++ A + LK+L
Sbjct: 314 IVRGIIQEEYNKLGKNAR---IILKYLA---EKGGK----GDLKGLELSRASINEGLKSL 363
Query: 318 EKMSWIRAELKDGRKVYRIVDPVVERVIRS 347
+I +K+ R Y I+DPV+ +V++S
Sbjct: 364 LGSGYI---VKEERGKYAIIDPVIVKVLKS 390
>pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus
>gi|1707745|emb|CAA69465.1| (Y08256) orf c01015
[Sulfolobus solfataricus]
Length = 395
Score = 90.1 bits (220), Expect = 3e-17
Identities = 92/390 (23%), Positives = 174/390 (44%), Gaps = 72/390 (18%)
Query: 12 EDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGIYIDVRKAMKG- 70
++ FDRE E+ +L+ + + ++G+RR GK+S+I SL I+ +Y+ V ++G
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQPVAIIGVRRIGKTSVILKSLKIIETPKVYLSVEDFIEGK 78
Query: 71 --------------------GRVSEERLKLQLLGN-----IRRLRINIPGIKLEPTPLDM 105
V +R Q++ + +LR I +KL +++
Sbjct: 79 SFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLRELIGYVKLSFN-INL 137
Query: 106 TDIFDLLNSYGRKRRK--------------------IIVLAFDEAQYFRFYGSRGGEDFL 145
++ LNS R K IV+A DE QY + S+
Sbjct: 138 VEVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKL-ASQNYPGIF 196
Query: 146 LAVAYSYDNHEWIRFLFSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFL 205
+ + H + ++ SGS VGLL F D K P + + + I ++ F ++ S FL
Sbjct: 197 HLLRSKWQFHNKVSYVISGSSVGLLEKI--FYDKKEPFY-QFFFPIYVKQFDKNTSFNFL 253
Query: 206 REGFREVNLNVPQEHIEVAVDELDGVPGWLVEYGYHYVHTRD-HREALERTLQN------ 258
++GFR+ + + +A++ELDG+P WL +G + + E ++ +++
Sbjct: 254 KQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFNDP 313
Query: 259 -ALSLIRSELSELERRSERYVAILKAISLGINRWSKIKEYVEAKHGSITNARFSALLKNL 317
+I+ E ++L + + ILK ++ + K + K ++ A + LK+L
Sbjct: 314 IVRGIIQEEYNKLGKNAR---IILKYLA---EKGGK----GDLKGLELSRASINEGLKSL 363
Query: 318 EKMSWIRAELKDGRKVYRIVDPVVERVIRS 347
+I +K+ R Y I+DPV+ +V++S
Sbjct: 364 LGSGYI---VKEERGKYAIIDPVIVKVLKS 390
>pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (strain Orsay)
>gi|5457727|emb|CAB49218.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 385
Score = 89.7 bits (219), Expect = 4e-17
Identities = 91/365 (24%), Positives = 155/365 (41%), Gaps = 34/365 (9%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
+ FD +P+ E LF REEE+ +L ++ +LG R GK+S+ NE
Sbjct: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKENG 90
Query: 61 Y----IDVRKAMKGGRVSEE---RLKLQLLGNIRRLRINIPGIKLEPTPLDMTDIFDLLN 113
Y +D+R +E+ RL +L +I +I + + +T L
Sbjct: 91 YNVVLVDLRDTETFREATEKILGRLPRSILDSISEYLSSISEVSAKGAGAGLTV---KLK 147
Query: 114 SYGRKRRKI---------IVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSG 164
RR + +L DE Q + +G FL A+ ++ + ++ +F+G
Sbjct: 148 KSAPARRALSDALFKVQDTILILDEVQGIQ----QGVPHFLKALGAVFNENHSLQIIFTG 203
Query: 165 SEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQEHIEVA 224
S G++ S +GR I L P+ ++ +FLR GF ++ + + I
Sbjct: 204 SYSGVVRRLFEATYSDES-YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEIRDT 262
Query: 225 VDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSE-LERRSERYVAILKA 283
+ L +PGWL YG R+H +AL+ ++ A+ +SEL LE RS + +++
Sbjct: 263 IRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPKARKVVRL 322
Query: 284 ISLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIVDPVVER 343
++ G + IK I+ S LL L M + KD +Y DPV +
Sbjct: 323 LAFGASWGDLIKT-------GISEDALSRLLGIL--MDELFILNKDDMGIYYFADPVYRK 373
Query: 344 VIRSL 348
S+
Sbjct: 374 AAMSI 378
>gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 89.3 bits (218), Expect = 6e-17
Identities = 95/382 (24%), Positives = 163/382 (41%), Gaps = 68/382 (17%)
Query: 15 FDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGIYIDVRKAMKGGR-- 72
F RE+E+ L+ L+G RR GK+S++ SL I + ++G +
Sbjct: 13 FGREKEIESLLGLYKLGQPVGLIGPRRIGKTSLLLASLEHSSFPYSLISAEEFVRGEKGF 72
Query: 73 -----------------VSEERLKL-------------QLLGNIRRLRINIPGIK----- 97
S+ K+ LLG ++ + NIP +
Sbjct: 73 DFAEFLSAYITSVTSTIYSKANYKIILEKGKSYLKQLRDLLGQVK-VTFNIPELYSTIEL 131
Query: 98 ----------LEPTPLDMTDIFDLLNS-YGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLL 146
LE D D+ +L+ +G +R +V+A DE QY R +
Sbjct: 132 TLDKAEKKKYLEKEFRDALDLPQILSEKFGLQR---VVIAIDEFQYLRL-AKQSIPGIFH 187
Query: 147 AVAYSYDNHEWIRFLFSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLR 206
+ + H+ + ++ SGS +G++ + L S+ F + + + + PF R SIEFLR
Sbjct: 188 IMRSKWQFHKNVTYVISGSLIGMMMELLS---SRNQPFYQFFYLMKVNPFDRKTSIEFLR 244
Query: 207 EGFREVNLNVPQEHIEVAVDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSE 266
+GF NL+V E IE+ VD++DG P WL G V + + +L ++L+ +
Sbjct: 245 KGFEVNNLDVKSEEIELIVDQVDGFPAWLNLVGIKIVTEKRSANEVINSLVKDINLVTAL 304
Query: 267 LSELERRSERYVAILKAI-SLGINRWSKIKEYVEAKHGSITNARFSALLKNLEKMSWIRA 325
++L+R S A+LK + SLG A + + L+++
Sbjct: 305 ENDLKRLSPTARAVLKNLASLG-----------GAGSPKDLGLDLLTVTRGLKQLMNYGL 353
Query: 326 ELKDGRKVYRIVDPVVERVIRS 347
K+GR +YRIVDP++ + + S
Sbjct: 354 VEKEGRGIYRIVDPILIKYLVS 375
>pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (strain Orsay)
>gi|5458557|emb|CAB50045.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 388
Score = 85.8 bits (209), Expect = 7e-16
Identities = 102/372 (27%), Positives = 167/372 (44%), Gaps = 37/372 (9%)
Query: 3 FDPKPKERKEDLFDREEE--LAELISSITKYPITLLLGIRRTGKSSIIKVSLNE-IDAIG 59
F +P +E L+ + EL+ + K I++LLG RR GK+S++ V + I G
Sbjct: 7 FSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGKFIRKRG 66
Query: 60 ---IYIDVRK-----AMKGGRVSEERLKLQLLGNIRRLRINIPGIKLEPTPL---DMTDI 108
IY + + A+ + +R ++L+ + ++ G+ +E + T
Sbjct: 67 HHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRKTSIEEFTSD 126
Query: 109 FDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSGSEVG 168
F L + K +L FDEAQ + + + SY N I +F+GS G
Sbjct: 127 FSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPN---ISIIFTGSMPG 183
Query: 169 LLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQE-HIEVAVDE 227
+L +L + SK P F R TL + +EFL+ GFR + V E +E AV E
Sbjct: 184 ILIRYLNSEASK-PNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAVKE 242
Query: 228 LDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRS-ELSELERRSER---------Y 277
L G+PG++ YG V+ + A++ L AL RS L E +R E Y
Sbjct: 243 LGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFINVYSSPIY 302
Query: 278 VAILKAISLGINRWSKIKE-YVEAKHGSITNARFSALLK---NLEKMSWIRAELKDGRKV 333
V +L+ ++ + E Y E ++ R + K LEK+ +IR+ DG++
Sbjct: 303 VEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRS---DGKR- 358
Query: 334 YRIVDPVVERVI 345
Y I DP++ V+
Sbjct: 359 YWIEDPLLRIVV 370
>gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 162
Score = 84.7 bits (206), Expect = 2e-15
Identities = 60/168 (35%), Positives = 88/168 (51%), Gaps = 19/168 (11%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEIDAIGI 60
MLFD +PKE +EDLFDRE+E+ E++S+I + P+ L+ G+RR GK+S++KV+LNEI +
Sbjct: 1 MLFDERPKENREDLFDREKEIKEIMSNINR-PLILITGVRRIGKTSVLKVALNEIKIPHV 59
Query: 61 YIDVR------------KAMKGGRVSEERLKLQLLGNIRRLRINIPGIKLEPTPLDMTDI 108
ID R S+ L +L IR + I ++L+ + +
Sbjct: 60 IIDCRNLRPNYSRGDLYSLFSNAFSSKLSTFLDVLSKIRGVSILGNSVELKWKGREYVSL 119
Query: 109 FDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGE-DFLLAVAYSYDNH 155
DL + KR IV+ DEAQ R G E +A AY YD +
Sbjct: 120 SDLFDHLNEKR---IVIGIDEAQKLR--GPLSNEIKEAIAHAYDYDKN 162
>pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii
>gi|3256840|dbj|BAA29523.1| (AP000002) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 83.1 bits (202), Expect = 4e-15
Identities = 95/368 (25%), Positives = 162/368 (43%), Gaps = 33/368 (8%)
Query: 3 FDPKPKERKEDLFDREEELAE-LISSITKYPITLLLGIRRTGKSSIIKVSLNEI----DA 57
F +P ++ L+D+ ++ + L ++ + I +LLG RR GK+S++ V + +
Sbjct: 7 FTTRPIMEEDCLWDKRRKIVDDLFRTVLRGNIAILLGPRRVGKTSVVNVISQKFAKRRNH 66
Query: 58 IGIYIDV-----RKAMKGGRVSEERLKLQLLGNIRRLRINIPGIKLEPTPL---DMTDIF 109
IY + +A+ + +R L+L+ + I++ GI +E + T F
Sbjct: 67 HYIYFNFSRFIGARAISIADIEPKRTSLKLITTSKSYVISLKGISVEVRKTSIEEFTSDF 126
Query: 110 DLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSGSEVGL 169
L + + +L FDEAQ + + + SY N I +F+GS GL
Sbjct: 127 STLVRILSQNSERGLLIFDEAQVLARLKNLDFRGLIQEITDSYPN---ISMIFTGSMPGL 183
Query: 170 LHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQE-HIEVAVDEL 228
L ++L K P F R TL + + +EFL++GF ++V E +E AV EL
Sbjct: 184 LIEYLNPGPDK-PNFMRASETFTLSRWNVEEGLEFLKKGFESYGISVRNELELERAVKEL 242
Query: 229 DGVPGWLVEYGYHYVHTRDHREALERTLQNAL-SLIRSELSELER---------RSERYV 278
G+PG++ YG ++ +E+ L AL R L E ++ S YV
Sbjct: 243 GGIPGFISYYGITVINLVRSGVPVEKALPRALEESKRYALEEWKKDLEAFLNVYNSPIYV 302
Query: 279 AILKAISLGINRWSKIKE-YVEAKHGSITNARFSALLKNLEKMSWIRAELKDGRKVYRIV 337
++K ++ K E Y L LEK+ +IR+E G K Y I
Sbjct: 303 EVMKVLASSYPTALKGAEVYRRMNRAPKRIQHIYKYLDVLEKVGFIRSE---GGK-YWIE 358
Query: 338 DPVVERVI 345
DP++ ++
Sbjct: 359 DPILRELL 366
>gb|AAK41444.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 196
Score = 74.1 bits (179), Expect = 2e-12
Identities = 67/207 (32%), Positives = 99/207 (47%), Gaps = 25/207 (12%)
Query: 1 MLFDPKPKERKEDLFDREEELAELISSITKYPITLLLGIRRTGKSSIIKVSLNEI----D 56
M+FD PKE E+L RE+E+ IS I ++ G R GK+S++KV +NEI
Sbjct: 1 MIFDLHPKETIEELVGREKEVEHCISQILSKNWIIIGGQREIGKTSLMKVVINEIKKREQ 60
Query: 57 AIGIYIDVR--------KAMKGGRVSEERLKLQLLGNIRRLRINIPGIKLE--PTPLDMT 106
GIYI++R + +++E++ + NI L I GI++ +
Sbjct: 61 IAGIYINLRGVRSLNSLLTILVSEINKEKISWRFKVNINFL-ITSAGIEIRGGSKRRVVN 119
Query: 107 DIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSGSE 166
+ +LLNS IV+AFDE Q F + FL + Y + + +FSGS
Sbjct: 120 SLIELLNSSDE-----IVIAFDEVQELSF----ASKQFLDILGNVYATNPKVHMIFSGSY 170
Query: 167 VGLLHDFLGFDDSKAPLFGRIYNEITL 193
VGL+ L S +PL GR EI L
Sbjct: 171 VGLVKALLS-PPSDSPLHGRPPTEIRL 196
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.142 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127099597
Number of Sequences: 2977
Number of extensions: 5247533
Number of successful extensions: 14344
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 14278
Number of HSP's gapped (non-prelim): 24
length of query: 348
length of database: 189,106,746
effective HSP length: 55
effective length of query: 293
effective length of database: 156,189,961
effective search space: 45763658573
effective search space used: 45763658573
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 165 (68.7 bits)