BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1598 (PAB1598) DE:Hypothetical protein
(459 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st... 935 0.0
pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii ... 479 e-134
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ... 411 e-114
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte... 393 e-108
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st... 387 e-106
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ... 375 e-103
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st... 349 5e-95
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st... 340 3e-92
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 331 1e-89
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha... 321 1e-86
pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (st... 310 2e-83
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ... 291 1e-77
pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii ... 278 1e-73
pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii ... 264 2e-69
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st... 257 2e-67
pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (st... 232 6e-60
gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfat... 220 3e-56
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.] 201 2e-50
pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (st... 161 2e-38
pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (st... 157 3e-37
pir||A71133 hypothetical protein PHS026 - Pyrococcus horikoshii ... 142 9e-33
sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir... 90 6e-17
pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii ... 86 7e-16
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 76 8e-13
pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (st... 71 3e-11
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 70 5e-11
>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
>gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 935 bits (2391), Expect = 0.0
Identities = 459/459 (100%), Positives = 459/459 (100%)
Query: 1 MILVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES 60
MILVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES
Sbjct: 1 MILVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES 60
Query: 61 ETVLEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDF 120
ETVLEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDF
Sbjct: 61 ETVLEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDF 120
Query: 121 LSTLQKYWDLYLSDTKIMLILCGSLVSFMEGILSAKSPIYGRRTGAWKVEEMDFFNAWKF 180
LSTLQKYWDLYLSDTKIMLILCGSLVSFMEGILSAKSPIYGRRTGAWKVEEMDFFNAWKF
Sbjct: 121 LSTLQKYWDLYLSDTKIMLILCGSLVSFMEGILSAKSPIYGRRTGAWKVEEMDFFNAWKF 180
Query: 181 HDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRD 240
HDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRD
Sbjct: 181 HDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRD 240
Query: 241 VSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKGRTIYR 300
VSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKGRTIYR
Sbjct: 241 VSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKGRTIYR 300
Query: 301 IRDNLFAFWFRFVYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGRLP 360
IRDNLFAFWFRFVYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGRLP
Sbjct: 301 IRDNLFAFWFRFVYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGRLP 360
Query: 361 FRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIGLE 420
FRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIGLE
Sbjct: 361 FRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIGLE 420
Query: 421 GWEKHYAIVARDVQGKEDLEDNSHIWDLRDFEELKDVLG 459
GWEKHYAIVARDVQGKEDLEDNSHIWDLRDFEELKDVLG
Sbjct: 421 GWEKHYAIVARDVQGKEDLEDNSHIWDLRDFEELKDVLG 459
>pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii
>gi|3257241|dbj|BAA29924.1| (AP000003) 319aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 319
Score = 479 bits (1219), Expect = e-134
Identities = 219/316 (69%), Positives = 264/316 (83%), Gaps = 1/316 (0%)
Query: 138 MLILCGSLVSFMEGILSAKSPIYGRRTGAWKVEEMDFFNAWKFHDVDAETVVHIYSVFGG 197
MLILCGSLVSFMEGILS KSPIYGRRTG WKVEEM FF+ KFH +D ET + IY VFGG
Sbjct: 1 MLILCGSLVSFMEGILSGKSPIYGRRTGTWKVEEMSFFDVLKFHPIDIETAIKIYGVFGG 60
Query: 198 VPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRDVSRYFSILRAIALGYTR 257
VPQY DY+P DFWEN+++L+LSKGAKYYDEPKYLLK+ELRDVSRYFSILRAI+LGY+R
Sbjct: 61 VPQYWVDYDPGKDFWENIKDLVLSKGAKYYDEPKYLLKEELRDVSRYFSILRAISLGYSR 120
Query: 258 FGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKGRTIYRIRDNLFAFWFRFVYPRR 317
FGQIAD ARIE KSL KYL+VL EMGYI EE P++G+G+T+Y+I ++ F FWFRFV+PRR
Sbjct: 121 FGQIADAARIETKSLGKYLNVLEEMGYIREEKPIVGRGKTVYKINEHFFNFWFRFVFPRR 180
Query: 318 SEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGRLPFRFTKIGRWWHRGEEVD 377
SEIEMGFDVVEEIK EFN+YLG FE I+RQFL+ +N +LPFRFTKIGRWW++GEE+D
Sbjct: 181 SEIEMGFDVVEEIKKEFNNYLGPVFEEISRQFLIEMNKRKKLPFRFTKIGRWWYKGEEID 240
Query: 378 IVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIGLEGWEKHYAIVARDVQGKE 437
+VA+NE EKKA+ + V+WKNL+ K+ +IL DL+RK+EL GL W K Y I+A+ + KE
Sbjct: 241 LVALNEDEKKALFIEVKWKNLERKEAYKILKDLKRKAELTGLHDWNKAYGIIAKSIMEKE 300
Query: 438 DLEDNSHI-WDLRDFE 452
+L + + WDLRDFE
Sbjct: 301 ELREEGFLAWDLRDFE 316
>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
>gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 496
Score = 411 bits (1045), Expect = e-114
Identities = 209/466 (44%), Positives = 303/466 (64%), Gaps = 16/466 (3%)
Query: 2 ILVSR--FIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEE 59
+LVS+ FIDR+ EL L +R SG+A+ I+IYGRRR+GKT L+ +FL GG+YLLA E
Sbjct: 32 LLVSKQLFIDRKKELGLLEERLKSGKAQFIVIYGRRRVGKTALILEFLRRHGGLYLLARE 91
Query: 60 SETV--LEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQ 117
+ + LE FS RLAEYFND FLK+NPLR+ AFF YL+ K+ + ++ IDE Y+ K
Sbjct: 92 TSEIENLERFSLRLAEYFNDSFLKKNPLRSLDAFFEYLSTKAEKPFIIAIDEFPYLVKGN 151
Query: 118 KDFLSTLQKYWDLYLSDTKIMLILCGSLVSFMEGILSAKSPIYGRRTGAWKVEEMDFFNA 177
K S LQ+YW++ LS KI LI+ GS VS E +L KSP+YGRRT K++ +DFFNA
Sbjct: 152 KALPSILQEYWEMKLSKKKIFLIVSGSSVSMTERLLGYKSPLYGRRTAQLKLKPLDFFNA 211
Query: 178 WKF-HDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQ 236
+F E V +Y + GG P YL +++ ENL+ Y D ++L++
Sbjct: 212 REFLPKYSLEDFVRVYGILGGTPAYLLEFSDEKSLEENLKSYFRVDSLLYGDA-LFILRE 270
Query: 237 ELRDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIG--- 293
EL + YF+I+ AIA G T G+I ++ +E ++ KYL VL ++ + E P+
Sbjct: 271 ELDEPRNYFAIMEAIARGNTTLGEIVNETGLERATVGKYLSVLIDLDLVRREVPITASRK 330
Query: 294 --KGRTIYRIRDNLFAFWFRFVYPRRSEIEMGFD--VVEEIKGEFNDYLGKAFEGIARQF 349
KGR Y I DN FAFWFR+VYP IE G +V+ + + + Y G+ FEG+A++F
Sbjct: 331 SRKGR--YYIADNYFAFWFRYVYPNADLIESGNGELLVDTVMDDIDHYTGEVFEGVAKEF 388
Query: 350 LVRLNTLGRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGD 409
L+RLN RLPFRF+++GRWW++ EE+D+VA+NE EKK + + V+WK+L ++ R IL D
Sbjct: 389 LLRLNKSERLPFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGILKD 448
Query: 410 LRRKSELIGLEGWEKHYAIVARDVQGKEDLEDNSHI-WDLRDFEEL 454
L+RK++L+GL+ W KHY +VA+ V+GK+++++ + WDL D +
Sbjct: 449 LKRKAKLVGLDEWGKHYGLVAKSVRGKDEIKEEGWLAWDLEDIHRM 494
>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 458
Score = 393 bits (998), Expect = e-108
Identities = 203/457 (44%), Positives = 297/457 (64%), Gaps = 12/457 (2%)
Query: 7 FIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESETV--L 64
F+DRE EL+FL +R+ G E I+IYGRRR+GKT LL +F++ GGIYLLA E+ + L
Sbjct: 2 FLDRERELQFLERRYEMGGPEFIVIYGRRRVGKTALLLEFISRHGGIYLLARETSNLENL 61
Query: 65 EDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDFLSTL 124
+ FS+RL+EYF D FLK NP +NW AF YL K++ERLVVVIDE Y+ K + S L
Sbjct: 62 KRFSDRLSEYFGDDFLKRNPFQNWDAFLEYLNQKATERLVVVIDEFPYLVKGDRSLPSIL 121
Query: 125 QKYWDLYLSDTKIMLILCGSLVSFMEGILSAKSPIYGRRTGAWKVEEMDFFNAWKF-HDV 183
Q+YWDL LS+ +I LI+CGS +S ME +L KSPIYGRRTG ++ +DF +A +F
Sbjct: 122 QEYWDLKLSNGRIFLIICGSSISMMEKLLGYKSPIYGRRTGQINLKPVDFLHAREFLPGY 181
Query: 184 DAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRDVSR 243
E + Y + GG P +L +++ + ENL E L S Y D ++L++EL +
Sbjct: 182 SLEDFIKAYGILGGSPAHLLEFDDSKTIKENLLEYLRSDSLLYQD-AFFVLREELEEPRN 240
Query: 244 YFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIG---KGRTIYR 300
YF+I+ A+A G T G+I ++ + ++AKYL VL E+ +++ E P+ R Y
Sbjct: 241 YFAIMEAVAAGKTSLGEIMNETGLSRATVAKYLSVLIELDFVKREIPITASRKSRRGRYY 300
Query: 301 IRDNLFAFWFRFVYPRRS--EIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGR 358
I+DN FAFWFR+++P E E +++E I + +YLG FE +A +FL ++ +
Sbjct: 301 IKDNYFAFWFRYIHPNIDFIESERRKELLELIIDDLPNYLGGIFENVAIEFLPLIS--NK 358
Query: 359 LPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIG 418
LPF+ KIGRWWH+ EE+D+VA NE E+KA+L+ V+WK L+ + +IL DL RKS+++
Sbjct: 359 LPFKPLKIGRWWHKNEEIDLVAFNEKEEKAILIEVKWKTLNKIEANKILKDLNRKSKILK 418
Query: 419 LEGWEKHYAIVARDVQGKEDLEDNSHIWDLRDFEELK 455
++ WE+++ I+A+ V+ KE ++ IWDL D E LK
Sbjct: 419 MKEWEQYHGIIAKRVKDKEKIK-GGLIWDLEDIENLK 454
>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
>gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 469
Score = 387 bits (984), Expect = e-106
Identities = 204/459 (44%), Positives = 284/459 (61%), Gaps = 14/459 (3%)
Query: 7 FIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESETV--L 64
FI RE+EL L++R SG+AE I+IYGRRRIGKT L+ + + + GGIYLLA E+ L
Sbjct: 2 FISREEELNLLKERVESGKAEFIVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNL 61
Query: 65 EDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDFLSTL 124
+ FSER+A+YF+ L++NP +NW AFF YL KS ER++V IDE Y+ K K S L
Sbjct: 62 KRFSERVAKYFDGDLLRKNPFQNWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASIL 121
Query: 125 QKYWDLYLSDTKIMLILCGSLVSFMEGILSAKSPIYGRRTGAWKVEEMDFFNAWKF-HDV 183
Q+YWDL LS +KI LI+CGS ++ ME +L KSPIYGRRT K++ MDFF+A KF
Sbjct: 122 QEYWDLKLSKSKIFLIICGSSITMMEKLLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRY 181
Query: 184 DAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRDVSR 243
E + Y + GG P YL ++ ENL Y D ++L++EL +
Sbjct: 182 PIEDSLRAYGILGGTPAYLLKFDDKKSIEENLLSYFRPDSFLYQD-ALFILREELNEPRN 240
Query: 244 YFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVI-----GKGRTI 298
YF+I+ AIA G T G+I ++ ++ ++ KYL VL ++ + E P+ KGR
Sbjct: 241 YFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLIDLDLVRREVPITESWKSRKGR-- 298
Query: 299 YRIRDNLFAFWFRFVYPRRSEIEMGFD--VVEEIKGEFNDYLGKAFEGIARQFLVRLNTL 356
Y I D FAFWFR+V P IE G +V+ + +F+ YL FE + RQFLVRLN
Sbjct: 299 YYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQYLDGVFEDVTRQFLVRLNKE 358
Query: 357 GRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSEL 416
L F KIGRWWH+GEE+D+VA+NE +K + V V WK L + R+ + L +K++L
Sbjct: 359 SLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWKELSENETRKTIRKLMKKAQL 418
Query: 417 IGLEGWEKHYAIVARDVQGKEDLEDNSH-IWDLRDFEEL 454
+GLE W+++Y +V + ++GKE L +WDL+DFE L
Sbjct: 419 VGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDFELL 457
>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
>gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 471
Score = 375 bits (953), Expect = e-103
Identities = 196/470 (41%), Positives = 295/470 (62%), Gaps = 20/470 (4%)
Query: 1 MILVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES 60
++ + +F+DRE EL FL +R++SG AEL+IIYGRRRIGKT LL F +Y LA E
Sbjct: 5 LMSIQKFVDRERELAFLEERYASGNAELLIIYGRRRIGKTELLLHFARNKEHVYFLASEK 64
Query: 61 --ETVLEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGK-SSERLVVVIDEVQYIAKSQ 117
L + + ++ D + + + R+V++IDE Y+ +
Sbjct: 65 PYRDNLRELQRMMGDFLGDRLFSRVEFSDIDELLIEFSKRVQGRRVVLIIDEFPYLIEHY 124
Query: 118 KDFLSTLQKYWDLYLSDTKIMLILCGSLVSFMEG-ILSAKSPIYGRRTGAWKVEEMDFFN 176
K LS +Q+ WD+ LS + +MLILCGS VS ME +L KSP+YGRRTG WKV E+ F++
Sbjct: 125 KPVLSLIQRAWDMELSKSDLMLILCGSSVSSMETEVLGYKSPLYGRRTGQWKVGELPFWS 184
Query: 177 AWKFH-DVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLK 235
+F E +V +Y V GG+P YL +NP +F EN+ E +LSKGA Y+E + LLK
Sbjct: 185 LREFFPSYSTEELVKVYGVLGGIPAYLLQFNPEKNFDENVVEKVLSKGAFLYEEAEILLK 244
Query: 236 QELRDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPV---- 291
+E+R+ + YF IL+AIA G +RFG+I + ++ ++KYL+VL ++G +E E PV
Sbjct: 245 EEMREPANYFIILQAIASGRSRFGEIVNATGLDKSLVSKYLNVLEKLGMVEREVPVTASR 304
Query: 292 ---IGKGRTIYRIRDNLFAFWFRFVYPRRSEIE--MGFDVVEEIKGEFNDYLGKAFEGIA 346
+ +GR Y I DN AFWFR+V P +S +E +G ++ E K +F +Y+G FE +
Sbjct: 305 KEALKRGR--YSITDNYLAFWFRYVLPNKSYLEAGLGKEIWERSKEDFKEYMGGVFERLL 362
Query: 347 RQFLVRLNTLGRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRI 406
R+ V FRF+++GRWW++ EE+D+VA+NE EKK + + V+WK+L ++ R I
Sbjct: 363 RKPEVFTKL---TDFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKDLSKREARGI 419
Query: 407 LGDLRRKSELIGLEGWEKHYAIVARDVQGKEDLEDNSH-IWDLRDFEELK 455
L DL RK++L+ L+ WEK+Y +V + ++GKE L + S+ +WDL+DFE+ K
Sbjct: 420 LKDLERKAKLVELDNWEKYYGLVTKSLEGKEKLREESYLVWDLKDFEDPK 469
>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
>gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 349 bits (885), Expect = 5e-95
Identities = 191/456 (41%), Positives = 277/456 (59%), Gaps = 11/456 (2%)
Query: 3 LVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFL-AEVGGIYLLAEES- 60
++S+F+DREDEL+ L +W+S L+IIYGRRR GKT LL +F + Y E++
Sbjct: 1 MISKFVDREDELKALEDQWNS-TPSLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTR 59
Query: 61 ETVLEDFSERLAEYFNDP-FLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKD 119
E + E LAE+FND FL N +W F YLA K +E+ ++++DE Y KS +
Sbjct: 60 ERQIRRLREELAEHFNDELFLSFN---DWYPLFKYLASKVTEKTLIILDEFSYAIKSDRT 116
Query: 120 FLSTLQKYWDLYLSDTKIMLILCGSLVSFM-EGILSAKSPIYGRRTGAWKVEEMDFFNAW 178
+S LQ+ WD S +ML+L GSL+ M + +LS SP+YGRRT ++ ++ + FN+
Sbjct: 117 IVSALQRAWDHDFSKKPVMLVLSGSLIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSL 176
Query: 179 KFHDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQEL 238
KF D E + +Y + GG+P YL + D + E L +YDEP LL EL
Sbjct: 177 KFFD-SFEVGLEMYMLVGGIPAYLIIASRYEDTRRFIEETFLRTEGFFYDEPYILLSGEL 235
Query: 239 RDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKG-RT 297
R++ YFSIL A A G TR +IA A +E + + YL L +G+IE E P+ R
Sbjct: 236 RELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGFIEREIPIARNDKRG 295
Query: 298 IYRIRDNLFAFWFRFVYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLG 357
IY+++D + WF V R+ IE+G +++K + G FE +AR+FLV LN G
Sbjct: 296 IYKLKDPMLLTWFSIVPKNRTGIELGIISYDDVKEDIQRIYGIRFEDVAREFLVELNRRG 355
Query: 358 RLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELI 417
RLPFRFT+IGRWW++GEE+DIVA+NE K+ +L V+WK L ++ + IL DL+RK +L+
Sbjct: 356 RLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKREAKGILKDLKRKFKLM 415
Query: 418 GLEGWEKHYAIVARDVQGKEDL-EDNSHIWDLRDFE 452
LEGW+ +A+VA++V GK L E ++WDL D +
Sbjct: 416 NLEGWDASFALVAKNVHGKSKLREYGFNVWDLEDLK 451
>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
>gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 462
Score = 340 bits (862), Expect = 3e-92
Identities = 183/462 (39%), Positives = 278/462 (59%), Gaps = 17/462 (3%)
Query: 1 MILVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES 60
+I++ +F++R+ EL+ L + W G L ++YGRRR+GKT LL+KFL GIY L +
Sbjct: 4 IIMIRKFVNRKRELKVLERAWEEG-FRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQR 62
Query: 61 --ETVLEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQK 118
E L+ FS+ ++ + P E+ + F +L G+ +L+V+ DE Y+ ++ K
Sbjct: 63 GYEKDLKRFSQEISSFIGAPVRFES----FKDAFKFLRGQG--KLLVIFDEFPYLIEADK 116
Query: 119 DFLSTLQKYWDLYLSDTKIMLILCGSLVSFMEG-ILSAKSPIYGRRTGAWKVEEMDFFNA 177
+S Q+ D+ L ++I +ILCGS V ME ILS KSP+YGR +G KV+ FF+
Sbjct: 117 GVISEFQEIVDIVLEGSEITIILCGSSVGMMEREILSYKSPLYGRASGVLKVKPFRFFDM 176
Query: 178 WKFHDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQE 237
++ D E ++ +Y V G+P+Y+ + D + + + A ++E + LL +E
Sbjct: 177 VEWFGKDFERLLRLYGVTWGIPKYMEFFKTGSD--DEIINNFFNPSAFLFNEARLLLMEE 234
Query: 238 LRDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKG-- 295
LR+ +RY I+ AIA+G TR +IA IEAK L+ YL VLS +G + E P+ +
Sbjct: 235 LRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSNLGIVRREVPITERKAK 294
Query: 296 RTIYRIRDNLFAFWFRFVYPRRSEIEM--GFDVVEEIKGEFNDYLGKAFEGIARQFLVRL 353
R IY I D F F+ RFV P EI+ + + FN YLGK FE +AR+FL+ +
Sbjct: 295 RGIYVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTYLGKTFEKVAREFLIEV 354
Query: 354 NTLGRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRK 413
N G LPF+F +IG+WW R EE+D++A+N EKK +LV V+WK L K+ R +L DL RK
Sbjct: 355 NKHGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKELGEKEARGVLKDLERK 414
Query: 414 SELIGLEGWEKHYAIVARDVQGKEDLEDNSH-IWDLRDFEEL 454
EL+GLE W+K+Y ++A+ ++ KE L+ +WDL+DFE L
Sbjct: 415 GELVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDFENL 456
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 331 bits (840), Expect = 1e-89
Identities = 186/462 (40%), Positives = 279/462 (60%), Gaps = 24/462 (5%)
Query: 1 MILVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES 60
+I++ +F++R+ ELE L K + G A L++IYGRRR+GKT LL+KFL E GIY L
Sbjct: 4 IIMIRKFVNRKRELETLEKLYEKG-ANLVVIYGRRRVGKTALLRKFLEEKRGIYFLCSRR 62
Query: 61 --ETVLEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQK 118
E L+ FS+ L+++F P E+ + F +L+ + +LVVVIDE Y+ +S K
Sbjct: 63 GYEKDLKRFSQELSKFFGIPLSFED----FEDAFEFLSKQG--KLVVVIDEFPYLIESYK 116
Query: 119 DFLSTLQKYWDLYLSDTKIMLILCGSLVSFME-GILSAKSPIYGRRTGAWKVEEMDFFNA 177
+S Q+ DL L +++MLILCGS + ME +L K+P+YGR G KV+ FF+
Sbjct: 117 PVVSVFQRIVDLVLEGSEVMLILCGSSIGMMEKDVLGYKAPLYGRAQGIMKVKPFRFFDM 176
Query: 178 WKFHDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQE 237
+++ D E +V +Y V GVP+Y+ + D E + + ++E K LL +E
Sbjct: 177 VEWYGRDFEKLVRLYGVTWGVPRYMEFFREGSD--EEIIRNFFDPSSFLFNEAKLLLMEE 234
Query: 238 LRDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKG-- 295
LR+ + Y I+ AIALG TR +IA+ + I+AK L YL L E+G ++ TP+ +
Sbjct: 235 LRNPAVYGEIIEAIALGNTRLSEIANYSMIDAKDLPAYLKTLQELGIVKRITPITKRNAK 294
Query: 296 RTIYRIRDNLFAFWFRFVYPRRSEIEM--GFDVVEEIKGEFNDYLGKAFEGIARQFLVRL 353
R +Y I D F F++RFV P EIE +E+ + FN YLG+ FE ++++FL+ +
Sbjct: 295 RGVYVIEDEYFRFYYRFVNPYYEEIESLNPEPAIEDFRKNFNSYLGETFEKVSKEFLLAI 354
Query: 354 NTLGRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRK 413
+ KIG+WW++GEE+D+VA+NE EKKA+ V V+W+ L ++ +RIL L +K
Sbjct: 355 GD-------YPKIGKWWYKGEEIDLVALNEREKKALFVEVKWRGLKEREAKRILKRLEKK 407
Query: 414 SELIGLEGWEKHYAIVARDVQGKEDLEDNSH-IWDLRDFEEL 454
S LI L+GW K Y ++AR V+GKE L D +WDL DF L
Sbjct: 408 SMLINLDGWIKDYGVIARRVEGKESLRDEGWLVWDLEDFNSL 449
>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
hypothetical protein MJECL04 - Methanococcus jannaschii
plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
jannaschii predicted coding region MJECL04
[Methanococcus jannaschii]
Length = 439
Score = 321 bits (813), Expect = 1e-86
Identities = 181/452 (40%), Positives = 273/452 (60%), Gaps = 22/452 (4%)
Query: 7 FIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESETVLED 66
F+DRE+EL+ L ++ S E I+IYGRRRIGKT L K + IY LA E + L+
Sbjct: 2 FVDREEELKALNEKLDSNNFEFIVIYGRRRIGKTKLALKSVENREHIYYLAVEGDN-LKH 60
Query: 67 FSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDFLSTLQK 126
F ++ +P + E +W A+F +L K +++IDE + K + LS Q+
Sbjct: 61 FKRYASKV--EPTI-EYAKEDWEAYFNFLKDK-----IIIIDEFPNLIKENPNVLSLFQR 112
Query: 127 YWDLYLSDTKIMLILCGSLVSFM-EGILSAKSPIYGRRTGAWKVEEMDFFNAWKFHDVDA 185
D++L +TK LI+ GS +S M E +LS KSP+YGR+TG K++ + F + +F
Sbjct: 113 IVDIHLKNTKTKLIILGSSISMMGEKVLSYKSPLYGRKTGVLKIKPLKFKHLKEFFPKAI 172
Query: 186 -ETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRDVSRY 244
E +V IY G+P YL L FW+ L + + + E +L+K E + + Y
Sbjct: 173 WEELVEIYGFADGIPYYLEKVK--LPFWDYLDKEIKRVDSFLRYEVDFLMKYEFEEPTTY 230
Query: 245 FSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIG-----KGRTIY 299
IL AIA G G+I + + L YL L E+ +IE +TP+ KGR Y
Sbjct: 231 KKILEAIAFGNHTLGEIKNYLGFKHSDLTPYLKNLIEVEFIERQTPITESVKSKKGR--Y 288
Query: 300 RIRDNLFAFWFRFVYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGRL 359
I+DN AF+FR+++P S IE G +EEIK ++N YLG FE +A++FL+ LN + +L
Sbjct: 289 YIKDNFIAFYFRYIFPNLSAIEEGIFDIEEIKADYNQYLGFVFEKVAKEFLIELNKMNKL 348
Query: 360 PFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIGL 419
PF+F KIGRWWHRGEE+D++A+N+++KKA+ V V+WK+L +DV++I DL RKS+L+GL
Sbjct: 349 PFKFLKIGRWWHRGEEIDLIALNDNDKKALFVEVKWKDLKDRDVKKIYRDLYRKSKLVGL 408
Query: 420 EGWEKHYAIVARDVQGKEDLEDNSHIWDLRDF 451
+ +EK+YAIV + ++ KE+ + ++DL DF
Sbjct: 409 DDYEKYYAIVGKKIESKEN--GDCLLFDLEDF 438
>pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (strain Orsay)
>gi|5458278|emb|CAB49767.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 451
Score = 310 bits (786), Expect = 2e-83
Identities = 179/450 (39%), Positives = 262/450 (57%), Gaps = 25/450 (5%)
Query: 9 DREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESETVLEDFS 68
+ E EL+ +R+ +S + ELI+IYGRRR+GKT L+ + + +Y LA ES+ L F
Sbjct: 4 ETEKELKAIREGLTSEKFELIVIYGRRRVGKTRLILEAVKGFPHVYYLAVESDN-LRHFR 62
Query: 69 ERLAEYFND-PFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDFLSTLQKY 127
E F + +++E+ W + L GK +++IDE + K +S Q+
Sbjct: 63 ETAERVFPEVKYVRED----WESILHALKGK-----IIIIDEFPNLIKEDPKVVSLFQRA 113
Query: 128 WDLYLSDTKIMLILCGSLVSFM-EGILSAKSPIYGRRTGAWKVEEMDFFNAWKFH-DVDA 185
DL LS++ +IL GS VS + E +LS KSP+YGRRTG+ K++ ++FF +F +
Sbjct: 114 IDLELSNSNTKIILLGSSVSIITEKVLSQKSPLYGRRTGSMKLKPLEFFALKEFFPEASW 173
Query: 186 ETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRDVSRYF 245
E +V IY G+P Y+ L FWE L + LLS + + DE +LLK E + Y
Sbjct: 174 EELVEIYGFTDGIPYYIIQVK--LPFWEWLEKELLSPLSFFKDEVDFLLKYEFTETRVYR 231
Query: 246 SILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKG---RTIYRIR 302
IL AIALG T +I D + + YL L E + E P+ K R Y +
Sbjct: 232 RILEAIALGKTTIKEIKDFTGMRHSDITPYLRNLLETDLVVREVPITEKPYSKRGRYYLA 291
Query: 303 DNLFAFWFRFVYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGRLPFR 362
DN AFWFR++YP S IE G +EEI+G+++ YLG FE +ARQFL++LN
Sbjct: 292 DNFLAFWFRYIYPNLSRIEEGTFSIEEIRGDYSQYLGWVFEKVARQFLLKLN------IN 345
Query: 363 FTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIGLEGW 422
FTKIGRWWH+ +E+DIVA+NE K + V+WK L K+ +IL +L +K +L GL+ W
Sbjct: 346 FTKIGRWWHKDKEIDIVALNERGKGVLFAEVKWKKLKEKEAEKILRELEKKGKLTGLDDW 405
Query: 423 EKHYAIVARDVQGKEDLEDNSH-IWDLRDF 451
EK Y ++AR+++GKE+L+ + +WDLRDF
Sbjct: 406 EKSYGLIARNIEGKENLKGKGYLVWDLRDF 435
>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
>gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 456
Score = 291 bits (737), Expect = 1e-77
Identities = 170/453 (37%), Positives = 267/453 (58%), Gaps = 28/453 (6%)
Query: 6 RFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES--ETV 63
+FIDRE E+E L + W + R +++YGRRR+GKT LL++F + + E+ E
Sbjct: 2 KFIDRELEMEILEREWEN-RPSFVVLYGRRRVGKTRLLKEFSKDKRTFFFTFPEAIKEVQ 60
Query: 64 LEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDFLST 123
+++F + +AE+ D F ++ R+W YLA K + L+V +DE Y KS++ LS
Sbjct: 61 MKEFKKTMAEFLGDDFARKLETRDWLDLLRYLAEKVDDCLIV-LDEFTYAIKSERKILSD 119
Query: 124 LQKYWDLYLSDTKIMLILCGSLVSFM-EGILSAKSPIYGRRTGAWKVEEMDFFNAWKFHD 182
LQ+ WD LS+ K+ML++ GSL+ M + +LS SP+YGRRT + ++ D+ NA KF
Sbjct: 120 LQRTWDDILSEKKVMLVISGSLLGMMWDDVLSYASPLYGRRTRSMNLKPFDYPNALKFFS 179
Query: 183 VDAETVVHIYSVFGGVPQYL---ADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELR 239
D E + +Y + GG+P YL YN +F +RE LS +YDEP LL +ELR
Sbjct: 180 -DPEFGIRVYMLVGGIPSYLKLAGRYNTVEEF---IREEFLSDYGFFYDEPYVLLGEELR 235
Query: 240 DVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKGR-TI 298
++ YFSILRAIA G R +IA+ + +S+ Y+ L +G +E E+P++G + ++
Sbjct: 236 ELKTYFSILRAIAEGNRRLERIANFIGLPMRSVYPYVDTLVRLGLVERESPILGSRKVSL 295
Query: 299 YRIRDNLFAFWFRFVYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGR 358
YRI+D + WF YP+ +EI G ++ + ++ FE +A++FL TL R
Sbjct: 296 YRIKDPMLLTWFTLTYPQMAEISSGTAKLDSLYKVYS----IRFEELAKEFL----TLFR 347
Query: 359 LPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIG 418
P F +GRWW+RGEE+DIVA+ + K L+ V+WK+L + R+L +L KSE +
Sbjct: 348 -PIEFETLGRWWYRGEEIDIVALRKD--KTTLIEVKWKDLSKRSALRVLRELEEKSEKLH 404
Query: 419 LEGWEKHYAIVARDVQGKEDLEDNSH-IWDLRD 450
++ ++A+ V+GKE L + + +WDL D
Sbjct: 405 P---IENIGLIAKSVRGKEKLREEGYLVWDLED 434
>pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii
>gi|3257682|dbj|BAA30365.1| (AP000005) 320aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 320
Score = 278 bits (703), Expect = 1e-73
Identities = 148/312 (47%), Positives = 196/312 (62%), Gaps = 11/312 (3%)
Query: 150 EGILSAKSPIYGRRTGAWKVEEMDFFNAWKFH-DVDAETVVHIYSVFGGVPQYLADYNPN 208
E +LS KSP+YGRRTG+ K+ M+FF +F E +V IY + G+P Y+ P
Sbjct: 4 EKVLSYKSPLYGRRTGSLKLRPMNFFTLREFFPSCSWEELVEIYGMTDGIPFYIIQVKP- 62
Query: 209 LDFWENLRELLLSKGAKYYDEPKYLLKQELRDVSRYFSILRAIALGYTRFGQIADKARIE 268
FWE L E L + + + DE +LL+ E +V+ Y IL AIALG T +I D +
Sbjct: 63 -PFWELLEEELKNPISFFKDEVDFLLRYEFSEVTTYKRILEAIALGKTTLKEIKDFTGLR 121
Query: 269 AKSLAKYLHVLSEMGYIEEETPVIGK-----GRTIYRIRDNLFAFWFRFVYPRRSEIEMG 323
+ YL L E I E P+ K GR Y + DN AFWFRF+YP S IE G
Sbjct: 122 NSDITPYLRNLIEADLIVREVPITEKKTSKKGR--YYVLDNFLAFWFRFIYPNLSRIEEG 179
Query: 324 FDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGRLPFRFTKIGRWWHRGEEVDIVAINE 383
V+EIKGE+ YLG FE IARQFL+ LN + +LPF+F KIGRWW++ EE+DIVA+NE
Sbjct: 180 IFNVDEIKGEYPRYLGWVFEKIARQFLIELNKINKLPFKFEKIGRWWYKEEEIDIVALNE 239
Query: 384 SEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIGLEGWEKHYAIVARDVQGKEDL-EDN 442
EKK +LV V+WK L ++ R IL L +KS+L+GLEGWEK+Y ++AR+++ KE L ED
Sbjct: 240 REKKGLLVEVKWKTLKEREAREILEVLNKKSKLLGLEGWEKYYGLIAREIKRKEPLIEDG 299
Query: 443 SHIWDLRDFEEL 454
+WDL DFEE+
Sbjct: 300 YLVWDLEDFEEI 311
>pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii
>gi|3257252|dbj|BAA29935.1| (AP000003) 323aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 323
Score = 264 bits (667), Expect = 2e-69
Identities = 134/324 (41%), Positives = 208/324 (63%), Gaps = 11/324 (3%)
Query: 138 MLILCGSLVSFME-GILSAKSPIYGRRTGAWKVEEMDFFNAWKFHDVDAETVVHIYSVFG 196
ML+L GSL+ ME +LS SP+YGRRT +++ + F + +F E + Y + G
Sbjct: 1 MLVLSGSLMGIMEDNVLSHSSPLYGRRTAGFRLRSLGLFPSLRFFKSPIEGL-KFYMLLG 59
Query: 197 GVPQYL---ADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQELRDVSRYFSILRAIAL 253
G+P YL + Y +F E RE L +G +YDEP Y++ EL+++ YFSIL A++
Sbjct: 60 GIPAYLIIASRYETVGEFVE--REFLTPEGY-FYDEP-YIVLSELKELKTYFSILSAMSS 115
Query: 254 GYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKG-RTIYRIRDNLFAFWFRF 312
G R +IA + +E + + YL L +G++E E P+ K R +YRI D + WF
Sbjct: 116 GRRRPSEIASEVGLEGRKIYPYLETLIRLGFVERELPIARKEKRGLYRISDPMLMSWFSL 175
Query: 313 VYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGRLPFRFTKIGRWWHR 372
+YP R+EIE+G +E ++ FE ++R+FLV +N G+LPFRFTKIGRWW++
Sbjct: 176 IYPNRTEIELGTITLERVEKILQRIFSFRFEDVSREFLVEMNKAGKLPFRFTKIGRWWYK 235
Query: 373 GEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIGLEGWEKHYAIVARD 432
GEE+D+VA+NE E+KA+ + V+WK+L ++V+ IL DL +K+ L+GL+GW+K+Y ++ +
Sbjct: 236 GEEIDLVALNEDEEKALFIEVKWKDLKEREVKGILKDLEKKAGLVGLDGWDKNYGLIEKS 295
Query: 433 VQGKEDL-EDNSHIWDLRDFEELK 455
++ KE L E+N +WDL+DF+ LK
Sbjct: 296 IERKEKLREENYLVWDLKDFDALK 319
>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
>gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 472
Score = 257 bits (650), Expect = 2e-67
Identities = 168/464 (36%), Positives = 260/464 (55%), Gaps = 30/464 (6%)
Query: 7 FIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESE--TVL 64
F DRE EL+ L + +S + +++YGRRR+GKT L+++FL GIYL E + +L
Sbjct: 10 FYDRERELKKLNEIYSRQGSSFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLL 69
Query: 65 EDFS---ERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSE-RLVVVIDEVQYIAKSQKDF 120
EDF+ E + P+++ + F +L S + +LV+++DE Q +
Sbjct: 70 EDFTREVEMALSSYLPPYVRLR-FSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSL 128
Query: 121 LSTLQKYWDLYLSDTKIMLILCGSLVSFMEGI-LSAKSPIYGRRTGAWKVEEMDFFNAWK 179
S+LQK WDL D+ ++LI GS V M+ I + K P++GR K++ DF+ A+
Sbjct: 129 FSSLQKLWDLKGEDSNVVLIAVGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN 188
Query: 180 FHDVDAETVVHIYSVFGGVPQYLA----DYNPNLDFWENLRELLLSKGAKYYDEPKYLLK 235
F ++ A V I+S GG+P+YL YN N E LR L + + +E +LK
Sbjct: 189 FVNIPARDFVEIFSALGGMPKYLLYLRHYYNGNT--IETLRSLFFDELSPLREEGFNVLK 246
Query: 236 QEL-RDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVL-SEMGYIEEETPVIG 293
E R YFSIL A++LGY +I+DK ++ ++ KYL L + Y+ +E P
Sbjct: 247 LEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTVGKYLSELTNHYEYLGKEVPATE 306
Query: 294 KGR----TIYRIRDNLFAFWFRFVYPRRSEIEMG--FDVVEEIKGEFNDYLGKAFEGIAR 347
R Y IRD F FWFRFVY +E G V+ +++ F ++GK +E I R
Sbjct: 307 DPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITKVLNDLRENFPAFVGKEYERIGR 366
Query: 348 QFLVRLNTLGRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRIL 407
+F+ R++ LG P R +GRWWH+GEE+D++A N E+K L V+W +L +R+L
Sbjct: 367 EFIRRID-LGFSPLR---VGRWWHKGEEIDVIAYN--EEKVALFEVKWSDLSKARAKRLL 420
Query: 408 GDLRRKSELIGLEGWEKHYAIVARDVQGKEDLEDNSH-IWDLRD 450
DL RK EL+ L G E+ Y +++R+V+GKE+L + + ++DL D
Sbjct: 421 RDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYLVFDLND 463
>pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (strain Orsay)
>gi|5458553|emb|CAB50041.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 243
Score = 232 bits (586), Expect = 6e-60
Identities = 115/231 (49%), Positives = 155/231 (66%), Gaps = 4/231 (1%)
Query: 227 YDEPKYLLKQELRDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIE 286
+ E K LL++E R+ Y+++L A+A TR +IA A +E K+ A+YL +L ++ ++
Sbjct: 8 FREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDLDILK 67
Query: 287 EETPVIGKGRT-IYRIRDNLFAFWFRFVYPRRSEIEMGFD--VVEEIKGEFNDYLGKAFE 343
E P+ K + IYR RD FAFWFRFV P EIE GF +E+ F+ YLG AFE
Sbjct: 68 RELPIGKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQYLGGAFE 127
Query: 344 GIARQFLVRLNTLGRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDV 403
I RQFL+ L +G+LPF FTKIGRWWH+GEE+DIVA+NE EKK +LV V+WK L ++
Sbjct: 128 EIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKELRDREA 187
Query: 404 RRILGDLRRKSELIGLEGWEKHYAIVARDVQGKEDLE-DNSHIWDLRDFEE 453
R IL DL RK++ + L GWEK Y +VA+ V+GK DL+ + IWDL DF E
Sbjct: 188 RDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDFGE 238
>gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 420
Score = 220 bits (555), Expect = 3e-56
Identities = 158/455 (34%), Positives = 231/455 (50%), Gaps = 42/455 (9%)
Query: 2 ILVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESE 61
++ ++RE EL+ L+KR SS ELIIIYGRRRIGKT+L+ + IY LA E
Sbjct: 1 MIFMNMVNRERELQALKKRLSSNDLELIIIYGRRRIGKTFLIINAVNGYDFIYYLATEKN 60
Query: 62 TVLEDFSERLAEYFND-PFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKDF 120
L F E + D ++KE+ W A F YL K +++IDE Y+ K +
Sbjct: 61 N-LRKFKELTESKYEDIKYVKED----WEAIFHYLRDK-----IIIIDEFPYMIKEDESI 110
Query: 121 LSTLQKYWDLYLSDTKIMLILCGSLVSFMEGILSAKSPIYGRRTGAWKVEEMDF--FNAW 178
LST QK D L +K LIL GS +S ME +S KSP+YGRRT + +++E+ F +
Sbjct: 111 LSTFQKIVDETLKGSKTKLILLGSSISMMEDAISYKSPLYGRRTASIELKELKFKDLKGF 170
Query: 179 KFHDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQEL 238
F +DA +H+Y GGVP YL W N L + DE ++L+ E
Sbjct: 171 NFSLIDA---IHVYGFAGGVPFYLTKAKTPFLKWINAE--LKEVDSFIKDEIDFMLRYEF 225
Query: 239 RDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVIGKGRTI 298
++ Y IL AI+ G G+I D RI ++ YL+ L ++G I +E P K
Sbjct: 226 SEIGTYKEILHAISSGKNTLGEIKDFVRISG-DVSSYLNKLEKIGIIGKEFPYKMKKGAR 284
Query: 299 YRIRDNLFAFWFRFVYPRRSEIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGR 358
Y I+DN FWF F+YP S IE G ++E E+N YLG+ FE IAR+++ + +
Sbjct: 285 YYIKDNFTLFWFTFIYPNLSLIEEGIYEIKE--DEYNVYLGRIFEKIAREYVEDVYKV-- 340
Query: 359 LPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIG 418
K+ R W + E+DI + E K +G + ++L +L+RK E +G
Sbjct: 341 ------KVERLWFKDVEIDIYGDG--------IAGECKWSEGINGEKVLYELKRKVEDLG 386
Query: 419 LEGWEKHYAIVARDVQGKEDLEDNSHIWDLRDFEE 453
L+ K Y I A+ + + DL+ E+
Sbjct: 387 LD--VKKYIIFAKSF---SKTNEEAEFIDLKKLEQ 416
>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
Length = 350
Score = 201 bits (505), Expect = 2e-50
Identities = 127/350 (36%), Positives = 196/350 (55%), Gaps = 20/350 (5%)
Query: 2 ILVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEESE 61
+++ +F++R +ELE LR + LII+YGRRR+GKT L+ + L + +Y L +E E
Sbjct: 9 MIMHKFVNRSEELEKLRAYLE--KRSLIIVYGRRRVGKTRLIIEALKDTPHVYHLCKEEE 66
Query: 62 T--VLEDFSERLAEYFNDPFLKENPLRNWGAFFAYLAGKSSERLVVVIDEVQYIAKSQKD 119
L S++L D E+P ++ F L G + +V+DE + K+
Sbjct: 67 PRETLVSLSKKLYHATGDAQFLESPPSSFDELFELLGGIG---ITLVLDEFPLLVKNYPR 123
Query: 120 FLSTLQKYWDLYLSDTKIMLILCGSLVSFMEGILSAKSPIYGRRTGAWKVEEMDFFNAWK 179
L LQ+YWD + ++LCGS VS M+G+ SPI+GRRT + KV+ ++F + +
Sbjct: 124 ILGLLQEYWDFGEGGS---VVLCGSSVSMMKGLTDYGSPIHGRRTISVKVKPLEFRHVGE 180
Query: 180 FHD-VDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELLLSKGAKYYDEPKYLLKQEL 238
F E +V Y V G+P+YL ++P+ EN+ +G Y+E + LL+ EL
Sbjct: 181 FFPGYSPEELVRAYGVLDGIPEYLLRFDPSQSVEENVIREFFGRGY-LYEEAELLLRYEL 239
Query: 239 RDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIEEETPVI---GKG 295
RD+S Y +IL AIA GYT F +I K ++ L++YL L E+ ++ E PV+ K
Sbjct: 240 RDLSTYNTILEAIAAGYTSFNEIKTKTGMDGSKLSRYLSTLEELELVKREYPVLPGAAKR 299
Query: 296 R---TIYRIRDNLFAFWFRFVYPRRSEIEMG-FDV-VEEIKGEFNDYLGK 340
R Y + DN FAF++ FVYP + EIE+G DV +E + +FN YLG+
Sbjct: 300 RRKGARYGLSDNYFAFYYSFVYPFKEEIELGLLDVPLENFRRKFNRYLGR 349
>pir||E75058 hypothetical protein PAB1412 - Pyrococcus abyssi (strain Orsay)
>gi|5458875|emb|CAB50362.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 161 bits (402), Expect = 2e-38
Identities = 85/192 (44%), Positives = 125/192 (64%), Gaps = 2/192 (1%)
Query: 102 RLVVVIDEVQYIAKSQKDFLSTLQKYWDLYLSDTKIMLILCGSLVSFMEG-ILSAKSPIY 160
R+V++IDE + + + LS LQK WDL LS T IMLI+ GS VS ME IL+ KSP+Y
Sbjct: 11 RVVLIIDEFPLLVEHYRPVLSLLQKAWDLKLSRTNIMLIIYGSSVSVMESEILAYKSPLY 70
Query: 161 GRRTGAWKVEEMDFFNAWKF-HDVDAETVVHIYSVFGGVPQYLADYNPNLDFWENLRELL 219
GRRTG W++ E+ FF +F E ++ ++ V G +P YL ++ N F EN+ E +
Sbjct: 71 GRRTGQWRLTEIPFFYIGEFLPGYTIEDLMKVWGVTGEIPAYLLQFSSNKSFDENVVERV 130
Query: 220 LSKGAKYYDEPKYLLKQELRDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVL 279
L KGA Y+E ++LL++ELR+ + YF+IL+AIA G RFG+I + ++ ++KYL VL
Sbjct: 131 LFKGAFLYEEAEFLLREELREPANYFAILQAIASGRNRFGEIVNATGLDKSLVSKYLTVL 190
Query: 280 SEMGYIEEETPV 291
+G ++ E PV
Sbjct: 191 QRLGIVKREVPV 202
>pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (strain Orsay)
>gi|5458874|emb|CAB50361.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 157
Score = 157 bits (392), Expect = 3e-37
Identities = 77/157 (49%), Positives = 104/157 (66%), Gaps = 6/157 (3%)
Query: 301 IRDNLFAFWFRFVYPRRSEIEMGF--DVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGR 358
I DN FAFWFR+V P + +E G DV E K +FN YLG FE + R V L G
Sbjct: 2 INDNYFAFWFRYVLPNKVYLEAGLAEDVWERSKDDFNIYLGLIFEKLVRNPEVFLRLTG- 60
Query: 359 LPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIG 418
F FTK+GRWW RGEEV+++A+NE EKKA+L+ V+WK L ++ + IL DL RK+EL+G
Sbjct: 61 --FHFTKLGRWWRRGEEVNVLALNEREKKALLIEVKWKELSKREAKGILRDLGRKAELVG 118
Query: 419 LEGWEKHYAIVARDVQGKEDLEDNSHI-WDLRDFEEL 454
L+ W++ Y +VA+ + E+L + + WDLRDFE L
Sbjct: 119 LDSWKRFYGVVAKKIDDMEELREEGWLAWDLRDFEGL 155
>pir||A71133 hypothetical protein PHS026 - Pyrococcus horikoshii
>gi|3257240|dbj|BAA29923.1| (AP000003) 96aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 96
Score = 142 bits (354), Expect = 9e-33
Identities = 67/89 (75%), Positives = 77/89 (86%)
Query: 1 MILVSRFIDREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES 60
MIL S+F+DRE EL FLR+ + SG+AELI+IYGRRRIGKTYLL+KFL E GIYLLAEE+
Sbjct: 3 MILTSKFVDRERELNFLREHYHSGKAELIVIYGRRRIGKTYLLRKFLEETNGIYLLAEEN 62
Query: 61 ETVLEDFSERLAEYFNDPFLKENPLRNWG 89
ET LEDFS RLA+YF DPFLKENP+R WG
Sbjct: 63 ETNLEDFSLRLADYFKDPFLKENPIRTWG 91
>sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir||A64353 hypothetical
protein MJ0425 - Methanococcus jannaschii
>gi|1591128|gb|AAB98412.1| (U67494) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 140
Score = 89.7 bits (219), Expect = 6e-17
Identities = 51/144 (35%), Positives = 82/144 (56%), Gaps = 13/144 (9%)
Query: 313 VYPRRSEIEMGF--DVVEEIKGEFNDYLGKAFEGIARQFLVRLNTLGRLPFRFTKIGRWW 370
VYP +++E+G +V +I N+Y GK FE + + L L + F + +WW
Sbjct: 5 VYPNMADLEIGNVKEVYNKILASLNEYYGKMFENLVFEML----KLKIIDFGQKSVAKWW 60
Query: 371 HRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRRILGDLRRKSELIGLEGWEKHYAIVA 430
H+GEE+D++A N + K + V+WK+L K+ + IL DL RK + + +G EK I+A
Sbjct: 61 HKGEEIDVLAYNNN--KMIAFEVKWKDLSFKEAKGILRDLERKLDKVDFDG-EKECYIIA 117
Query: 431 RDVQGKEDLEDNSHIWDLRDFEEL 454
+ ++GKE L+ DL D E+L
Sbjct: 118 KSIEGKEKLK----ALDLMDLEKL 137
>pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii
>gi|3257255|dbj|BAA29938.1| (AP000003) 103aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 103
Score = 86.2 bits (210), Expect = 7e-16
Identities = 43/109 (39%), Positives = 62/109 (56%), Gaps = 11/109 (10%)
Query: 299 YRIRDNLFAFWFRFVYPRRS--EIEMGFDVVEEIKGEFNDYLGKAFEGIARQFLVRLNTL 356
Y I DN +AFWFRFVYP R E E+ + +E +K ++N Y+G+ FE + FL +
Sbjct: 3 YEIADNYYAFWFRFVYPNRKLVERELYKEALELVKRDYNHYMGRVFEKASLDFLWK---- 58
Query: 357 GRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDVRR 405
F F + GRWW R EE+D+V + A V+WK+L ++ RR
Sbjct: 59 ---RFAFERAGRWWSREEEIDVVGVKRG--MAYFFEVKWKDLSEREARR 102
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 76.1 bits (184), Expect = 8e-13
Identities = 91/327 (27%), Positives = 141/327 (42%), Gaps = 58/327 (17%)
Query: 9 DREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYL------------- 55
DRE E + L K S + ++ G RR+GK+ LL+ +L+E GI +
Sbjct: 16 DREKEFKKLEK--SIEDYPMTLLLGIRRVGKSSLLKAYLSENPGILIDCRELYGERGHIT 73
Query: 56 ------LAEESETVLEDFSERLAEYFNDPFLKENPLR-NWGAFFAYL--AGKSSERLVVV 106
+E +++ R + FLK P + F L GK + V+
Sbjct: 74 RIDLIRKLQERGNIVQKLLSRFKVSLDLKFLKIEPKEVSLMDIFESLNEIGKKMGKFVLA 133
Query: 107 IDEVQYI----AKSQKDFLSTLQKYWDLYLSDTKIMLILCGSLVSFME---GILSAKSPI 159
DE QY+ ++ KD L+ +D L + KI +L GS V + GI +SP+
Sbjct: 134 FDEAQYLRFYGSRGGKDLLALFAYAYD-NLENLKI--VLTGSEVGLLHDFLGINDYESPL 190
Query: 160 YGRRTGAWKVEEMDFFNAWKFH---------DVDAETVVHIYSVFGGVPQYLADYNPNLD 210
YGR G VE D + +F +V+ E + + G+P +L +
Sbjct: 191 YGRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEIIEKAIEMLDGIPGWLVLFGV--- 247
Query: 211 FWENLRELLLSKGAKY-YDEPKYLLKQELRDVS----RYFSILRAIALGYTRFGQIADKA 265
E +RE K K ++ K L+ ELR++ RY ILR IALGY R+ I D
Sbjct: 248 --EYMREKDYEKAMKRTFEVAKGLILGELRELEKRSRRYLEILRGIALGYNRWSLIRDYL 305
Query: 266 RIEA-----KSLAKYLHVLSEMGYIEE 287
++ L + L+ L +MG+I E
Sbjct: 306 AVKGIPTPEPRLYELLNNLKKMGWINE 332
>pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (strain Orsay)
>gi|5458554|emb|CAB50042.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 207
Score = 71.0 bits (171), Expect = 3e-11
Identities = 57/182 (31%), Positives = 95/182 (51%), Gaps = 20/182 (10%)
Query: 28 LIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES--ETVLEDFSERLAEYFNDPFLKENPL 85
L+++ GRRRIGK+ L+++FL I + E E L ++ L +YFN P
Sbjct: 12 LVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFN------IPT 65
Query: 86 RNWGAF---FAYLAGKSSERLVVVIDEVQYIAKSQKDFLSTLQKYWDLYLSDTKIMLILC 142
N+ F F ++A +S ERLV + ++Y + + +F ST+ D L ++ IMLIL
Sbjct: 66 PNFSTFSDAFRFVASQSKERLVAYL--LRY-SDVEAEFQSTV----DEILEESNIMLILS 118
Query: 143 GSLVSFME-GILSAKSPIYGRRTGAWKVEEMDFFNAWK-FHDVDAETVVHIYSVFGGVPQ 200
S + ++ S +YGR ++ + F + ++ F + AE V +YSV G+P+
Sbjct: 119 ASSMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPR 178
Query: 201 YL 202
YL
Sbjct: 179 YL 180
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 70.2 bits (169), Expect = 5e-11
Identities = 89/331 (26%), Positives = 138/331 (40%), Gaps = 64/331 (19%)
Query: 9 DREDELEFLRKRWSSGRAELIIIYGRRRIGKTYLLQKFLAEVGGIYL------------- 55
DRE+E L + S L ++ G RR+GK+ LL+ FL E GI +
Sbjct: 16 DREEEFRKLEE--SLENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHIT 73
Query: 56 ---LAEESETVLEDFSERLAEY---FNDPFLKENPLR-NWGAFFAYL--AGKSSERLVVV 106
L +E ++ + F + +++ N FL P + + F L G+ +V
Sbjct: 74 REELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVA 133
Query: 107 IDEVQYI----AKSQKDFLSTLQKYWDLYLSDTKIMLILCGSLVSFMEGILSA---KSPI 159
DE QY+ ++ K+ L+ +D S + +IL GS V + L +SP+
Sbjct: 134 FDEAQYLRFYGSRGGKELLALFAYAYD---SLPNLKIILTGSEVGLLHDFLKITDYESPL 190
Query: 160 YGRRTGAWKVEEMDFFNAWKFH---------DVDAETVVHIYSVFGGVPQYLA----DYN 206
YGR G V+ D + +F DV + + G+P +L +Y
Sbjct: 191 YGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGWLVVFGVEYL 250
Query: 207 PNLDFWENLRELLLSKGAKYYDEPKYLLKQELRDVSR----YFSILRAIALGYTRFGQIA 262
N DF ++ L + K L+ EL ++ R Y ILRAIALGY R+ I
Sbjct: 251 RNGDFGRAMKRTL--------EVAKGLIMGELEELRRRSPRYVDILRAIALGYNRWSLIR 302
Query: 263 D-----KARIEAKSLAKYLHVLSEMGYIEEE 288
D +I L L L +M +I EE
Sbjct: 303 DYLAVKGTKIPEPRLYALLENLKKMNWIVEE 333
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169982779
Number of Sequences: 2977
Number of extensions: 7261918
Number of successful extensions: 17715
Number of sequences better than 1.0e-10: 26
Number of HSP's better than 0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 17591
Number of HSP's gapped (non-prelim): 28
length of query: 459
length of database: 189,106,746
effective HSP length: 53
effective length of query: 406
effective length of database: 157,386,935
effective search space: 63899095610
effective search space used: 63899095610
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 167 (69.5 bits)