BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1604 (PAB1604) DE:LPS BIOSYNTHESIS RFBU RELATED PROTEIN
         (377 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75095 lps biosynthesis rfbu related protein PAB1604 - Pyro...   759  0.0
pir||E75095 hypothetical protein PAB1606 - Pyrococcus abyssi (st...   114  2e-24

>pir||G75095 lps biosynthesis rfbu related protein PAB1604 - Pyrococcus abyssi
           (strain Orsay) >gi|5458580|emb|CAB50068.1| (AJ248286)
           LPS BIOSYNTHESIS RFBU RELATED PROTEIN [Pyrococcus
           abyssi]
           Length = 377
           
 Score =  759 bits (1938), Expect = 0.0
 Identities = 377/377 (100%), Positives = 377/377 (100%)

Query: 1   MANRKKIFMVLTNPFKPDPRVYKEARTLIGLGFDVTVVAWDREGGYKSFDMVDGIKVYRI 60
           MANRKKIFMVLTNPFKPDPRVYKEARTLIGLGFDVTVVAWDREGGYKSFDMVDGIKVYRI
Sbjct: 1   MANRKKIFMVLTNPFKPDPRVYKEARTLIGLGFDVTVVAWDREGGYKSFDMVDGIKVYRI 60

Query: 61  SIISRYASLFDFLVKLPLFYLNAMLYILKNRDGLYAIHANDFDTAPLAFFISRILGVKFI 120
           SIISRYASLFDFLVKLPLFYLNAMLYILKNRDGLYAIHANDFDTAPLAFFISRILGVKFI
Sbjct: 61  SIISRYASLFDFLVKLPLFYLNAMLYILKNRDGLYAIHANDFDTAPLAFFISRILGVKFI 120

Query: 121 FDIHDLYYTRISLLEEQEKDTILRKILRRTEILFAKLSDSVITVSRSIGGKHKGLKEFLV 180
           FDIHDLYYTRISLLEEQEKDTILRKILRRTEILFAKLSDSVITVSRSIGGKHKGLKEFLV
Sbjct: 121 FDIHDLYYTRISLLEEQEKDTILRKILRRTEILFAKLSDSVITVSRSIGGKHKGLKEFLV 180

Query: 181 NSGVPPDKIYVVWNAPDPRVFPRVKRHKHRGIVVGYIGTIRSISNFIPLFEIAKENMLLR 240
           NSGVPPDKIYVVWNAPDPRVFPRVKRHKHRGIVVGYIGTIRSISNFIPLFEIAKENMLLR
Sbjct: 181 NSGVPPDKIYVVWNAPDPRVFPRVKRHKHRGIVVGYIGTIRSISNFIPLFEIAKENMLLR 240

Query: 241 IIFVGSGPLKDEIRELLSIKYPNIRVDFIESVPYEKVSEYYTLCDVIYSVYPMTTNIKMA 300
           IIFVGSGPLKDEIRELLSIKYPNIRVDFIESVPYEKVSEYYTLCDVIYSVYPMTTNIKMA
Sbjct: 241 IIFVGSGPLKDEIRELLSIKYPNIRVDFIESVPYEKVSEYYTLCDVIYSVYPMTTNIKMA 300

Query: 301 IAVKMLESIIMGIPVIVNKDTLMEDFVNIYKCGVAVDMNVGSIKNALDKIKKIRPPTRLR 360
           IAVKMLESIIMGIPVIVNKDTLMEDFVNIYKCGVAVDMNVGSIKNALDKIKKIRPPTRLR
Sbjct: 301 IAVKMLESIIMGIPVIVNKDTLMEDFVNIYKCGVAVDMNVGSIKNALDKIKKIRPPTRLR 360

Query: 361 DKWTWDKNRESIRKAYS 377
           DKWTWDKNRESIRKAYS
Sbjct: 361 DKWTWDKNRESIRKAYS 377


>pir||E75095 hypothetical protein PAB1606 - Pyrococcus abyssi (strain Orsay)
           >gi|5458578|emb|CAB50066.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 384
           
 Score =  114 bits (283), Expect = 2e-24
 Identities = 101/388 (26%), Positives = 185/388 (47%), Gaps = 35/388 (9%)

Query: 5   KKIFMVLTNPFKPDPRVYKEARTLIGLGFDVTVVAWDREGGYKSFDMVDGIKVYRISIIS 64
           + + M+L N +  DPRV  EA +L   G++V V+AWDR+G Y   ++++G+++ RI I  
Sbjct: 3   ENVLMILNNHYTHDPRVTAEAESLTKGGYNVKVIAWDRKGQYPPHEIINGVEIIRIKIPK 62

Query: 65  RYASLFDF-LVKLPLFYLNA---MLYILKNRDGLYAIHANDFDTAPLAFFISRILGVKFI 120
            +  L  F ++K+P++ + A    L + KN      +H +D+   P+  ++ + LGV+ I
Sbjct: 63  IFEMLIPFEILKVPIWQILAYRMALQLYKNWK-FRIVHVHDWPDLPIGVWLKKKLGVRVI 121

Query: 121 FDIHDL--YYTRISLLEEQEKDTILRKILRRTEILFAKLSDSVITVSRSIGGKHKGLKEF 178
           +D H++  Y     L+ +      LR+ + R +   ++  D +ITVS       KG  E+
Sbjct: 122 YDSHEIWSYMFLRGLIPK-----FLREPVWREQYFVSRHVDVIITVS-------KGAAEY 169

Query: 179 LVNSGVPPDKIYVVWNAPDPRVFPRVKRHKHRGIVVGYIGTIRSISNFIPLFE-IAKENM 237
            +       K+ +V N    R   + +R     + V YIG        + L + I+K   
Sbjct: 170 FLRF---YPKVRLVRNMKQRRE-SKWERPDISTLRVVYIGGFDKNRCILELVKAISKIGH 225

Query: 238 LLRIIFVGSGPLKDEIRELLSIKYPNIRVDFIESVPYEKVSEYYTLCDVIYSVYPMTTNI 297
            +  IF  +GP    I +++ +   N  V ++  +P E+V        ++Y V+     +
Sbjct: 226 KIEGIF--AGPEVKGISDVIVMHSNNFPVKYLGFIPREQVLNVTKKGSLVYLVFNSKDPL 283

Query: 298 -KMAIAVKMLESIIMGIPVIVNKDTLMEDFVNIYKCGVAVDMNVGSIKNALDK------- 349
            ++ +A K+ E+I++G   +  K T    FV  YK G+ V+  V  IK AL         
Sbjct: 284 YRIGLANKLFEAIVVGRACLAGKGTASGKFVKDYKIGLVVNCEVEEIKKALITLIENPKL 343

Query: 350 -IKKIRPPTRLRDKWTWDKNRESIRKAY 376
            IK  +    +  K+ W++  + + K Y
Sbjct: 344 IIKFGKRAYSIGSKYNWERESKKLLKIY 371


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.144    0.423 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138005272
Number of Sequences: 2977
Number of extensions: 5652233
Number of successful extensions: 15803
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15801
Number of HSP's gapped (non-prelim): 2
length of query: 377
length of database: 189,106,746
effective HSP length: 53
effective length of query: 324
effective length of database: 157,386,935
effective search space: 50993366940
effective search space used: 50993366940
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 166 (69.1 bits)