BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1606 (PAB1606) DE:Hypothetical protein
(384 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75095 hypothetical protein PAB1606 - Pyrococcus abyssi (st... 787 0.0
pir||G75095 lps biosynthesis rfbu related protein PAB1604 - Pyro... 114 2e-24
pir||D83253 probable glycosyltransferase WbpH PA3149 [imported] ... 78 2e-13
gb|AAC46092.1| (U81973) Cap5I [Staphylococcus aureus] 73 7e-12
>pir||E75095 hypothetical protein PAB1606 - Pyrococcus abyssi (strain Orsay)
>gi|5458578|emb|CAB50066.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 384
Score = 787 bits (2010), Expect = 0.0
Identities = 384/384 (100%), Positives = 384/384 (100%)
Query: 1 MSENVLMILNNHYTHDPRVTAEAESLTKGGYNVKVIAWDRKGQYPPHEIINGVEIIRIKI 60
MSENVLMILNNHYTHDPRVTAEAESLTKGGYNVKVIAWDRKGQYPPHEIINGVEIIRIKI
Sbjct: 1 MSENVLMILNNHYTHDPRVTAEAESLTKGGYNVKVIAWDRKGQYPPHEIINGVEIIRIKI 60
Query: 61 PKIFEMLIPFEILKVPIWQILAYRMALQLYKNWKFRIVHVHDWPDLPIGVWLKKKLGVRV 120
PKIFEMLIPFEILKVPIWQILAYRMALQLYKNWKFRIVHVHDWPDLPIGVWLKKKLGVRV
Sbjct: 61 PKIFEMLIPFEILKVPIWQILAYRMALQLYKNWKFRIVHVHDWPDLPIGVWLKKKLGVRV 120
Query: 121 IYDSHEIWSYMFLRGLIPKFLREPVWREQYFVSRHVDVIITVSKGAAEYFLRFYPKVRLV 180
IYDSHEIWSYMFLRGLIPKFLREPVWREQYFVSRHVDVIITVSKGAAEYFLRFYPKVRLV
Sbjct: 121 IYDSHEIWSYMFLRGLIPKFLREPVWREQYFVSRHVDVIITVSKGAAEYFLRFYPKVRLV 180
Query: 181 RNMKQRRESKWERPDISTLRVVYIGGFDKNRCILELVKAISKIGHKIEGIFAGPEVKGIS 240
RNMKQRRESKWERPDISTLRVVYIGGFDKNRCILELVKAISKIGHKIEGIFAGPEVKGIS
Sbjct: 181 RNMKQRRESKWERPDISTLRVVYIGGFDKNRCILELVKAISKIGHKIEGIFAGPEVKGIS 240
Query: 241 DVIVMHSNNFPVKYLGFIPREQVLNVTKKGSLVYLVFNSKDPLYRIGLANKLFEAIVVGR 300
DVIVMHSNNFPVKYLGFIPREQVLNVTKKGSLVYLVFNSKDPLYRIGLANKLFEAIVVGR
Sbjct: 241 DVIVMHSNNFPVKYLGFIPREQVLNVTKKGSLVYLVFNSKDPLYRIGLANKLFEAIVVGR 300
Query: 301 ACLAGKGTASGKFVKDYKIGLVVNCEVEEIKKALITLIENPKLIIKFGKRAYSIGSKYNW 360
ACLAGKGTASGKFVKDYKIGLVVNCEVEEIKKALITLIENPKLIIKFGKRAYSIGSKYNW
Sbjct: 301 ACLAGKGTASGKFVKDYKIGLVVNCEVEEIKKALITLIENPKLIIKFGKRAYSIGSKYNW 360
Query: 361 ERESKKLLKIYDILLEGDSNADRG 384
ERESKKLLKIYDILLEGDSNADRG
Sbjct: 361 ERESKKLLKIYDILLEGDSNADRG 384
>pir||G75095 lps biosynthesis rfbu related protein PAB1604 - Pyrococcus abyssi
(strain Orsay) >gi|5458580|emb|CAB50068.1| (AJ248286)
LPS BIOSYNTHESIS RFBU RELATED PROTEIN [Pyrococcus
abyssi]
Length = 377
Score = 114 bits (283), Expect = 2e-24
Identities = 101/388 (26%), Positives = 185/388 (47%), Gaps = 35/388 (9%)
Query: 3 ENVLMILNNHYTHDPRVTAEAESLTKGGYNVKVIAWDRKGQYPPHEIINGVEIIRIKIPK 62
+ + M+L N + DPRV EA +L G++V V+AWDR+G Y ++++G+++ RI I
Sbjct: 5 KKIFMVLTNPFKPDPRVYKEARTLIGLGFDVTVVAWDREGGYKSFDMVDGIKVYRISIIS 64
Query: 63 IFEMLIPFEILKVPIWQILAYRMALQLYKNWK-FRIVHVHDWPDLPIGVWLKKKLGVRVI 121
+ L F ++K+P++ + A L + KN +H +D+ P+ ++ + LGV+ I
Sbjct: 65 RYASLFDF-LVKLPLFYLNA---MLYILKNRDGLYAIHANDFDTAPLAFFISRILGVKFI 120
Query: 122 YDSHEIWSYMFLRGLIPK-----FLREPVWREQYFVSRHVDVIITVS-------KGAAEY 169
+D H++ Y L+ + LR+ + R + ++ D +ITVS KG E+
Sbjct: 121 FDIHDL--YYTRISLLEEQEKDTILRKILRRTEILFAKLSDSVITVSRSIGGKHKGLKEF 178
Query: 170 FLRF---YPKVRLVRNMKQRRE-SKWERPDISTLRVVYIGGFDKNRCILELVKAISKIGH 225
+ K+ +V N R + +R + V YIG + L + I+K
Sbjct: 179 LVNSGVPPDKIYVVWNAPDPRVFPRVKRHKHRGIVVGYIGTIRSISNFIPLFE-IAKENM 237
Query: 226 KIEGIF--AGPEVKGISDVIVMHSNNFPVKYLGFIPREQVLNVTKKGSLVYLVFNSKDPL 283
+ IF +GP I +++ + N V ++ +P E+V ++Y V+ +
Sbjct: 238 LLRIIFVGSGPLKDEIRELLSIKYPNIRVDFIESVPYEKVSEYYTLCDVIYSVYPMTTNI 297
Query: 284 YRIGLANKLFEAIVVGRACLAGKGTASGKFVKDYKIGLVVNCEVEEIKKALITLIENPKL 343
++ +A K+ E+I++G + K T FV YK G+ V+ V IK AL
Sbjct: 298 -KMAIAVKMLESIIMGIPVIVNKDTLMEDFVNIYKCGVAVDMNVGSIKNALDK------- 349
Query: 344 IIKFGKRAYSIGSKYNWERESKKLLKIY 371
IK + + K+ W++ + + K Y
Sbjct: 350 -IKKIRPPTRLRDKWTWDKNRESIRKAY 376
>pir||D83253 probable glycosyltransferase WbpH PA3149 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|1545857|gb|AAC45862.1|
(U50396) WbpH [Pseudomonas aeruginosa]
>gi|9949263|gb|AAG06537.1|AE004738_11 (AE004738)
probable glycosyltransferase WbpH [Pseudomonas
aeruginosa]
Length = 373
Score = 78.0 bits (189), Expect = 2e-13
Identities = 99/383 (25%), Positives = 169/383 (43%), Gaps = 36/383 (9%)
Query: 12 HYTHDPRV-TAEAESLTKGGYNVKVIAWDRKGQYPPHEIINGVEIIRIKIPKIFEMLIPF 70
H +D R+ + +L++ GY+V ++ D KG E+ +GV I+ + + +
Sbjct: 11 HSRYDIRIFRKQCRTLSQYGYDVYLVVADGKGD----EVKDGVRIVDVGV-------LSG 59
Query: 71 EILKVPIWQILAYRMALQLYKNWKFRIVHVHDWPDLPIGVWLKKKLGVRVIYDSHE-IWS 129
+ ++ Y AL L + + H HD +P+G+ LKK+ G +VI+DSHE +
Sbjct: 60 RLNRILKTTRKIYEQALALGAD----VYHFHDPELIPVGLRLKKQ-GKQVIFDSHEDVPK 114
Query: 130 YMFLRGLIPKFLREPV-----WREQYFVSRHVDVIITVSKGAAEYFLRFYPKVRLVRNMK 184
+ + + FLR V E+Y + +D ++T + E F V + N
Sbjct: 115 QLLSKPYMRPFLRRVVAVLFSCYEKYACPK-LDAVLTATPHIREKFKNINGNVLDINNFP 173
Query: 185 QRRESKWERPDIST-LRVVYIGGFDKNRCILELVKAI----SKIGHKIEGIFAGPEVKGI 239
E P S V Y+GG R + E+VK++ S + G F+ PE++
Sbjct: 174 MLGELDAMVPWASKKTEVCYVGGITSIRGVREVVKSLECLKSSARLNLVGKFSEPEIE-- 231
Query: 240 SDVIVMHSNNFPVKYLGFIPREQVLNVTKKGSLVYLVFNSKDPLYRIGLANKLFEAIVVG 299
+V + N V G + RE V V S+ LV P + NK+FE + G
Sbjct: 232 KEVRALKGWN-SVNEHGQLDREDVRRVLGD-SVAGLVTFLPMPNHVDAQPNKMFEYMSSG 289
Query: 300 RACLAGKGTASGKFVKDYKIGLVVN-CEVEEIKKALITLIENPKLIIKFGKRAY-SIGSK 357
+A + V+ G+ V+ I +A+ L+ NP G+ ++ +
Sbjct: 290 IPVIASNFPLWREIVEGSNCGICVDPLSPAAIAEAIDYLVSNPCEAAALGRNGQRAVNER 349
Query: 358 YNWERESKKLLKIY-DILLEGDS 379
YNW+ E +KL + Y D+L + DS
Sbjct: 350 YNWDLEGRKLARFYSDLLSKRDS 372
>gb|AAC46092.1| (U81973) Cap5I [Staphylococcus aureus]
Length = 369
Score = 72.6 bits (175), Expect = 7e-12
Identities = 78/374 (20%), Positives = 161/374 (42%), Gaps = 16/374 (4%)
Query: 5 VLMILNNHYTHDPRVTAEAESLTKGGYNVKVIAWDRKGQYPPHEIINGVEIIRIKIPKIF 64
+L I++++ DPRV + E++ + K++ G +E + +
Sbjct: 3 ILNIVSSNIVQDPRVLKQIETIKDVTDDYKIV-----GMNNSQATNKRLENLDCNYRLLG 57
Query: 65 EMLIPFEILKVPIWQILAYRMALQLYKNWKFRIVHVHDWPDLPIGVWLKKKLGVRVIYDS 124
+ P IL I +I ++ K +K ++H +D+ D+ + V+L ++YD+
Sbjct: 58 SKVDPKNILSKLIKRIRFATGVIREIKAYKPDVIHANDF-DVLLMVYLSNYKKANIVYDA 116
Query: 125 HEIWSYMFLRGLIPKFLREPVWREQYFVSRHVDVIITVSKGAAEYFLR--FYPKVRLVRN 182
HEI++ +P + E++ V V+ +TVS A EY+ + + ++ N
Sbjct: 117 HEIYAKNAFINKVPLISKFVESIEKHIVKHRVNAFVTVSHAAKEYYQSKGYKKEANVITN 176
Query: 183 MKQRRESKWERPDISTLRVVYIGGFDKNRCILELVKAISKIGHKIEGIFA---GPEVKGI 239
+S+ + + +VY G +R E + A S GP + I
Sbjct: 177 APILNDSREFKEIENFKEIVYQGQIVMDRGYEEFIIASSAFKQNAPSFIIRGFGPHEEVI 236
Query: 240 SDVIVMHSNNFPVKYLGFIPREQVLNVTKKGSLVYLVFNSKDPLYRIGLANKLFEAIVVG 299
++I +S N ++ + ++++ + ++ ++ + ++NK+FE I G
Sbjct: 237 KELISYNSEN--IRLDKPVEVRELVDKLAESNVGVVLTKPVSINFEYTVSNKIFECIHAG 294
Query: 300 RACLAGKGTASGKFVKDYKIGLVVNCEVE--EIKKALITLIENPKLIIKFGKRAYSIGSK 357
+ + YK G+V+ EV EI+KA+ L +N L + A
Sbjct: 295 LPVILSPVKEHIYLNEKYKFGIVLK-EVTPLEIEKAVRKLRDNHDLFNHLRQNAIKASKI 353
Query: 358 YNWERESKKLLKIY 371
NW+ ES++L+++Y
Sbjct: 354 LNWQIESERLVELY 367
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.324 0.143 0.435
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145689160
Number of Sequences: 2977
Number of extensions: 6121043
Number of successful extensions: 11209
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 11203
Number of HSP's gapped (non-prelim): 4
length of query: 384
length of database: 189,106,746
effective HSP length: 52
effective length of query: 332
effective length of database: 157,985,422
effective search space: 52451160104
effective search space used: 52451160104
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 166 (69.1 bits)