BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1608 1101362 1101045 -106 !not a gene!
         (106 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71071 hypothetical protein PH1266 - Pyrococcus horikoshii ...   134  4e-31

>pir||G71071 hypothetical protein PH1266 - Pyrococcus horikoshii
          >gi|3257686|dbj|BAA30369.1| (AP000005) 113aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 113
          
 Score =  134 bits (333), Expect = 4e-31
 Identities = 67/82 (81%), Positives = 72/82 (87%), Gaps = 1/82 (1%)

Query: 19 MSIFSGKGSRCFMFILLLLTLFSPAPVTRTKFLSIMSTMTHFCPALLPAIITAILPTSIA 78
          MSIFSG+GSRCFMFILLLLTL SPAPVT+TKFLS+MST+THFCPALLPAIITAILPTSIA
Sbjct: 1  MSIFSGRGSRCFMFILLLLTLLSPAPVTKTKFLSMMSTITHFCPALLPAIITAILPTSIA 60

Query: 79 GIHPTS-QTFSPRVADGAGWSI 99
          GIHPTS   F P    G+ WSI
Sbjct: 61 GIHPTSFSFFDPASPTGSRWSI 82


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.141    0.444 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33304437
Number of Sequences: 2977
Number of extensions: 1110164
Number of successful extensions: 3706
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3704
Number of HSP's gapped (non-prelim): 1
length of query: 106
length of database: 189,106,746
effective HSP length: 47
effective length of query: 59
effective length of database: 160,977,857
effective search space: 9497693563
effective search space used: 9497693563
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 160 (66.7 bits)