BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1612 (PAB1612) DE:CARBAMOYL TRANSFERASE RELATED PROTEIN
(534 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75093 carbamoyl transferase related protein PAB1612 - Pyro... 1058 0.0
pir||H71069 probable nodulation protein - Pyrococcus horikoshii ... 897 0.0
sp|Q58451|YA51_METJA HYPOTHETICAL PROTEIN MJ1051 >gi|2129166|pir... 325 6e-88
sp|Q58458|YA58_METJA HYPOTHETICAL PROTEIN MJ1058 >gi|2129165|pir... 251 2e-65
sp|P55474|NOLO_RHISN NODULATION PROTEIN NOLNO >gi|2182422|gb|AAB... 238 1e-61
pir||A83020 probable carbamoyl transferase PA5005 [imported] - P... 236 6e-61
sp|P74178|YB78_SYNY3 HYPOTHETICAL 69.1 KD PROTEIN SLL1178 >gi|74... 229 6e-59
gb|AAF67507.1|AF170880_14 (AF170880) NovN [Streptomyces spheroides] 220 3e-56
pir||B83388 probable carbamoyl transferase PA2069 [imported] - P... 219 5e-56
gb|AAD32743.1| (AF127374) MmcS [Streptomyces lavendulae] 199 6e-50
gb|AAG02370.1|AF210249_29 (AF210249) carbamyltransferase BlmD [S... 168 1e-40
gi|10957542 nodulation protein-related protein [Deinococcus radi... 164 2e-39
gb|AAC72033.1| (AF047554) putative carbamoyl transferase [Myxoco... 141 1e-32
sp|Q45269|NOLO_BRAJA NODULATION PROTEIN NOLO >gi|1073139|pir||C4... 140 3e-32
sp|P26027|NODU_BRAJA NODULATION PROTEIN U >gi|281686|pir||S27495... 118 2e-25
sp|Q07759|NODU_AZOCA NODULATION PROTEIN U >gi|2120375|pir||PQ004... 116 6e-25
sp|P31957|NODU_RHISN NODULATION PROTEIN U >gi|2120826|pir||S5822... 114 2e-24
emb|CAB40567.1| (AJ132913) putative carbamoyltransferase [Rhizob... 113 5e-24
gb|AAC80569.1| (AF105431) NodU [Bradyrhizobium sp. SNU001] 112 9e-24
sp|Q53515|NODU_RHITR NODULATION PROTEIN U >gi|998363|gb|AAB34511... 111 2e-23
pir||T34834 probable transferase - Streptomyces coelicolor (frag... 111 3e-23
sp|Q51080|CMCH_NOCLA 3'-HYDROXYMETHYLCEPHEM-O-CARBAMOYLTRANSFERA... 103 4e-21
sp|O85728|CMCH_STRCL 3'-HYDROXYMETHYLCEPHEM-O-CARBAMOYLTRANSFERA... 103 6e-21
sp|Q01990|NODU_RHIFR NODULATION PROTEIN U >gi|320401|pir||S28439... 100 4e-20
>pir||G75093 carbamoyl transferase related protein PAB1612 - Pyrococcus abyssi
(strain Orsay) >gi|5458564|emb|CAB50052.1| (AJ248286)
CARBAMOYL TRANSFERASE RELATED PROTEIN [Pyrococcus
abyssi]
Length = 534
Score = 1058 bits (2707), Expect = 0.0
Identities = 534/534 (100%), Positives = 534/534 (100%)
Query: 1 MIILGVHDGHDAGAVLFKGDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVDA 60
MIILGVHDGHDAGAVLFKGDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVDA
Sbjct: 1 MIILGVHDGHDAGAVLFKGDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVDA 60
Query: 61 IAVAGLFRRRNRLLELENELKSVFGSEFRKKVIFVEHHLAHASSAYYTSGLSDAIVLTID 120
IAVAGLFRRRNRLLELENELKSVFGSEFRKKVIFVEHHLAHASSAYYTSGLSDAIVLTID
Sbjct: 61 IAVAGLFRRRNRLLELENELKSVFGSEFRKKVIFVEHHLAHASSAYYTSGLSDAIVLTID 120
Query: 121 AAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYASVTELLGFKPMRHEGKVMSLAAYGK 180
AAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYASVTELLGFKPMRHEGKVMSLAAYGK
Sbjct: 121 AAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYASVTELLGFKPMRHEGKVMSLAAYGK 180
Query: 181 PSYELSAVIEVSGLSFENKLKVIGVEATKKLAEFFSFPLDKAKEVSSNLKRGFMSGKLER 240
PSYELSAVIEVSGLSFENKLKVIGVEATKKLAEFFSFPLDKAKEVSSNLKRGFMSGKLER
Sbjct: 181 PSYELSAVIEVSGLSFENKLKVIGVEATKKLAEFFSFPLDKAKEVSSNLKRGFMSGKLER 240
Query: 241 KAIEIAASAQAHLERLIEEMGLELRKYNLPIAYAGGVAQNVKANAVLRGIFGDIWVFPAM 300
KAIEIAASAQAHLERLIEEMGLELRKYNLPIAYAGGVAQNVKANAVLRGIFGDIWVFPAM
Sbjct: 241 KAIEIAASAQAHLERLIEEMGLELRKYNLPIAYAGGVAQNVKANAVLRGIFGDIWVFPAM 300
Query: 301 DDAGLAFGAAAYIKAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVP 360
DDAGLAFGAAAYIKAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVP
Sbjct: 301 DDAGLAFGAAAYIKAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVP 360
Query: 361 SFVSDSLVDGKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPS 420
SFVSDSLVDGKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPS
Sbjct: 361 SFVSDSLVDGKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPS 420
Query: 421 ILEEDFPKYIEDLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVPEWLGEYYEI 480
ILEEDFPKYIEDLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVPEWLGEYYEI
Sbjct: 421 ILEEDFPKYIEDLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVPEWLGEYYEI 480
Query: 481 IRKFKEKSGVGAVLNTSFNMHGEPIVCSPRDAIRTAKIANLDVLVLEDFAVYPK 534
IRKFKEKSGVGAVLNTSFNMHGEPIVCSPRDAIRTAKIANLDVLVLEDFAVYPK
Sbjct: 481 IRKFKEKSGVGAVLNTSFNMHGEPIVCSPRDAIRTAKIANLDVLVLEDFAVYPK 534
>pir||H71069 probable nodulation protein - Pyrococcus horikoshii
>gi|3257671|dbj|BAA30354.1| (AP000005) 534aa long
hypothetical nodulation protein [Pyrococcus horikoshii]
Length = 534
Score = 897 bits (2292), Expect = 0.0
Identities = 437/532 (82%), Positives = 493/532 (92%)
Query: 1 MIILGVHDGHDAGAVLFKGDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVDA 60
MIILG+HDGHDAGAVL ++IYAVNEERLNR+KKYRGFP LS+RKVLE+ P++VD
Sbjct: 1 MIILGIHDGHDAGAVLLNDEEIYAVNEERLNRVKKYRGFPELSIRKVLEMSGTEPDDVDV 60
Query: 61 IAVAGLFRRRNRLLELENELKSVFGSEFRKKVIFVEHHLAHASSAYYTSGLSDAIVLTID 120
IA+AGLFRR+ RLLELE++LKS+FG +F++K IFVEHHLAHASSAYY+SGL DA+VLTID
Sbjct: 61 IAIAGLFRRQKRLLELEHKLKSIFGPKFKEKAIFVEHHLAHASSAYYSSGLRDAVVLTID 120
Query: 121 AAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYASVTELLGFKPMRHEGKVMSLAAYGK 180
AAGDGLSSTVSIA+ G+MFRIAQSTYIDSLGDFYASVTELLGFKPMRHEGKVMSLAAYG
Sbjct: 121 AAGDGLSSTVSIAKDGQMFRIAQSTYIDSLGDFYASVTELLGFKPMRHEGKVMSLAAYGN 180
Query: 181 PSYELSAVIEVSGLSFENKLKVIGVEATKKLAEFFSFPLDKAKEVSSNLKRGFMSGKLER 240
P YELSA+IE++GL+FENKLKVIG EATKKLAEFF FPL+KAKEVSSNLKRG M +LE+
Sbjct: 181 PRYELSAIIELNGLTFENKLKVIGTEATKKLAEFFEFPLEKAKEVSSNLKRGIMDNELEK 240
Query: 241 KAIEIAASAQAHLERLIEEMGLELRKYNLPIAYAGGVAQNVKANAVLRGIFGDIWVFPAM 300
KAIEIAASAQAHLERLIEEMGLEL+KY LPIAYAGGVAQNVKANA+LR IFGDIW+FPAM
Sbjct: 241 KAIEIAASAQAHLERLIEEMGLELKKYELPIAYAGGVAQNVKANAILRRIFGDIWIFPAM 300
Query: 301 DDAGLAFGAAAYIKAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVP 360
DDAGLAFGAA Y+KAQM++LFGKWKPFKL+HVFLGP YS + +E++LKRE LEYEEVDVP
Sbjct: 301 DDAGLAFGAAIYVKAQMELLFGKWKPFKLKHVFLGPSYSPEEIEEILKREGLEYEEVDVP 360
Query: 361 SFVSDSLVDGKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPS 420
SFV+DSLV+GK+VGLFQG LEYGPRALG+RSILADPR+EKV+EKLNLAL+RDVFQPFAPS
Sbjct: 361 SFVADSLVEGKLVGLFQGRLEYGPRALGNRSILADPRNEKVREKLNLALRRDVFQPFAPS 420
Query: 421 ILEEDFPKYIEDLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVPEWLGEYYEI 480
ILEE FP YIEDLTGEPNRFMTMSY AS+EF+EVAPAVVH+DGTTRPQSVP+ LG YY+I
Sbjct: 421 ILEERFPDYIEDLTGEPNRFMTMSYLASEEFMEVAPAVVHIDGTTRPQSVPKDLGTYYKI 480
Query: 481 IRKFKEKSGVGAVLNTSFNMHGEPIVCSPRDAIRTAKIANLDVLVLEDFAVY 532
IR+F++++GVGAVLNTSFNMHGEPIVCSP DAIRTAK A LDVL+LE F VY
Sbjct: 481 IRRFEKRTGVGAVLNTSFNMHGEPIVCSPLDAIRTAKSAKLDVLLLERFGVY 532
>sp|Q58451|YA51_METJA HYPOTHETICAL PROTEIN MJ1051 >gi|2129166|pir||B64431 nodulation
factor production protein homolog - Methanococcus
jannaschii >gi|1591704|gb|AAB99054.1| (U67548)
nodulation protein [Methanococcus jannaschii]
Length = 513
Score = 325 bits (825), Expect = 6e-88
Identities = 213/537 (39%), Positives = 318/537 (58%), Gaps = 35/537 (6%)
Query: 2 IILGVHDGHDAGAVLFKGDKI-YAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVDA 60
+ILG+ DGH+A + L K D+I +A++EER R K RGFP SV +L +V P+E++
Sbjct: 1 MILGICDGHNASSSLIKRDEILFAMSEERFTRKKNQRGFPEKSVDYILN--KVKPDEINY 58
Query: 61 IAVAGLFRRRNRLLELENELKSVFGSEFRKKVIFVEHHLAHASSAYYTSGLSDAIVLTID 120
++V G+FRR R+ +L+ F + KK ++ HH++H S + S +A+V++ID
Sbjct: 59 VSVGGVFRRGERIKKLKE-----FQNRINKKFLYFYHHISH-SYLFKLSDFKEALVISID 112
Query: 121 AAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYASVTELLGFKPMRHEGKVMSLAAY-G 179
GDGLS SIA K + IAQS IDS+GDFYAS+TELLGFKPM EGKVMSL++Y G
Sbjct: 113 GGGDGLSFLASIANKNNLEIIAQSDLIDSVGDFYASITELLGFKPMEDEGKVMSLSSYEG 172
Query: 180 KPSYELSAVIEVSGL-SFENKLKVIGVEATKKLAEFFSFPLDKAKEVSSNLKRGFMSGKL 238
+ L+ + + L SF+N L VIG EATK L + VS + F
Sbjct: 173 EDDINLTTIDYIKELKSFKNYLGVIGYEATKALKKLI---------VSDKSQLSF----- 218
Query: 239 ERKAIEIAASAQAHLERLIEEMGLEL-RKYNLP-IAYAGGVAQNVKANAVLRGIFGDIWV 296
+ I+ AQ LE ++ + +L +YN+ I + GGVAQNVK N+ + + +++V
Sbjct: 219 -EDKVRISKFAQRTLENIVLKAIDDLSNEYNIDNIVFVGGVAQNVKLNSKIAEKY-NLFV 276
Query: 297 FPAMDDAGLAFGAAAYIKAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEY-E 355
P M D GL GA+ K ++D + F E L+ +++ L K+E+ E
Sbjct: 277 PPFMGDEGLCLGASLADK-RIDRININNTYFGYEIENERAEKILEELKNKLNDYKIEFVE 335
Query: 356 EVDVPSFVSDSLVDGKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQ 415
E D+P + + ++D K+V L +G++E+GPRALG+RS++A P E KEK+N LKR F
Sbjct: 336 ERDIPEVIGNLILDNKVVCLSRGKMEFGPRALGNRSVIALPTKEN-KEKINKKLKRSWFM 394
Query: 416 PFAPSILEEDFPKYIEDLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVPEWLG 475
PFAP+IL + Y+ + P FMT +K + ++ V+HVD TTRPQ++ +
Sbjct: 395 PFAPTILYDFIDDYLINPRYSP--FMTQIFKVKENKIKEIEGVIHVDKTTRPQTLKKDSN 452
Query: 476 E-YYEIIRKFKEKSGVGAVLNTSFNMHGEPIVCSPRDAIRTAKIANLDVLVLEDFAV 531
+ +Y IIR + G+ VLNTSFN+HGEPIVC+ +DAI + A+ D L+L ++ +
Sbjct: 453 KTFYGIIRYIYDSIGIPVVLNTSFNLHGEPIVCNEKDAINSFLKADFDALLLGNYLI 509
>sp|Q58458|YA58_METJA HYPOTHETICAL PROTEIN MJ1058 >gi|2129165|pir||A64432 nodulation
factor production protein homolog - Methanococcus
jannaschii >gi|1591711|gb|AAB99062.1| (U67549)
nodulation protein [Methanococcus jannaschii]
Length = 609
Score = 251 bits (634), Expect = 2e-65
Identities = 191/562 (33%), Positives = 294/562 (51%), Gaps = 67/562 (11%)
Query: 15 VLFKGDKIYAVNEERLNRIKKYRGFPR-LSVRKV-LELGEV-SPEEVDAIAVAGL----F 67
+LFK Y + IK+Y + + LS K L + P + +AV GL F
Sbjct: 72 ILFKHIDDYIKRTYKPKYIKEYAKYKKELSQNKTKFVLNNIYRPFIWEILAVYGLRKLLF 131
Query: 68 RRRNRL------LELENELKSVFGSEFRKKVIFVEHHLAHASSAYYTSGL--SDAIVLTI 119
+R N + L ++ ELK +F RK V EHHL HA+SAYY S + +V T+
Sbjct: 132 KRFNNIYNKLGNLAIKRELKKIF----RKDVSLYEHHLCHAASAYYFSPFFPKETLVFTL 187
Query: 120 DAAGDGLSSTVSIARKGEMFRIAQST-----YID--------SLGDFYASVTELLGFKPM 166
D GD ++ + ++ + ++ S+ Y D S+G Y+ TE+LGF P
Sbjct: 188 DGIGDWKYHSLWLFKEYDYRLVSYSSFDIICYDDVEGIFKGASIGHIYSLFTEILGFTPN 247
Query: 167 RHEGKVMSLAAYGKPSYELSAVIEVSGLSFENKLKVIGVEATKKLAEFFSFPLDKAKEVS 226
EGK +LAAYGKP+ EL +++ + KL+ + ++ K++
Sbjct: 248 SDEGKTEALAAYGKPNGELYNLLKKGYKINKEKLR-------------WEHDINILKKLH 294
Query: 227 SNLKRGFMSGKLERKAIEIAASAQAHLE-RLIEEMGLELRKYNLP-IAYAGGVAQNVKAN 284
+ K+ K + AA+ Q LE ++E + + K+ + +A AGGV NV N
Sbjct: 295 N--KQYLQKWKEKIGDENFAATIQRWLEDTVVEYLNIVYEKFKIQRLAMAGGVVANVIMN 352
Query: 285 AVL--RGIFGDIWVFPAMDDAGLAFGAAAYIKAQM--DILFGKWKPFKLEHVFLGPYYSL 340
+ R F ++++FPAM D G+A GAA ++ DI + K LE + GP YS
Sbjct: 353 LNIFERTPFEELYIFPAMGDDGVAAGAAILKAVELGEDISWLK----DLEMPYWGPNYSR 408
Query: 341 DFVEDVLKREK------LEYEEVDVPSFVSDSLVDGKIVGLFQGELEYGPRALGHRSILA 394
+ VE LK++K EY P ++ + G I+ ++QG++E+GPRALG+RSILA
Sbjct: 409 EDVEKELKKDKWKDKITYEYIGEKWPEIAAEMIAKGNIIAVYQGKMEFGPRALGNRSILA 468
Query: 395 DPRDEKVKEKLNLALK-RDVFQPFAPSILEEDFPKYIEDLTGEPNRFMTMSYKASDEFVE 453
DPRD K ++K+N +K R FQPF PS+LEE+ + E ++ M ++++ EF +
Sbjct: 469 DPRDPKTRDKINSTVKRRPWFQPFCPSVLEEERERLFE--KSYKHKHMAIAFRMKKEFWD 526
Query: 454 VAPAVVHVDGTTRPQSVPEWLG-EYYEIIRKFKEKSGVGAVLNTSFNMHGEPIVCSPRDA 512
P+ +H+DGT RPQ V E YY +++KFKE +G G V+NTSFN+HG IV +P DA
Sbjct: 527 KLPSAMHIDGTARPQFVEEKDNPNYYRLLKKFKEITGYGIVINTSFNLHGRTIVRTPEDA 586
Query: 513 IRTAKIANLDVLVLEDFAVYPK 534
I N+D + +E + V K
Sbjct: 587 ITDFIDCNIDAMFIEGYLVKRK 608
>sp|P55474|NOLO_RHISN NODULATION PROTEIN NOLNO >gi|2182422|gb|AAB91692.1| (AE000076) NolO
[Rhizobium sp. NGR234]
Length = 680
Score = 238 bits (601), Expect = 1e-61
Identities = 193/557 (34%), Positives = 281/557 (49%), Gaps = 57/557 (10%)
Query: 10 HDAGAVLFK-GDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVDAIAVAGLFR 68
HD AVL + G I AV EERLNRIK PR S++ LE V ++D IA
Sbjct: 26 HDGAAVLVRDGQVIAAVEEERLNRIKHSNKLPRRSIQYCLEYAGVQLSDIDCIAYYATEA 85
Query: 69 RRNRLLE------------------LENELKSVFGSEFR-KKVIFVEHHLAHASSAYYTS 109
N +LE L L FG+E ++ FV HHL+HA SA+ S
Sbjct: 86 FCNAMLERLLVSQSHMSIPLDAKLLLRGLLAQEFGTEVDPSRISFVSHHLSHAWSAFSMS 145
Query: 110 GLSDAIVLTIDAAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYASVTELLGFKPMRHE 169
G +++LTID GD S +++ E+ +A DSLG Y + LG+ M E
Sbjct: 146 GFEQSLILTIDGGGDFASGLLAVGSGTEVKPLATFPESDSLGLLYLETIKYLGYG-MFDE 204
Query: 170 GKVMSLAAYGKPSYELSAVIEVSGLSFENKLKVIGVEATKKLAEFFSFPLDKAKEVSSNL 229
KVM LA YG P+ FE +++ + + L ++ EV
Sbjct: 205 YKVMGLAPYGDPAPHRDL--------FEQFYELLDNGGYRIYLDRIGPTLLRSIEV---- 252
Query: 230 KRGFMSGKLERKAIEIAASAQAHLERLIEEMGLELRKYN-----LPIAYAGGVAQNVKAN 284
+R M + K +++AS Q LER++ + LR ++ ++ AGGVA N N
Sbjct: 253 RRKGMPFTQQHK--DLSASLQEALERIVFHV---LRHHSEITGIKRLSLAGGVAHNCTLN 307
Query: 285 AVL--RGIFGDIWVFPAMDDAGLAFGAAAYIKAQMDILFGKWKPF-KLEHVFLGPYYSLD 341
L GIF DI+V PA DAG A GAA + ++ G+ P +L+ V+ GP D
Sbjct: 308 GKLLRSGIFQDIFVQPAAHDAGCALGAALMMSNEL----GQSAPRERLQEVYWGPDLGSD 363
Query: 342 FV---EDVLKREKLEYEEVD-VPSFVSDSLVDGKIVGLFQGELEYGPRALGHRSILADPR 397
E + +E E D V S ++ + DG ++G QG E+GPRALG+RSILADPR
Sbjct: 364 RAVEQELIAWGGHIEIERCDDVASRAAEWIADGAVIGWVQGRSEFGPRALGNRSILADPR 423
Query: 398 DEKVKEKLN-LALKRDVFQPFAPSILEEDFPKYIE-DLTGEPNRFMTMSYKASDEFVEVA 455
K+++N + KR+ ++PFAPS+LEED ++ E + + FM + +
Sbjct: 424 PATNKDRINAIVKKREGYRPFAPSVLEEDANEFFELPDSRQEFPFMNFVVPVRESKRNLL 483
Query: 456 PAVVHVDGTTRPQSVPEWLGE-YYEIIRKFKEKSGVGAVLNTSFNMHGEPIVCSPRDAIR 514
AV HVDGT R Q+V + + Y+E+I F++++GV +LNTSFN + EPIV S DA+
Sbjct: 484 GAVTHVDGTARLQTVSRNINQAYWEVINAFRKRTGVPILLNTSFNNNVEPIVDSVADAVT 543
Query: 515 TAKIANLDVLVLEDFAV 531
T +LD LV+ + +
Sbjct: 544 TFLTTDLDGLVVGSYLI 560
>pir||A83020 probable carbamoyl transferase PA5005 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951291|gb|AAG08390.1|AE004913_5 (AE004913) probable
carbamoyl transferase [Pseudomonas aeruginosa]
Length = 585
Score = 236 bits (595), Expect = 6e-61
Identities = 188/576 (32%), Positives = 280/576 (47%), Gaps = 70/576 (12%)
Query: 10 HDAGAVLF-KGDKIYAVNEERLNRIKKYRG-FPRLSVRKVLELGEVSPEEVDAIAV---- 63
HD A L+ G + AV EER R K + P S + LE + P +VD +A+
Sbjct: 14 HDPSAALYIDGKLVAAVEEERFVRDKHAKNRMPYESAKFCLEQAGIEPADVDVVAIPFAP 73
Query: 64 ------------------------AGLF--RRRNRLLELENELKSVFGSEFRK-KVIFVE 96
A L RR R + G + +K K+ VE
Sbjct: 74 ISIMEKARWHYAKRYAYAPDRALDAILLGNRRYKRYYKRIEWCLQQLGFDLKKIKIQPVE 133
Query: 97 HHLAHASSAYYTSGLSD-AIVLTIDAAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYA 155
HHLAHASSAY+ SG + +L ID G+ ++ G + +I + DSLG Y
Sbjct: 134 HHLAHASSAYHCSGFKEKTAILGIDGKGEYATTFFGWGENGRIHKIKEFYDPDSLGGLYG 193
Query: 156 SVTELLGFKPMRHEGKVMSLAAYGKPS-YELSAVIEVSGLSFENKLKVIGVEATKKLAEF 214
++TE LGF + E KVM +A YG S Y+ S + + FEN VI + A
Sbjct: 194 AITEYLGFDMLDGEFKVMGMAPYGDASKYDFSRLAK-----FENGELVINTD----YANV 244
Query: 215 FSFPLDKAKEVSSNLKRGFMSGKLERKAIEIAASAQAH----LERLIEEMGLELRKYNL- 269
F K K + ++ +IA H ++ L E++ LE+ Y L
Sbjct: 245 IGFRRYKEKGKGYYFSPKLIEWLGPKREGDIADDPYIHYAASIQALFEKLALEMMDYYLG 304
Query: 270 -------PIAYAGGVAQNVKANA--VLRGIFGDIWVFPAMDDAGLAFGAAAYIKAQMDIL 320
+A+AGG A NVK N + R +++V PA DAG A GAAAY+ Q +
Sbjct: 305 DIIRETGKVAFAGGCALNVKLNQKIISRPEVKELFVQPAASDAGTAVGAAAYVSHQRGVP 364
Query: 321 FGKWKPFKLEHVFLGPYYSLDFVEDVLKREKL--EYEEVDVPSF-VSDSLVDGKIVGLFQ 377
K +EHV+LGP YS + V R + +++++ S + L DG V FQ
Sbjct: 365 VEK-----MEHVYLGPEYSNEDVIAACARHEARPQWQKIHNRSRRIGRILADGNPVAWFQ 419
Query: 378 GELEYGPRALGHRSILADPRDEKVKEKLNLALK-RDVFQPFAPSILEEDFPKYIEDLTGE 436
G +E+GPRALG RSIL P V +++N +K R+ ++PF PS+L+ P+ +
Sbjct: 420 GRMEFGPRALGGRSILGCPSVPGVADRINAQIKFRERWRPFCPSMLDTVGPQMFK--IDH 477
Query: 437 PNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVP-EWLGEYYEIIRKFKEKSGVGAVLN 495
P FMT +++ ++E+ E P VVH DGT+R Q + E+ YY+++++ + +G G LN
Sbjct: 478 PAPFMTFTFEVNEEWKERVPEVVHEDGTSRAQVLKREYNPRYYDLMKELENLTGNGVALN 537
Query: 496 TSFNMHGEPIVCSPRDAIRTAKIANLDVLVLEDFAV 531
TS N GEP++CSP DA+ ++L L++ED V
Sbjct: 538 TSLNRRGEPMICSPTDALNMFFGSDLQYLIMEDILV 573
>sp|P74178|YB78_SYNY3 HYPOTHETICAL 69.1 KD PROTEIN SLL1178 >gi|7470759|pir||S75808
nodulation protein - Synechocystis sp. (strain PCC 6803)
>gi|1653353|dbj|BAA18267.1| (D90913) nodulation protein
[Synechocystis sp.]
Length = 615
Score = 229 bits (578), Expect = 6e-59
Identities = 186/607 (30%), Positives = 284/607 (46%), Gaps = 109/607 (17%)
Query: 10 HDAGAVLFK-GDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVDAIA------ 62
HD+ A L K G + AV EER R K FP + L +S +EVD I
Sbjct: 12 HDSAAALVKDGVIVAAVQEERFTRKKHDASFPTQGINYCLGEAGISLKEVDYIVFYEKPL 71
Query: 63 ---------------------VAGLFRRRNRLLELENELKSVFGS--EFRKK----VIFV 95
+A + L L+ LK + + K ++F
Sbjct: 72 VTFERLLETYLAFAPRGLRSFIAAMSAWLQEKLYLKTVLKKALAELGDCKTKDLPPLLFN 131
Query: 96 EHHLAHASSAYYTSGLSDAIVLTIDAAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYA 155
EHH +HA+SA++ S +A VL +D G+ ++++ + ++ + + SLG Y+
Sbjct: 132 EHHQSHAASAFFPSPFDEAAVLCMDGVGEWATTSLWSGQGNQLTPHWEIHFPHSLGLLYS 191
Query: 156 SVTELLGFKPMRHEGKVMSLAAYGKPSYELSAVIEVSGLSFENKLKV--------IGVEA 207
+ T GFK E K+M LA YG+P Y + + L + ++ G+
Sbjct: 192 AFTYYTGFKVNSGEYKLMGLAPYGEPKYVDLILDNLLDLKADGTFRLNMAYFNYATGLTM 251
Query: 208 T-KKLAEFFSFPLDKAKEVSSNLKRGFMSGKLERKAIEIAASAQAHLERLI--------E 258
T KK A+ F P R L ++ ++IAAS Q E+++ E
Sbjct: 252 TNKKFADLFGAP------------RRSPESPLTQREMDIAASIQVVTEKVVLRLGNTVYE 299
Query: 259 EMGLELRKYNLPIAYAGGVAQNVKANAVL--RGIFGDIWVFPAMDDAGLAFGAAA----- 311
E+GLE + AGGVA N AN L G F +IW+ PA DAG A GAA
Sbjct: 300 ELGLE------NLCLAGGVALNCVANGRLLREGKFKNIWIQPAAGDAGGAIGAALSVWHQ 353
Query: 312 YIKAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLE-----YEEVDVPSFVSDS 366
Y++ + + KP + +LGP ++ + +E LK ++ Y + D+ V+
Sbjct: 354 YLQNERMVR----KPDAMAGSYLGPRFTNEEIETYLKGPAVQAVYDYYSDEDLFGKVAHI 409
Query: 367 LVDGKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALK-RDVFQPFAPSILEED 425
L G +VG FQG +E+GPRALG RSI+ DPR+ ++ +NL +K R+ F+PFAPS+L E
Sbjct: 410 LAGGNVVGWFQGRMEFGPRALGGRSIIGDPRNTTMQSVMNLKIKYRESFRPFAPSVLAEK 469
Query: 426 FPKYIEDLTGEPNRFMTMSYKASDEFV--------------------EVAPAVVHVDGTT 465
Y E +P+ +M + +E PA+ HVD +
Sbjct: 470 VGDYFE--LDQPSPYMLIVADVREELRLPLTPEQEQLFGIEKLNIPRSQLPAITHVDNSA 527
Query: 466 RPQSV-PEWLGEYYEIIRKFKEKSGVGAVLNTSFNMHGEPIVCSPRDAIRTAKIANLDVL 524
R Q+V PE YY+++R+F+ + G ++NTSFN+ GEPIVC+P DA R +D L
Sbjct: 528 RIQTVHPETNPRYYQLLRQFEALTDCGVLVNTSFNVRGEPIVCTPEDAYRCFMRTEMDYL 587
Query: 525 VLEDFAV 531
VLE+F +
Sbjct: 588 VLENFVL 594
>gb|AAF67507.1|AF170880_14 (AF170880) NovN [Streptomyces spheroides]
Length = 677
Score = 220 bits (555), Expect = 3e-56
Identities = 187/559 (33%), Positives = 276/559 (48%), Gaps = 55/559 (9%)
Query: 10 HDAGAVLFK-GDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVDAIAVA---- 64
HDA A L + G + AV EERLNRIKK FP ++R+ L P +VDAIA
Sbjct: 27 HDAAATLVRDGVLVAAVEEERLNRIKKTTKFPSNAIRECLAAAGAKPADVDAIAYYFPED 86
Query: 65 ---GLFR-----------RRNRLLELENELKSVFGSEFRKKVI-FVEHHLAHASSAYYTS 109
+F+ R +R + LE L+ G R+ ++ +V HHLAHA S YY S
Sbjct: 87 FFDDIFQQLYTEHPSVPTRYSREMILER-LRVDLGWALRRNILHYVPHHLAHAMSTYYRS 145
Query: 110 GLSDAIVLTIDAAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYASVTELLGFKPMRHE 169
G+ +A+V+ +D AG+ +T+ + E+F IA SLG FY T LG+ E
Sbjct: 146 GMREALVVVMDGAGERNCTTIYRSDGAELFEIASYPVPKSLGMFYLYGTRHLGYG-FGDE 204
Query: 170 GKVMSLAAYGKPSYELSAVIEVSGLSFENKLKVI---GV--EATKKLAEFFSFPLDKAKE 224
KVM LA YG PS + L ++I GV T L E P + +
Sbjct: 205 YKVMGLAPYGDPSTYRDVFSTLYSLGPNGTYELIPRGGVVFRMTTILREHGLQPRRRGEP 264
Query: 225 VSSNLKRGFMSGKLERKAIEIAASAQAHLERL-IEEMGLELRKYNLP-IAYAGGVAQNVK 282
+ + ++ AAS Q E++ + +G R L +A+ GGVA N
Sbjct: 265 FT-------------QAHMDFAASVQETTEQIAMHVIGYWARSTGLRNLAFGGGVAHNST 311
Query: 283 ANA--VLRGIFGDIWVFPAMDDAGLAFGAAAYIKAQMDILFGKWKPFKLEHVFLGPYYS- 339
N + G+F +++V PA DAG + GAA + + W +L + LGP
Sbjct: 312 LNGRILTSGLFDEVFVHPASHDAGSSEGAALVVARERGERV--WPLPRLTNASLGPDLGD 369
Query: 340 LDFVEDVLKREK--LEYEEVD-VPSFVSDSLVDGKIVGLFQGELEYGPRALGHRSILADP 396
+D +E LK ++ E D + + L G+ +G G E+GPRALG+RSILAD
Sbjct: 370 VDSLERTLKSWSPLVDVERPDDIVEATAHLLAAGEAIGWAHGRSEFGPRALGNRSILADA 429
Query: 397 RDEKVKEKLN-LALKRDVFQPFAPSILEEDFPKYIE--DLTGEPNRFMTMSYKASDEFVE 453
R ++ + ++N + KR+ F+PFAP + E Y + + G + FM+ + + E
Sbjct: 430 RPKENQTRINAMVKKRESFRPFAPVVTAEAAGDYFDLPETVGHHD-FMSFVVQVRADRRE 488
Query: 454 VAPAVVHVDGTTRPQSVPEWLG-EYYEIIRKFKEKSGVGAVLNTSFNMHGEPIVCSPRDA 512
+ AV HVDG+ R Q V E ++ ++ +F E +G +LNTSFN H EPIV S D
Sbjct: 489 LLGAVTHVDGSARVQVVTEETNPRFHRLVTRFGELTGTPVLLNTSFNNHAEPIVQSVDDV 548
Query: 513 IRTAKIANLDVLVLEDFAV 531
+ + +LDVLV+EDF V
Sbjct: 549 LTSYLTTSLDVLVIEDFVV 567
>pir||B83388 probable carbamoyl transferase PA2069 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948078|gb|AAG05457.1|AE004633_8 (AE004633) probable
carbamoyl transferase [Pseudomonas aeruginosa]
Length = 574
Score = 219 bits (553), Expect = 5e-56
Identities = 187/583 (32%), Positives = 277/583 (47%), Gaps = 69/583 (11%)
Query: 1 MIILGVHDGHDAGAVLFK-GDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVD 59
MIILG+ + AGA L + G + A +EER R K ++ +P S+ VL + ++D
Sbjct: 1 MIILGITNNDLAGACLVRDGGIVAAASEERFTRQKDHKAWPSRSIDYVLGEAGIDLADID 60
Query: 60 AIAVA---------------------------GLFRRRNRLL-ELENELKS-------VF 84
IA GL R R+ E+ N+ V
Sbjct: 61 RIAYGWNAGFDAGRHLDLYLDRVLEEARERPEGLPHLRKRIADEMANDKAKRGEFDAFVR 120
Query: 85 GSEFRKKVIFVEHHLAHASSAYYTSGLSDAIVLTIDAAGDGLSSTVSIARK-GEMFRIAQ 143
+ R KV +++HH HA A+ S +A+ LT D GD S TV+ R G + +
Sbjct: 121 ANGLRGKVEYIDHHECHALGAFVCSPFDEALTLTCDGRGDFQSLTVTHYRADGGETVLQR 180
Query: 144 STYIDSLGDFYASVTELLGFKPMRHEGKVMSLAAYGKPSYELSAVIEVSGLSFENKLKVI 203
T +DSLG FY +T LLGFKP RHEGK+ LAA+G L + ++ L +L+
Sbjct: 181 ETSVDSLGYFYGRITRLLGFKPNRHEGKITGLAAFGDAEKLLPLMNDMIRLE-NGRLRAR 239
Query: 204 GVEATKKLAEFFSFPLDKAKEVSSNLKRGFMSGKLERKAIEIAASAQAHLERLIEEMGLE 263
E + +S PL ER A ++AA+AQ H E L+ + E
Sbjct: 240 CGELYLPSYDGYSDPL-------------LQRCAAERPA-DVAAAAQRHSEDLLVAIARE 285
Query: 264 --LRKYNLPIAYAGGVAQNVKANAVLRGIFG--DIWVFPAMDDAGLAFGAAAYIKAQMDI 319
R + AGGV NVK N LR I G D++V P M D GLA AA + + +
Sbjct: 286 HVARTGCANLCLAGGVFGNVKLNQRLREIPGVRDVYVLPCMGDGGLALAAAVAVAYREN- 344
Query: 320 LFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVPSFVSDSLV----DGKIVGL 375
F + LGP L + P+ + ++LV + +++G+
Sbjct: 345 ----GTRFPAPSMALGPDARSAAQNAELIASQYPQLAYSRPANLIETLVEALRENQVLGM 400
Query: 376 FQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAP-SILEEDFPKYIEDLT 434
F+G +E+GPRAL +RSI+ P D + LN ++R F PFAP + +E Y+
Sbjct: 401 FKGRMEFGPRALCNRSIVYHPGDASANDWLNQRMERTEFMPFAPVTAVEHAEACYVGWRE 460
Query: 435 GE-PNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSV-PEWLGEYYEIIRKFKEKSGVGA 492
+ +MTM+Y +F PAVVHVDGT RPQ + P+ + ++ + +SG A
Sbjct: 461 HQVAADYMTMTYDCHADFRARCPAVVHVDGTARPQIIRPQADPFMHALLHAWHARSGQPA 520
Query: 493 VLNTSFNMHGEPIVCSPRDAIRTAKIANLDVLVL-EDFAVYPK 534
++NTSFN H EPIVC+P+DA+ + +D++VL E V+ K
Sbjct: 521 LINTSFNRHEEPIVCAPQDALGALEDGMVDLVVLGESLLVWRK 563
>gb|AAD32743.1| (AF127374) MmcS [Streptomyces lavendulae]
Length = 546
Score = 199 bits (501), Expect = 6e-50
Identities = 183/578 (31%), Positives = 273/578 (46%), Gaps = 88/578 (15%)
Query: 1 MIILGVH-DGHDAGAVLFKGDKIYAVNEERLNRIKKYRGFPRL---SVRKVLELGEVSPE 56
M +LG+ GHD + G ++ A++EERL R K G L S R VL+ S E
Sbjct: 1 MTVLGLGGSGHDWASCATDGRRLVAIDEERLVRSKYGLGADLLAGHSRRAVLDALGTSAE 60
Query: 57 EVDAIAVAGLFRRRNRLLELENELKSVFGSEFRKKVIFVEHHLAHASSAYYTSGLSDAIV 116
V+ + L R F FR++V V HHLAHA SA+ SG++ A V
Sbjct: 61 AVEHVVACELVPRP-------------FYHSFRRRVTVVNHHLAHAYSAFGASGMTRAAV 107
Query: 117 LTIDAAGD---GLSS--------TVS--------------IARKGEMFRIAQSTYI---- 147
L D +G GL S T+S +A + ++S Y
Sbjct: 108 LVCDNSGSLVTGLKSGPGPREAETISCYTADASGLRLVNRVAGTHAVDASSESAYYQPGE 167
Query: 148 --DSLGDFYASVTELLGFK--------PMRHEGKVMSLAAYGKPSYELSAVIEVSGLSFE 197
+SLG FY S + LG P+ +GK M LA YG + + V E+ L E
Sbjct: 168 TDNSLGHFYRSASLALGLAYSGPKTRYPVSEDGKTMGLAPYGDDRF-VDEVAELVTLLPE 226
Query: 198 NKLKVIGVEATKKLAEFFSFPLDKAKEVSSNLKRGFMSGKLERKAIEIAASAQAHLERLI 257
+++ A +V+ +R SG+ E +A +A +AQ LER +
Sbjct: 227 GGVQI------------------SASKVNHLFERLVESGEFEDRAA-LAYAAQETLERAL 267
Query: 258 EEMGLELRKYN--LPIAYAGGVAQNVKANA-VLRGI-FGDIWVFPAMDDAGLAFGAAAYI 313
+L + + AGGV N AN +LR F ++V PA D G++ G A Y
Sbjct: 268 LHCARDLHRRTGLTDLCIAGGVGLNSVANGRILRETPFERVFVVPAAGDNGISLGCAYYG 327
Query: 314 KAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVD-VPSFVSDSLVDGKI 372
+++ P L+ +LGP Y + V+ L E D +P V+ L +GKI
Sbjct: 328 LHELEGRAPSELP-ALDTAYLGPDYPAERVDAALAGSGFTVETPDDLPGRVAGLLAEGKI 386
Query: 373 VGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALK-RDVFQPFAPSILEEDFPKYIE 431
+G F G E+GPRALGHRSILA P V++ LN +K R+ F+P+AP + E+ Y +
Sbjct: 387 IGWFDGRSEFGPRALGHRSILAAPFPASVRDHLNDNVKHREWFRPYAPIVREDRAADYFD 446
Query: 432 DLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVPEWLG-EYYEIIRKFKEKSGV 490
+ +P+ FM + + + + + PA HVDGT R Q++ + YE++ +F+ +G
Sbjct: 447 LV--QPSPFMLVVARVTRQ--DAIPAATHVDGTARLQTLNAAQNPKVYELLGRFEALTGC 502
Query: 491 GAVLNTSFNMHGEPIVCSPRDAIRTAKIANLDVLVLED 528
+LNTSFN+ G+PIV +P DA+ LD LV+ D
Sbjct: 503 AVLLNTSFNVAGQPIVETPEDAVEAFAGMRLDHLVVGD 540
>gb|AAG02370.1|AF210249_29 (AF210249) carbamyltransferase BlmD [Streptomyces verticillus]
Length = 545
Score = 168 bits (421), Expect = 1e-40
Identities = 165/573 (28%), Positives = 261/573 (44%), Gaps = 90/573 (15%)
Query: 3 ILGVHDGHDAGAVLFKGDKIYA-VNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVDAI 61
IL V+ HD VL + +I V ER +R+KK+ G + ++L+ ++D +
Sbjct: 11 ILSVNFNHDGSGVLLREGRIAGYVTTERRSRLKKHPGLREEDLDELLDQAGADLSDIDHV 70
Query: 62 AVAGLFRRRNRLLELENELKSVFGSEFRKK----------------------VIFVEHHL 99
+ L ++ + GS+ ++ + +HHL
Sbjct: 71 MLCNLHTMDTP------DIPRLHGSDLKETWLAFWVNQRNDEVSLRGRRIPCTVNPDHHL 124
Query: 100 AHASSAYYTSGLSDAIVLTIDAAGDGLSSTVSIARKGEMF----RIAQSTYIDSLGDFYA 155
HA++AYYTSG A+ + ID G + A KG R + + ++G Y
Sbjct: 125 IHAATAYYTSGYDSAMAVAIDPTG-----CRAFAGKGSRLYPLRRDLDAWFNANIG--YC 177
Query: 156 SVTELLGFKPMRHEGKVMSLAAYGKPSYELSAVIEVSGLSFENKLKVIGVEATKKLAEFF 215
V +L+ + GKVM LA YG+P+ + +G E V A LA+
Sbjct: 178 YVADLMFGSSIVGAGKVMGLAPYGRPA-------DGAGPDEEPPETVRDFAALVALADRH 230
Query: 216 SFPLD-KAKEVSSNLKRGFMSGKLERKAIEIAASAQAHLERLIEEMGLELRKYNLPIAYA 274
+D +++++ L G LER+ + A L L G+ I +
Sbjct: 231 PRLVDVDGRKLNATLAHYIQLG-LERQLTAVFAE----LAPLCARNGIAP-----DICLS 280
Query: 275 GGVAQNVKAN--AVLRGIFGDIWVFPAMDDAGLAFGAAAYIKAQMDILFGKWKPF----K 328
GG A N A A F + + PA D G A GAA + W +
Sbjct: 281 GGTALNAIATQLAFESTGFERMHLHPACGDDGTAIGAALW----------HWHHVLGHPR 330
Query: 329 LEHVFLGPYYSL-DFVEDVLKREKLEY-------EEVDVPSFVSDSLVDGKIVGLFQGEL 380
L H YS+ ++ E ++R ++ E D + ++ + G ++G + G
Sbjct: 331 LHHTNADLMYSVREYPEHTVRRAVRDHAADLVVEETGDYVARAAELVAGGAVIGWYDGAG 390
Query: 381 EYGPRALGHRSILADPRDEKVKEKLNLALK-RDVFQPFAPSILEEDFPKYIEDLTGEPNR 439
E GPRALGHRSI+ADPRD ++++LN +K R+ F+PFAPS+L+E ++ L+ P
Sbjct: 391 EVGPRALGHRSIVADPRDPAMRDRLNSQVKFREHFRPFAPSVLKEHAAEWF-GLSDSP-- 447
Query: 440 FMTMSYKASDEFVEVAPAVVHVDGTTRPQSVP-EWLGEYYEIIRKFKEKSGVGAVLNTSF 498
FM +A+ PA+ HVDGT+R QSV + ++++I FK+++G+ VLNTS
Sbjct: 448 FM---LRATPVLKPGVPAITHVDGTSRIQSVTRQDTPAFHDLIHAFKDRTGIPMVLNTSL 504
Query: 499 NMHGEPIVCSPRDAIRTAKIANLDVLVLEDFAV 531
N GEPI +P DA+RT + LD LVL V
Sbjct: 505 NTKGEPIAETPEDALRTLLGSRLDHLVLPGLIV 537
>gi|10957542 nodulation protein-related protein [Deinococcus radiodurans]
>gi|7473225|pir||G75638 nodulation protein-related
protein - Deinococcus radiodurans (strain R1)
>gi|6460971|gb|AAF12674.1|AE001827_12 (AE001827)
nodulation protein-related protein [Deinococcus
radiodurans]
Length = 703
Score = 164 bits (411), Expect = 2e-39
Identities = 171/574 (29%), Positives = 262/574 (44%), Gaps = 70/574 (12%)
Query: 3 ILGVH-DGHDAGAVLFK-GDKIYAVNEERLNRIKKYRGF-----------PRLSVRKVLE 49
+LGV HD A L + G+ + AV EERL+R KK GF P ++ VL
Sbjct: 7 VLGVSMSNHDRSACLLRDGEIVAAVAEERLDRRKKSEGFYEQHLGSAVLPPYRAITAVLH 66
Query: 50 LGEVSPEEVDAIAVAGLFRRRNRLLELENELKSVFGSEFRK--KVIFVEHHLAHASSAYY 107
++ ++D + +L ++L + F K ++ HH+AHA SA++
Sbjct: 67 EAGLTVGDIDRVVCG------RSILPCRDDLLNQFPFPPEKVVEIPVPGHHIAHACSAFF 120
Query: 108 TSGLSDAIVLTIDAAGDGLSS------TVSIARKGEMFRIAQSTYIDS----LGDFYASV 157
TS +A VL +D G L T A ++ I Q Y DS LG F +
Sbjct: 121 TSPFENAAVLVLDEQGHRLEDDRFERMTWYTAHGTQVVPIRQF-YGDSETLSLGMFMDAF 179
Query: 158 TELLGFKPMRHE--GKVMSLAAYGKPSYELSAVIEVSGLSFENKLKVIGVEATKKLAE-- 213
G + GK+M LAA G+ + +++ V +A +L+E
Sbjct: 180 ATFTGLSEAKQPSAGKLMGLAAVGQERQQWPSLVTT----------VDDGDAYVRLSELD 229
Query: 214 -FFSFPLDKAKEVSSNLKRGF--MSGKL------ERKAIEIAASAQAHLERLIEEMGLEL 264
FF+ L + E + R + K A ++A AQA LE + + L
Sbjct: 230 SFFASVLPRRVEFEGGIVRQLDDLLAKYWPVHWSSNLAADLAFKAQAELEGALLHINRHL 289
Query: 265 RKY--NLPIAYAGGVAQNVKANAVLR-GIFGDIWVFPAMDDAGLAFGAAAYIKAQMDILF 321
+ + +AYAGGVA N ANA L + D++V PA D G A G A Y + L
Sbjct: 290 KAQVGSENLAYAGGVALNCTANAKLSLAGWRDVFVHPAATDDGNAVGLAYYGQRS---LA 346
Query: 322 GKWKPFKLEHVFLGPYYSLDFVEDVLKREKLE--YEEVDVPSFVSDSLVDGKIVGLFQGE 379
GK + +L + GP YS VE+ + R L E D+ ++ L G+ + F G
Sbjct: 347 GKHRRPELFNPMTGPRYSQKAVEEAVHRFGLGEWLERTDMSDEAAERLSRGETLCWFLGR 406
Query: 380 LEYGPRALGHRSILADPRDEKVKEKLNLALK-RDVFQPFAPSILEEDFPKYIEDLTGEPN 438
E+GPRALG RSI+ADP +K +N +K R+ F+PF S + ++ P+
Sbjct: 407 SEWGPRALGGRSIVADPTVPGIKALINSRIKHREPFRPFGISGTPRGVEQALDVGAALPS 466
Query: 439 R--FMTMSYKASDEFVEVAPAVVHVDGTTRPQSVPE-WLGEYYEIIRKFKEKSGVGAVLN 495
+M +A D + + H DG+ R Q V W E++ +I F +SGV ++N
Sbjct: 467 LAPYMLAVARARDTRLS---QLQHQDGSIRYQIVQRAWQPEWFGMIEAFGRRSGVECIVN 523
Query: 496 TSFNMHGEPIVCSPRDAIRTAKIANLDVLVLEDF 529
TSFN+ GEP+V +P DA+R ++ L++ F
Sbjct: 524 TSFNVLGEPLVETPSDAVRQFVLSGAQALLINGF 557
>gb|AAC72033.1| (AF047554) putative carbamoyl transferase [Myxococcus xanthus]
Length = 510
Score = 141 bits (353), Expect = 1e-32
Identities = 149/522 (28%), Positives = 225/522 (42%), Gaps = 59/522 (11%)
Query: 1 MIILGVHDG-HDAGAVLFKGDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEVD 59
M +LGV+ G HD+ L ++ ERL IK +R VR++ E V+ +D
Sbjct: 1 MNLLGVYIGLHDSNVALSVDGRVRYAKSERLTGIKHHRSALSF-VREMCERWGVT--RLD 57
Query: 60 AIAVAGLFRRRNRLLELENELKSVFG-SEFRKKVIF-VEHHLAHASSAYYTSGLSDA-IV 116
IA + R +L K V +E + V+HH AH S + + ++ +
Sbjct: 58 GIAFSDGDRNGLGACKLGELWKKVSPVAELGSAPTYCVDHHYAHILSTWPVADTAELELG 117
Query: 117 LTIDAAGDGLSSTVSIARKGEMF-RIAQSTYIDSLGDFYASVTELLGFKPMRHE-----G 170
ID GD + IAR G + S G + EL+ G
Sbjct: 118 FAIDGRGDNEARKTVIARPGARNPELVHHNATRSFGRLLERIGELMKLSATPGNESDLAG 177
Query: 171 KVMSLAAYGKPSYELSAVIEVSGLS-----FENKLKVIGVEATKKLAEFFSFPLDKAKEV 225
KVM AYG+ + ++V L F +K+ G + +FF F ++
Sbjct: 178 KVMGAQAYGEVDQDFVRSVDVEALGERLYDFTDKVPWRG-RVPIETPDFFQFDNPSFRDW 236
Query: 226 SSNLKRGFMSGKLERKAIEIAASAQAHLERLIEEMGLELRKYNLPIAYAGGVAQNVKANA 285
S + +AA QAH R ++ IAYAGG AQNV N
Sbjct: 237 LSTVHA------------LLAAHTQAHFARFARP--------DMAIAYAGGCAQNVVINQ 276
Query: 286 VLRGIFGDIWVFPAMDDAGLAFGAAAYIKAQMDILFGKWKPFKLEHVFLGPYYSLDFVED 345
L + + V P D GL+ G ++ Q+ + + F PY+ D ED
Sbjct: 277 ELFLRYPRLVVPPHGYDGGLSLGCLELLRIQLGLPRFSTEGF--------PYWQEDDCED 328
Query: 346 VLKREKLEYEEVDVPSFVSDSLVDGKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKL 405
E + V++ L GKIVG FQG E GPRALG+RSI DPR K++L
Sbjct: 329 A-PTESTIAQAVEL-------LAQGKIVGWFQGRGEVGPRALGNRSIFMDPRQHDGKDRL 380
Query: 406 NLALK-RDVFQPFAPSILEEDFPKYIEDLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGT 464
N +K R+ ++P+ ++L E P++ + E +R+M S E PA+VH DGT
Sbjct: 381 NFRVKHRETWRPYGATVLLERTPEWFD--LAEESRYMLRSVPTRPERQREIPAIVHQDGT 438
Query: 465 TRPQSV-PEWLGEYYEIIRKFKEKSGVGAVLNTSFNMHGEPI 505
R Q+V + ++ +F++ +G+ +LNTS N G PI
Sbjct: 439 CRVQTVGRDAPTSARRLVERFQQHTGLPMLLNTSLNAGGSPI 480
>sp|Q45269|NOLO_BRAJA NODULATION PROTEIN NOLO >gi|1073139|pir||C49300 nodulation factor
production protein NolO - Bradyrhizobium japonicum
>gi|404788|gb|AAB58811.1| (L22756) GTG start codon
[Bradyrhizobium japonicum]
Length = 358
Score = 140 bits (350), Expect = 3e-32
Identities = 117/377 (31%), Positives = 177/377 (46%), Gaps = 32/377 (8%)
Query: 104 SAYYTSGLSDAIVLTIDAAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYASVTELLGF 163
SA+ SG ++V ID GD LS +++ + ++ +SLG FY LG
Sbjct: 2 SAFAMSGFEQSLVFAIDGGGDFLSGLMAVGSGTVIAQLVSFPEHNSLGLFYLETIRYLGC 61
Query: 164 KPMRHEGKVMSLAAYGKPSYELSAVIEVSGLSFENKLKVIGVEATKKLAEFFSFPLDK-A 222
M E KVM LA YG P + L +V LD+
Sbjct: 62 G-MFDEYKVMGLAPYGDPDRYRELFAQFYELLDSGGYRV---------------HLDRIG 105
Query: 223 KEVSSNLKRGFMSGKLERKAIEIAASAQAHLERLIEEMGLELRKYN--LPIAYAGGVAQN 280
+ N++ ++ +++AS Q LER++ RK + AGGVA N
Sbjct: 106 PALLRNIQVRRKGMPFTQQHRDVSASLQEALERIVFHTLRHHRKATGMTRLCLAGGVAHN 165
Query: 281 VKANAVL--RGIFGDIWVFPAMDDAGLAFGAAAYIKAQMDILFGKWKPF-KLEHVFLGPY 337
N L G+F DI+V PA DAG A GAA + +++ G+ P +L V+ GP
Sbjct: 166 CTLNGKLLYSGLFDDIFVQPAAHDAGCALGAALMVSSEL----GRPAPRERLPDVYWGPD 221
Query: 338 YSLDFVEDVLKREKLEYEEV----DVPSFVSDSLVDGKIVGLFQGELEYGPRALGHRSIL 393
+ ++ + ++ D+ S +D + +G ++G QG E+GPRALG+RSIL
Sbjct: 222 LGNEQATELELNAWSGHLDIQRSDDIASSAADWMANGAVIGWVQGRSEFGPRALGNRSIL 281
Query: 394 ADPRDEKVKEKLNLAL-KRDVFQPFAPSILEEDFPKYIEDLTGEPN-RFMTMSYKASDEF 451
ADPR + K+++N + KR+ ++PFAPS LEED ++ E G FM + +
Sbjct: 282 ADPRPAENKDRINAVVKKRETYRPFAPSALEEDASEFFELPDGTRQLPFMNFVVRVREAK 341
Query: 452 VEVAPAVVHVDGTTRPQ 468
V A+ HVDGT R Q
Sbjct: 342 GNVLGAITHVDGTARLQ 358
>sp|P26027|NODU_BRAJA NODULATION PROTEIN U >gi|281686|pir||S27495 nodU protein -
Bradyrhizobium japonicum >gi|152116|gb|AAA26228.1|
(J03685) nodU gene product [Bradyrhizobium japonicum]
Length = 569
Score = 118 bits (293), Expect = 2e-25
Identities = 150/555 (27%), Positives = 238/555 (42%), Gaps = 82/555 (14%)
Query: 1 MIILGVHDGHDAG-AVLFKGDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGE--VSPEE 57
M I G+ HD AV+ G +++ V +E+ +Y+ L V L E ++P +
Sbjct: 1 MRICGIKLTHDGAIAVVEDGRRLFCVEQEKRGNGPRYQSVDNLDA-VVFALAEHGLNPRD 59
Query: 58 VDAIAVAGLFRRRNRLLEL-------------------ENELKSVFG-------SEFRKK 91
+D + G +L E L SV G EF K
Sbjct: 60 IDQFVIDGWDGENESQFQLLSGAVPVALKGAPYVERHAEGLLDSVDGYGLLLGGEEFPYK 119
Query: 92 VIFVEHHLAHASSAYYTSGLSDAIVLTIDAAGDGLSSTVSIARKGEMFRIAQSTYIDSLG 151
H H +SAY TS + A + DG + + R+ S + +G
Sbjct: 120 SY--PHVTGHVASAYSTSPFASAGKPALCLVWDGCIFPRLYYVEPQGARLIGSLF-PMIG 176
Query: 152 DFYASVTELLGFKPMRHEGKVM-SLAAYGKPSYELSAVIEVSGLSFENKLKVI-GVEATK 209
YA+ L F P R + L GK L A IE+ + E+ ++V G+ T+
Sbjct: 177 HAYAAAG--LHFGPYRQPNRSSWDLGIAGK----LMAYIELGSVD-ESIVEVFQGLYETR 229
Query: 210 KLAEFFSFPLDKAKEVSSNLKRG----------FMSGKLE---RKAIEIAASAQAHLERL 256
A+ ++A+ N+ F S L ++A ++ AS LERL
Sbjct: 230 SAAD-----TEQARRYRENINNAEASLAVIHDFFESSALRLKAKRAEDVLASFHVFLERL 284
Query: 257 -IEEMGLELRKYN-LP----IAYAGGVAQNVKANAVLR--GIFGDIWVFPAMDDAGLAFG 308
++E+ + L +++ LP + AGG N+K N+ LR G+F D+WV P +D+G A G
Sbjct: 285 LVKEIAMVLLRHSSLPGARNLCIAGGCGLNIKWNSALRATGLFDDVWVPPFPNDSGSAIG 344
Query: 309 AAAYIKAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVPSFVSDSLV 368
AA A D ++P + V+ GP V E +P S L
Sbjct: 345 AACGAMAAQD----GFEPLEWS-VYSGPALQESEVPP-----DWEAAPCSLPELAS-ILA 393
Query: 369 DGKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPSILEEDFPK 428
D K V G GPRALG RSILA P ++K+ LN +R+ F+P P LE+ P+
Sbjct: 394 DNKPVIFLSGCAGLGPRALGGRSILAAPTSPEMKDHLNDIKRREHFRPVVPICLEDRAPE 453
Query: 429 YIEDLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVP-EWLGEYYEIIRKFKEK 487
G P+ +M ++ + + PAVVH+DG+ R Q++ + ++ +F++
Sbjct: 454 IFS--PGTPDPYMLFDHQTRANWRDKIPAVVHLDGSARLQTISRNSPHKIAALLIEFEQL 511
Query: 488 SGVGAVLNTSFNMHG 502
+G+ + TS N+HG
Sbjct: 512 TGIPLLCTTSANLHG 526
>sp|Q07759|NODU_AZOCA NODULATION PROTEIN U >gi|2120375|pir||PQ0041 nodulation protein
nodU - Azorhizobium caulinodans
>gi|310296|gb|AAB51166.1| (L18897) carbamoyltransferase
[Azorhizobium caulinodans]
Length = 560
Score = 116 bits (288), Expect = 6e-25
Identities = 147/573 (25%), Positives = 236/573 (40%), Gaps = 82/573 (14%)
Query: 10 HDAGAVLFKG-DKIYAVNEERLNRIKKYRGFPRLS-VRKVLELGEVSPEEVDAIAVAGLF 67
HD G + G D + + E+L ++YR + L P ++D + G
Sbjct: 10 HDGGVAVLDGRDLVACIEMEKLTNNERYRRIEHTDEIALALHRSGFQPSDIDEYIIDGWD 69
Query: 68 RRRNRLLEL---------------------ENELKSVFGSEFRKKVIFVE---HHLAHAS 103
+ +EL NE FG + + H + H +
Sbjct: 70 GEVDAWVELLGAAGRVQLKVAPYVEKEPDRANEFTQGFGLNILGRDYTYKSAPHVMGHIA 129
Query: 104 SAYYTSGLS----DAIVLTIDAAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYASVTE 159
S Y TS + A+ L D G I+ G F +T +G YA
Sbjct: 130 SVYCTSPFAIFKQKALCLVWD--GSIWPRLYEISDGGIRFI---NTLFPMIGHAYACAGH 184
Query: 160 LLGFKPMRHE----------GKVMSLAAYGKPSYELSAVIEVSGLSFENKLKVIGVEAT- 208
G P ++ GK+MS + G ++A I+ S ++N L A
Sbjct: 185 HFG--PYKNADRTSWKLDLAGKLMSYMSTGTVDSRITAAIQTS---YQNNLAGHSPNALS 239
Query: 209 -KKLAEFFSFPLDKAKEVSSNLKRGFMSGKLERKAIEIAASAQAHLERL-IEEMGLEL-- 264
++++ S L + + ++G E +I A+ +ERL IE + EL
Sbjct: 240 YRRMSANTSVALIQTHRFFEEIGV-LVAGAPEH---DILATFHYFVERLLIETLRHELAR 295
Query: 265 --RKYNLPIAYAGGVAQNVKANAVLR--GIFGDIWVFPAMDDAGLAFGAAAYIKAQMDIL 320
R + + +GG N+K N+ LR G+F D+WV P +D+G A GAA D L
Sbjct: 296 AGRNMSRNLCISGGCGLNIKWNSALRSSGLFRDVWVSPFPNDSGSAIGAACSALVANDGL 355
Query: 321 FG-KWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVPSFVSDSLVDGKIVGLFQGE 379
W VF GP+ + + E E+ + L DG+ V G
Sbjct: 356 VPINWS------VFSGPHLVKSTPDANWRGSACELSEL------AALLADGEPVVFLAGR 403
Query: 380 LEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPSILEEDFPKYIEDLTGEPNR 439
E GPRALG RSILA D +K++LN A +R+ F+P AP LE+ P+ E G +R
Sbjct: 404 AELGPRALGARSILAPASDRSMKDRLNAAKQREYFRPVAPICLEDRAPEIFE--PGSNDR 461
Query: 440 FMTMSYKASDEFVEVAPAVVHVDGTTRPQSVPEWLGE-YYEIIRKFKEKSGVGAVLNTSF 498
+M +K + + + PA++H+DG+ R Q++ +++ ++++ + + + NTS
Sbjct: 462 YMLYDHKVREGWRDRVPAIMHLDGSARVQTIARTSAHPVAKLLVEYEKLTNIPLLCNTSA 521
Query: 499 NMHGE---PIVCSPRDAIRTAKIANLDVLVLED 528
N G P V S R AK+ +VL D
Sbjct: 522 NALGRGFFPDVASACTWGRIAKVWAENVLWSND 554
>sp|P31957|NODU_RHISN NODULATION PROTEIN U >gi|2120826|pir||S58226 nodU protein -
Rhizobium sp >gi|929841|emb|CAA62004.1| (X89965)
involved in 6-O-carbamoylation of Nod-factors [Rhizobium
sp.] >gi|2182537|gb|AAB91782.1| (AE000086) NodU
[Rhizobium sp. NGR234]
Length = 558
Score = 114 bits (283), Expect = 2e-24
Identities = 143/573 (24%), Positives = 231/573 (39%), Gaps = 81/573 (14%)
Query: 1 MIILGVHDGHDAG-AVLFKGDKIYAVNEERLNRIKKYRGFPRL-SVRKVLELGEVSPEEV 58
M + G+ HD AV+ G ++ +E+ N +Y+ L +V L V+ +V
Sbjct: 1 MRVCGIKLTHDGAIAVVEDGRLVFCTEQEKRNNNSRYQEINNLDAVVAALAENGVNARDV 60
Query: 59 DAIAVAGLFRRRNRLLELENELKSVFGSE--FRKKVIFVEHHL----------------- 99
D + G E E++ K + G + +VE H
Sbjct: 61 DQFVIDGWDG------EAESQFKVLSGETPVILRGAPYVERHAEGLLDWIGGSGLTLGDR 114
Query: 100 -----------AHASSAYYTSGLSDAIVLTIDAAGDGLSSTVSIARKGEMFRIAQSTYID 148
+H +SAY TS + + + DG +G+ +S +
Sbjct: 115 VFSYRSYPHVTSHVASAYCTSPFAKSGDPALCLVWDGCIFPRLYHVEGKRASFVKSLF-P 173
Query: 149 SLGDFYASVTELLG-FKPMRH-------EGKVMSLAAYGKPSYELSAVIEVSGLSFENKL 200
G YA+ G +K GK+M+ A G + AV + KL
Sbjct: 174 VTGQAYAAAGHYFGPYKQTSRGGWDLGVAGKLMAFIALGSVHERIVAVFQ--------KL 225
Query: 201 KVIGVEATKKLAEFFSFPLDKAKEVSSNLKRGFMSGKLERKAI---EIAASAQAHLERL- 256
LA F ++ ++ + + F + L+ A ++ AS+ LERL
Sbjct: 226 YQEHFAGDTALACAFRANINNSESSLAAVHDFFAASALQLGAEAPEDVLASSHFFLERLL 285
Query: 257 IEEMGLELRKYNLP----IAYAGGVAQNVKANAVLR--GIFGDIWVFPAMDDAGLAFGAA 310
++EM L+ + LP + AGG N+K N+ LR G+F +WV P +D+G A GAA
Sbjct: 286 VDEMANALQHHPLPGARNLCIAGGCGLNIKWNSALRETGLFDSVWVPPFPNDSGSAIGAA 345
Query: 311 AY-IKAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVPSFVSDSLVD 369
I AQ + W V+ GP V EV + L
Sbjct: 346 CCEIVAQQGFVPLDWS------VYSGPSLQAGKVPAGWHASPCSISEV------AAILAS 393
Query: 370 GKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPSILEEDFPKY 429
K V G E GPRALG RSILA ++K+ LN R+ F+P AP LE+ P
Sbjct: 394 NKPVVFLSGRSELGPRALGGRSILAAATSPEMKDHLNEIKFREHFRPVAPICLEDRAPDI 453
Query: 430 IEDLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVP-EWLGEYYEIIRKFKEKS 488
G P+ +M ++ + + PAVVH+DG+ R Q++ + E++ ++++ +
Sbjct: 454 FS--PGTPDPYMLFDHQTKMPWQDKVPAVVHLDGSARLQTISRNSQHKVAEVLVEYEKLT 511
Query: 489 GVGAVLNTSFNMHGEPIVCSPRDAIRTAKIANL 521
G+ + NTS N HG S A ++ ++
Sbjct: 512 GIPLLCNTSANYHGRGFFPSAAAACEWGRVEHV 544
>emb|CAB40567.1| (AJ132913) putative carbamoyltransferase [Rhizobium galegae]
Length = 496
Score = 113 bits (280), Expect = 5e-24
Identities = 135/518 (26%), Positives = 215/518 (41%), Gaps = 72/518 (13%)
Query: 1 MIILGVHDGHDAGAVLFK-GDKIYAVNEERLNRIKKYRGFPRLSVRKVLELGE--VSPEE 57
M I G+ HD G L + G I+++ +E+L +++ L V LGE + P
Sbjct: 1 MRICGIKLTHDGGVALLEDGRLIFSIEQEKLRNNPRFQHINDLDA-VVAALGEYGLDPTH 59
Query: 58 VDAIAVAGLFRRRNRLLELENE-------------------LKSVFGSEFRKKVI----- 93
VD + G E+ ++ L + GS I
Sbjct: 60 VDRFVIDGWDGETVSEFEVLSDGQPVRLAGAPYVERGATSPLAAYHGSGLMLGGINFAYE 119
Query: 94 FVEHHLAHASSAYYTSGLSDAIVLTIDAAGDG--LSSTVSIARKGEMFRIAQSTYIDSLG 151
H H +SAY TS + A DG + +G F +G
Sbjct: 120 SYPHVTGHVASAYCTSPFAAAKEPAFCLVWDGCIFPRLYYVEPRGIHFI---KCLFPIIG 176
Query: 152 DFYASVTELLG-FKPMRHEG-------KVMSLAAYGKPSYELSAVIEVSGLSFENKLKVI 203
YA + G ++ + +G K+M+ A G E +++V +E +L
Sbjct: 177 HTYAIAGQHFGPYRQTKRDGWNLDIAGKMMAYIALGTAREE---ILKVFRELYEERLAGA 233
Query: 204 GVEAT--KKLAEFFSFPLDKAKEVSSNLKRGFMSGKLERKAIEIAASAQAHLERL-IEEM 260
G A ++ ++ L+ + R + K E +I AS LERL +EE+
Sbjct: 234 GAVACSYRQNSQSEDSLLEAVHDFFDESARRLGAAKPE----DILASFHIFLERLLVEEV 289
Query: 261 GLELRKYNLPI----AYAGGVAQNVKANAVLR--GIFGDIWVFPAMDDAGLAFGAAAY-I 313
LR ++P+ AGG N+K N+ LR G+F +WV P +D+G A GAA +
Sbjct: 290 TAALRDLSMPLPRNLCIAGGCGLNIKWNSALRADGLFDAVWVPPFPNDSGSAIGAACCAL 349
Query: 314 KAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVPSFVSDSLVDGKIV 373
A+ + +W V+ GP +L + D + E+ + L D K V
Sbjct: 350 AAEEGFVAIEWS------VYRGPNITLGDIPDGWQSAPCTLTEL------AQLLADDKPV 397
Query: 374 GLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPSILEEDFPKYIEDL 433
G E GPRALG RSILA ++ K+ LN R+ F+P AP LE+ P +
Sbjct: 398 VFLTGRAELGPRALGGRSILAAATSKEAKDYLNQVKLREYFRPVAPICLEDRAPGIFD-- 455
Query: 434 TGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVP 471
G P+ +M ++ +++ PAV+H+D T R Q++P
Sbjct: 456 PGTPDPYMLFDHRTRSAWIDQIPAVIHIDETARLQTIP 493
>gb|AAC80569.1| (AF105431) NodU [Bradyrhizobium sp. SNU001]
Length = 569
Score = 112 bits (278), Expect = 9e-24
Identities = 118/421 (28%), Positives = 192/421 (45%), Gaps = 32/421 (7%)
Query: 97 HHLAHASSAYYTSGLSDAIVLTIDAAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDFYAS 156
H H +SAY TS + A + DG + + R+ S + +G YA+
Sbjct: 123 HVTGHVASAYSTSPFASAGKPALCLVWDGCIFPRLYYVEPQGARLIGSLF-PMIGHAYAA 181
Query: 157 VTELLGFKPMRHEGKV---MSLAAYGKPSYELSAVIEVSGLSFENKLKVIGVEATKKLAE 213
L F P R + + +A EL +V E F+ + T++ A
Sbjct: 182 AG--LHFGPYRQPNRSSWDLGIAGKLMAYIELGSVDERIVEVFQELYETRSAADTEQ-AR 238
Query: 214 FFSFPLDKAKEVSSNLKRGFMSGKLE---RKAIEIAASAQAHLERL-IEEMGLELRKYN- 268
+ ++ A+ + + F S L ++A ++ AS LERL ++E+ + L +++
Sbjct: 239 RYRENINNAERSLAVIHDFFESSALRLKAKRAEDVLASFHVFLERLLVKEIAMVLLRHSS 298
Query: 269 LP----IAYAGGVAQNVKANAVLR--GIFGDIWVFPAMDDAGLAFGAAAYIKAQMDILFG 322
LP + AGG N+K N+ LR G+F D+WV P +D+G A GAA A D
Sbjct: 299 LPGARNLCIAGGCGLNIKWNSALRDAGLFDDVWVPPFPNDSGSAIGAACGAMAAQD---- 354
Query: 323 KWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVPSFVSDSLVDGKIVGLFQGELEY 382
++P + V+ GP V E +P S L D K V G
Sbjct: 355 GFEPLEWS-VYSGPALQESEVPP-----DWEAAPCSLPELAS-ILADNKPVIFLSGCAGL 407
Query: 383 GPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPSILEEDFPKYIEDLTGEPNRFMT 442
GPRALG RSILA P ++K+ LN +R+ F+P P LE+ P+ G P+ +M
Sbjct: 408 GPRALGGRSILAAPTSPEMKDHLNDIKRREHFRPVVPICLEDRAPEIFS--PGTPDPYML 465
Query: 443 MSYKASDEFVEVAPAVVHVDGTTRPQSVP-EWLGEYYEIIRKFKEKSGVGAVLNTSFNMH 501
++ + + PAVVH+DG+ R Q++ + ++ +F++ +G+ + TS N+H
Sbjct: 466 FDHQTRANWRDKLPAVVHLDGSARLQTISRNSPHKIAALLIEFEQLTGIPLLCTTSANLH 525
Query: 502 G 502
G
Sbjct: 526 G 526
>sp|Q53515|NODU_RHITR NODULATION PROTEIN U >gi|998363|gb|AAB34511.1| (S77171) NodU
[Rhizobium tropici, CIAT899, plasmid pSym, Peptide
Plasmid, 575 aa]
Length = 575
Score = 111 bits (275), Expect = 2e-23
Identities = 142/552 (25%), Positives = 231/552 (41%), Gaps = 77/552 (13%)
Query: 1 MIILGVHDGHDAGAVLFK-GDKIYAVNEERLNRIKKYRGFPRLS--VRKVLELGEVSPEE 57
M I G+ HD L + G ++ + +E+ + ++Y+ L V + E G ++P +
Sbjct: 1 MRICGIKLTHDGAIALIEDGRLVFCIEQEKQDNNRRYQTIDNLDAIVTALAEHG-LNPSD 59
Query: 58 VDAIAVAGL---FRRRNRLLE----------------LENELKSVFGSEF--RKKVIFVE 96
VD + G R ++L + L S+ GS +V+ +
Sbjct: 60 VDQFVIDGWDGEIESRFQVLSGAAPVTLTGAPYVERHPDGLLDSLDGSGLILDDRVLSYK 119
Query: 97 ---HHLAHASSAYYTSGLSDAIVLTIDAAGDGLSSTVSIARKGEMFRIAQSTYIDSLGDF 153
H H +SAY TS + A G G R +S + +G
Sbjct: 120 SYPHVTGHVASAYCTSPFAKAGEAAFCLVWGGCIFPRLYHVDGHGARFLESLF-PMIGQA 178
Query: 154 YASVTELLG-FKPMRHEGKVMSLAAYGKPSYELSAVIEVSGLSFENKLKVIGVEATKKLA 212
YA+ G +K G + +A LS++ E FE +
Sbjct: 179 YAAAGHYFGPYKQPSRAGWDLGVAGKLMAYIALSSIDEDIVAVFEELYE----------- 227
Query: 213 EFFSFPLDKAKEVSSNLKRGFMS------------GKLERKAIE-IAASAQAHLERL-IE 258
E FS ++A +N+ S +LE KA E + AS + LE L +
Sbjct: 228 EHFSGDAERACRYRANINDAESSLIAVHDFFDASVVRLEDKAPENVLASFHSFLELLLVR 287
Query: 259 EMGLELRKYNLP----IAYAGGVAQNVKANAVLR--GIFGDIWVFPAMDDAGLAFGAA-A 311
EM L +++++LP + AGG N+K N+ LR G+F +WV P +D+G A GAA +
Sbjct: 288 EMALAMQRHSLPGPRNLCIAGGCGLNIKWNSALRETGLFDAVWVPPFPNDSGSAIGAACS 347
Query: 312 YIKAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVPSFVSDSLVDGK 371
+ A + +W V+ GP + E+ + L K
Sbjct: 348 AMAAHEGFVPLEWS------VYSGPALKNGDAPPGWEAAPCSILEL------ATILASNK 395
Query: 372 IVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPSILEEDFPKYIE 431
V G E GPRALG RSILA ++K+ LN R+ F+P AP LE+ P
Sbjct: 396 PVVFLAGRAELGPRALGGRSILAAATSPQMKDYLNEVKFREHFRPVAPICLEDLAPDIFS 455
Query: 432 DLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVPEWLGE-YYEIIRKFKEKSGV 490
G P+ +M ++ E+ + PAVVH+DG+ R Q++ E++ ++++ +G+
Sbjct: 456 --PGTPDPYMLFDHQTRPEWKDKIPAVVHLDGSARLQTISRSSEHAVTELLIEYEKLTGI 513
Query: 491 GAVLNTSFNMHG 502
+ NTS N+HG
Sbjct: 514 PLLCNTSANLHG 525
>pir||T34834 probable transferase - Streptomyces coelicolor (fragment)
>gi|5051863|emb|CAB36588.2| (AL035478) putative
transferase [Streptomyces coelicolor A3(2)]
Length = 187
Score = 111 bits (274), Expect = 3e-23
Identities = 70/183 (38%), Positives = 102/183 (55%), Gaps = 6/183 (3%)
Query: 352 LEYEEVD-VPSFVSDSLVDGKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALK 410
+ YEE D + V++ L IV FQG E+GPRALGHRS+LA P + E+LN
Sbjct: 1 IPYEEPDDIAETVAEELARDGIVAWFQGRSEFGPRALGHRSLLAHPGRSENLERLNHVKG 60
Query: 411 RDVFQPFAPSILEEDFPKYIEDLTGE-PNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQS 469
R+ F+P AP +L + + TG P+ +M + + + + PAVVHVDGT R Q+
Sbjct: 61 REEFRPVAPMVLA---GRAADIFTGPVPSPYMLFVHDVAPAWRDRVPAVVHVDGTARIQT 117
Query: 470 VPEWLGEYY-EIIRKFKEKSGVGAVLNTSFNMHGEPIVCSPRDAIRTAKIANLDVLVLED 528
V E ++ F+ ++G+ V+NTS N G P+V PRDA+ A +D+L +
Sbjct: 118 VEERREPLVARMLAAFERRTGLPVVVNTSLNTAGRPMVDDPRDALECFGSAPVDLLAIGP 177
Query: 529 FAV 531
FAV
Sbjct: 178 FAV 180
>sp|Q51080|CMCH_NOCLA 3'-HYDROXYMETHYLCEPHEM-O-CARBAMOYLTRANSFERASE
(3'-HYDROXYMETHYLCEPHEM-O-CASE) (CCT)
>gi|481950|pir||S40256 hypothetical protein 10 -
Streptomyces lactamdurans >gi|438200|emb|CAA79798.1|
(Z21682) 3'-hydroxymethylcephem-O- carbamoyltransferase
[Streptomyces lactamdurans]
Length = 520
Score = 103 bits (255), Expect = 4e-21
Identities = 144/560 (25%), Positives = 235/560 (41%), Gaps = 80/560 (14%)
Query: 1 MIILGVHDGHDAGAVLFKGDK--IYAVNEERLNRIKKYRGFPRLSVRKVLELGEVSPEEV 58
M+I+ GHD GAV GD+ +Y++ E+ +R + + + VL+L E E
Sbjct: 1 MLIVAFKPGHD-GAVAAIGDRRLLYSLESEKDSRPR----YSPILATTVLDLAERLGEVP 55
Query: 59 DAIAVAGLFRRRNRLLELEN------ELKSVFGSEF-RKKVIFVE--HHLAHASSAYYTS 109
D +A+ G R + E +V S F K+V F H +H A +
Sbjct: 56 DVVALGGWSDLRPNRISYTGAGYSGIEEPTVTTSRFFGKEVKFFSSTHERSHIYMALGMA 115
Query: 110 GLSDAIVLTIDA-AGDG-----LSSTVSIARKGEMFRI--AQSTYIDSLGDFYASVTELL 161
D+ V T+ GD + I RK ++ A+ +++ L D T
Sbjct: 116 PRDDSPVQTVLVWEGDVGAFYVIDGHQRITRKVQVMSGPGARYSFLFGLADPTFPTT--- 172
Query: 162 GFKPMRHE-GKVMSLAAYGKPSYELSAVIEVSGLSFENKLKVIGVEATKKLAEFFSFPLD 220
G KP ++ GK+M+LAA+G + + + V + L + +P
Sbjct: 173 GGKPRLNDAGKLMALAAFGDSADADADITHV---------------VERILKQDSMYPAP 217
Query: 221 KAKEVSSNLKRGFMSGKLERKAIEIAASAQAHLERLIE---EMGLELRKYNLPIAYAGGV 277
K + S L + +E +IAA+ ERL E E+ + P+ +GG
Sbjct: 218 KGEYRDSVL----YNAGVESPECKIAAALLT--ERLFETFAEVARQEMPEGSPLYISGGC 271
Query: 278 AQNVKANAVLR--GIFGDIWVFPAMDDAGLAFGAAAYIKAQMDILFGKWKPFKLEHVFLG 335
N N++ G F ++V P +D+G A G A + G HV
Sbjct: 272 GLNCDWNSLWAQLGHFSSVFVAPCTNDSGSALGTAI---DALTTFTGD------PHVDWS 322
Query: 336 PYYSLDFVEDVLK------REKLEYEEVDVPSFVSDSLVDGKIVGLFQGELEYGPRALGH 389
Y L+FV D LE++E+ S +L G++V QG E GPRAL +
Sbjct: 323 VYSGLEFVTDTQPDPARWTSRPLEHDEL------SGALAGGRVVAWVQGRWEIGPRALCN 376
Query: 390 RSILADPRDEKVKEKLNLALKRDVFQPFAPSILEEDFPKYIEDLTGEPNRFMTMSYKASD 449
RS+LA+P +++LN +R+ ++P AP ED K + +P + S
Sbjct: 377 RSLLAEPFGAVTRDRLNEIKQREDYRPIAPVCRVEDLGKVFHEDFEDPYMLYFRRVRESS 436
Query: 450 EFVEVAPAVVHVDGTTRPQSVPE-WLGEYYEIIRKFKEKSGVGAVLNTSFNMHGEPIVCS 508
AV HVDG+ R Q+V + + + ++ F + GVG + NTS N +GE +
Sbjct: 437 GL----RAVTHVDGSARVQTVRDSGNPQMHRLLSAFAAQRGVGVLCNTSLNFNGEGFINR 492
Query: 509 PRDAIRTAKIANLDVLVLED 528
D + + + +V+ D
Sbjct: 493 MSDLVLYCESRGISDMVVGD 512
>sp|O85728|CMCH_STRCL 3'-HYDROXYMETHYLCEPHEM-O-CARBAMOYLTRANSFERASE
(3'-HYDROXYMETHYLCEPHEM-O-CASE) (CCT)
>gi|3328168|gb|AAC32493.1| (AF073897) carbamoyl
transferase CmcH [Streptomyces clavuligerus]
Length = 521
Score = 103 bits (254), Expect = 6e-21
Identities = 108/407 (26%), Positives = 177/407 (42%), Gaps = 61/407 (14%)
Query: 133 ARKGEMFRIAQSTYIDSLGDFYASVTELLGFKPMRHE-GKVMSLAAYGKP---SYELSAV 188
AR +F +A T+ D+ G KP ++ GK+M+LAA+G S ++ V
Sbjct: 156 ARYSFLFGLADPTFPDT------------GGKPRLNDAGKLMALAAFGDSADASPDIRHV 203
Query: 189 IEVSGLSFENKLKVIGVEATKKLAEFFSFPLDKAKEVSSNLKRGFMSGKLERKAIEIAAS 248
+E + L + +P KA+ S L + +E + +IAA+
Sbjct: 204 VE------------------RVLKQDSMYPAPKAEYRDSVLH----NAGVESEECKIAAA 241
Query: 249 AQAHLERLIEEMGLELRKY---NLPIAYAGGVAQNVKANA--VLRGIFGDIWVFPAMDDA 303
ERL E R+ P+ +GG N N+ G F ++V P +D+
Sbjct: 242 LLT--ERLFETFAEVARRELPEGTPLYISGGCGLNCDWNSQWAQLGHFSSVFVAPCTNDS 299
Query: 304 GLAFGAAAYIKAQMDILFGKWKPFKLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVP-SF 362
G A G A + G H+ Y L+FV D + + +E V + +
Sbjct: 300 GSALGTAI---DALTTFTGD------PHIDWNVYSGLEFVHDT-RPDPARWESVPLDHAA 349
Query: 363 VSDSLVDGKIVGLFQGELEYGPRALGHRSILADPRDEKVKEKLNLALKRDVFQPFAPSIL 422
+S +L G++V QG E GPRALG+RS+LA+ +++LN R+ ++P AP
Sbjct: 350 LSSALAAGRVVAWVQGRWEIGPRALGNRSLLAEAFSSASRDRLNTVKMREDYRPIAPVCR 409
Query: 423 EEDFPKYIEDLTGEPNRFMTMSYKASDEFVEVAPAVVHVDGTTRPQSVPEWLG-EYYEII 481
ED K + +P+ M Y AV HVDG+ R Q+V E + ++
Sbjct: 410 VEDLGKVFHEDFEDPH----MLYFRRVREESGVRAVTHVDGSARCQTVTGTSNPELHRLL 465
Query: 482 RKFKEKSGVGAVLNTSFNMHGEPIVCSPRDAIRTAKIANLDVLVLED 528
F + G+G + NTS N +G+ + D +R + + +V+ D
Sbjct: 466 SVFAQGQGLGVLCNTSLNFNGDGFINRMSDLVRYCEWREIQDMVVGD 512
>sp|Q01990|NODU_RHIFR NODULATION PROTEIN U >gi|320401|pir||S28439 nodulation protein nodU
- Rhizobium fredii >gi|152380|gb|AAA72293.1| (L03520)
nodulation protein [Sinorhizobium fredii]
Length = 581
Score = 100 bits (247), Expect = 4e-20
Identities = 78/255 (30%), Positives = 118/255 (45%), Gaps = 18/255 (7%)
Query: 271 IAYAGGVAQNVKANAVLR--GIFGDIWVFPAMDDAGLAFGAAAY-IKAQMDILFGKWKPF 327
+ AGG N+K N+ LR G+F +WV P +D+G A GAA I AQ + W
Sbjct: 327 LCIAGGCGLNIKWNSALRQTGLFDSVWVPPFPNDSGSAIGAACCEIVAQQGFVPLDWS-- 384
Query: 328 KLEHVFLGPYYSLDFVEDVLKREKLEYEEVDVPSFVSDSLVDGKIVGLFQGELEYGPRAL 387
V+ GP V EV + L K V G E GPRAL
Sbjct: 385 ----VYSGPSLQDRQVPAGWHASPCSISEV------AAILASNKPVVFLSGRTELGPRAL 434
Query: 388 GHRSILADPRDEKVKEKLNLALKRDVFQPFAPSILEEDFPKYIEDLTGEPNRFMTMSYKA 447
G RSILA ++K+ LN R+ F+P AP LE+ P G P+ +M ++
Sbjct: 435 GGRSILAAATSPEMKDHLNEIKFREHFRPVAPICLEDRAPDIFS--PGTPDPYMLFDHQT 492
Query: 448 SDEFVEVAPAVVHVDGTTRPQSVP-EWLGEYYEIIRKFKEKSGVGAVLNTSFNMHGEPIV 506
+ + PAVVH+DG+ R Q++ + E++ ++++ +G+ + NTS N HG
Sbjct: 493 KMPWQDKVPAVVHLDGSARLQTISRNSQHKVAEVLVEYEKLTGIPLLCNTSANYHGRGFF 552
Query: 507 CSPRDAIRTAKIANL 521
S A ++ ++
Sbjct: 553 PSAAAACEWGRVEHV 567
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191454257
Number of Sequences: 2977
Number of extensions: 8145069
Number of successful extensions: 20465
Number of sequences better than 1.0e-10: 24
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 20353
Number of HSP's gapped (non-prelim): 33
length of query: 534
length of database: 189,106,746
effective HSP length: 58
effective length of query: 476
effective length of database: 154,394,500
effective search space: 73491782000
effective search space used: 73491782000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)