BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1613 (PAB1613) DE:Hypothetical protein
(262 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75093 hypothetical protein PAB1613 - Pyrococcus abyssi (st... 545 e-154
pir||G71069 hypothetical protein PH1252 - Pyrococcus horikoshii ... 464 e-130
sp|Q57820|Y375_METJA HYPOTHETICAL PROTEIN MJ0375 >gi|2128283|pir... 154 1e-36
gi|11497692 conserved hypothetical protein [Archaeoglobus fulgid... 150 1e-35
pir||C72209 conserved hypothetical protein - Thermotoga maritima... 106 4e-22
pir||C71142 hypothetical protein PH0350 - Pyrococcus horikoshii ... 98 9e-20
pir||C75010 hypothetical protein PAB1064 - Pyrococcus abyssi (st... 98 1e-19
pir||A69012 conserved hypothetical protein MTH1091 - Methanobact... 80 4e-14
>pir||F75093 hypothetical protein PAB1613 - Pyrococcus abyssi (strain Orsay)
>gi|5458563|emb|CAB50051.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 262
Score = 545 bits (1388), Expect = e-154
Identities = 262/262 (100%), Positives = 262/262 (100%)
Query: 1 MRFLIRVRPEERKFKVPYNHQYYLQGLIYNRIKMVNPRLSTFLHETRGPKMFTYSLFMTE 60
MRFLIRVRPEERKFKVPYNHQYYLQGLIYNRIKMVNPRLSTFLHETRGPKMFTYSLFMTE
Sbjct: 1 MRFLIRVRPEERKFKVPYNHQYYLQGLIYNRIKMVNPRLSTFLHETRGPKMFTYSLFMTE 60
Query: 61 KRKHPKGLPYFLGFKRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLREP 120
KRKHPKGLPYFLGFKRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLREP
Sbjct: 61 KRKHPKGLPYFLGFKRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLREP 120
Query: 121 TKFSGSTFITLSPVAVTMVKEGKRYDVSPLEEEFYTLIKENLKDKYVMIKGEKPPDDFEM 180
TKFSGSTFITLSPVAVTMVKEGKRYDVSPLEEEFYTLIKENLKDKYVMIKGEKPPDDFEM
Sbjct: 121 TKFSGSTFITLSPVAVTMVKEGKRYDVSPLEEEFYTLIKENLKDKYVMIKGEKPPDDFEM 180
Query: 181 EVIVAKPKRFEVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLGFGMVKVENNRE 240
EVIVAKPKRFEVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLGFGMVKVENNRE
Sbjct: 181 EVIVAKPKRFEVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLGFGMVKVENNRE 240
Query: 241 EKGMGVQERMLFKNEDGLKTGP 262
EKGMGVQERMLFKNEDGLKTGP
Sbjct: 241 EKGMGVQERMLFKNEDGLKTGP 262
>pir||G71069 hypothetical protein PH1252 - Pyrococcus horikoshii
>gi|3257670|dbj|BAA30353.1| (AP000005) 267aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 267
Score = 464 bits (1182), Expect = e-130
Identities = 220/263 (83%), Positives = 242/263 (91%), Gaps = 2/263 (0%)
Query: 1 MRFLIRVRPEERKFKVPYNHQYYLQGLIYNRIKMVNPRLSTFLHETRGPKMFTYSLFMTE 60
MRFLI+V+PEERKF+VPYNHQY+LQGLIYNRIK+ NPRLSTFLHET+GPK+FTYSLFMTE
Sbjct: 4 MRFLIKVKPEERKFRVPYNHQYFLQGLIYNRIKLTNPRLSTFLHETKGPKLFTYSLFMTE 63
Query: 61 KRKHPKGLPYFLGFKRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLREP 120
+R+HPKGLPYFLG++RGFFYFSTCIPEIAEAFITGLFREPEI LWGE+FYLEEVKTL+EP
Sbjct: 64 RREHPKGLPYFLGYRRGFFYFSTCIPEIAEAFITGLFREPEITLWGEKFYLEEVKTLKEP 123
Query: 121 TKFSGSTFITLSPVAVTMVKEGKRYDVSPLEEEFYTLIKENLKDKYVMIKGEKPPDDFEM 180
KFSGSTFITLSP+AVTM K GKRYDVSPLEEEFY LI+ENLKDKYVMIKGEKPPDDFEM
Sbjct: 124 KKFSGSTFITLSPIAVTMEKGGKRYDVSPLEEEFYALIRENLKDKYVMIKGEKPPDDFEM 183
Query: 181 EVIVAKPKRFEVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLGFGMVKVENNRE 240
E+I AKPKRFEVKPGIYQMAWHLVF+AYGDDELI+VGYVVGFGEKNSLGFGMVKV+ R+
Sbjct: 184 EIIAAKPKRFEVKPGIYQMAWHLVFRAYGDDELIRVGYVVGFGEKNSLGFGMVKVDEQRK 243
Query: 241 -EKGMG-VQERMLFKNEDGLKTG 261
K +G QE M F L+TG
Sbjct: 244 RRKNIGSFQESMSFNENRELETG 266
>sp|Q57820|Y375_METJA HYPOTHETICAL PROTEIN MJ0375 >gi|2128283|pir||G64346 hypothetical
protein MJ0375 - Methanococcus jannaschii
>gi|1591082|gb|AAB98364.1| (U67490) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 254
Score = 154 bits (385), Expect = 1e-36
Identities = 91/240 (37%), Positives = 132/240 (54%), Gaps = 9/240 (3%)
Query: 16 VPYNHQYYLQGLIYNRIKMVNPRLSTFLHETRGPKMFTYSLFMTEKRKHPK-GLPYFLGF 74
+PYNHQYYL IYN+I NP + LH + K FT+SL KR K G+ G
Sbjct: 19 IPYNHQYYLASAIYNKIHSANPAYAKRLHNYQKFKFFTFSLLQIRKRVIRKEGIETIDG- 77
Query: 75 KRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLREPTKFSGSTFITLSPV 134
+ + Y S+ E E F+ GL + ++ + F++ + K L P KF+ T+SP+
Sbjct: 78 -KAYLYISSPNNEFIENFVAGLLEDGKLRVGNVEFFVRKAKILPIPKKFN--ILKTISPI 134
Query: 135 AV-TMVKEG---KRYDVSPLEEEFYTLIKENLKDKYVMIKGEKPPDDFEMEVIVAKPKRF 190
+ TM++ K YD+ P +FY +K NLK KY EK +FE EV+ +PKR
Sbjct: 135 YLKTMIETEDGLKTYDLLPNNSKFYENLKNNLKKKYEAFYNEKCDMNFEFEVLKFRPKRM 194
Query: 191 EVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLGFGMVKVENNREEKGMGVQERM 250
+K IY +VFK +GD +LIK GY GFGEKNS+GFGMV ++ +K ++ ++
Sbjct: 195 RIKNDIYCRCSEMVFKVWGDYDLIKFGYECGFGEKNSMGFGMVVNVEDKNQKNKKLKTKI 254
>gi|11497692 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7430193|pir||H69258 conserved hypothetical protein
AF0072 - Archaeoglobus fulgidus
>gi|2650574|gb|AAB91154.1| (AE001101) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 241
Score = 150 bits (376), Expect = 1e-35
Identities = 92/241 (38%), Positives = 132/241 (54%), Gaps = 7/241 (2%)
Query: 1 MRFLIRVRPEERKFKVPYNHQYYLQGLIYNRIKMVNPRLSTFLHETRGPKMFTYS-LFMT 59
MR I + F++ NH Y+L IY I+ +P LS LH+ PK FT+S LF+
Sbjct: 1 MRLKISLLSPADSFEIDLNHSYHLASAIYRAIERADPSLSIELHKPDVPKFFTFSKLFIP 60
Query: 60 EKRKHPKGLPYFLGFKRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLRE 119
+++ +G + +F+FST E+A + + GL +PEI + G F + EV L E
Sbjct: 61 KRKFRIEGEKMVSDCEEAYFFFSTLRNEVAASLVEGLLSKPEIRICGVDFIVSEVSVLPE 120
Query: 120 PTKFSGSTFITLSPV-AVTMVKEGKR---YDVSPLEEEFYTLIKENLKDKYVMIKGEKPP 175
F+TLSP+ A T V E R +D+ P + +FY +I +NL KYV+ P
Sbjct: 121 REVKGREKFVTLSPIYASTSVGENGRRRIFDLYPKDSKFYEVILQNLVKKYVLYYKSAPE 180
Query: 176 D-DFEMEVIVAKPKRFEVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLGFGMVK 234
+ DF M+ + K KR +K ++ +VFKA G EL+ VGY GFG KNS+GFGMVK
Sbjct: 181 NLDFHMKPLNVKAKRIRLKDTFHRCV-EMVFKAEGSPELLDVGYKAGFGSKNSMGFGMVK 239
Query: 235 V 235
V
Sbjct: 240 V 240
>pir||C72209 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982395|gb|AAD36877.1|AE001818_12 (AE001818)
conserved hypothetical protein [Thermotoga maritima]
Length = 250
Score = 106 bits (261), Expect = 4e-22
Identities = 77/247 (31%), Positives = 125/247 (50%), Gaps = 18/247 (7%)
Query: 5 IRVRPEERKFKVPYNHQYYLQGLIYNRIKMVNPRLSTFLHET---RGPKMFTYS-LFMTE 60
++V + + VP N+ Y+L IY R+ N + FLHE + K FT+S LF
Sbjct: 3 LKVSFQAMESTVPLNYNYFLSSFIYKRLASQNENFARFLHEKGYGKRFKFFTFSQLFFEN 62
Query: 61 KRKHPKGLPYFLGFKRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLREP 120
R + + F G +G++Y S+ + E + L +P I + F ++ +
Sbjct: 63 SRVSGERIFIFPG--KGWWYISSPVVEFVRYMFSSLSEDPVIRVGKTEFIVKSIDIENSL 120
Query: 121 TKFSGSTFITLSPVAVTMVKE--GKRYD--VSPLEEEFYTLIKENLKDKYVMIKGEKPPD 176
S F+ LSP+ V++ +E GK Y + P EEEFY + ++NL KY G+ P
Sbjct: 121 PDQSEYHFVMLSPLVVSVPEENNGKLYHRYLHPGEEEFYEVFRKNLMKKYRAFYGKDPEG 180
Query: 177 DFEM----EVIVAK---PKRFEVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLG 229
E+ + I ++ KR ++K + A FK G+ +L+++GY GFGEKNS+G
Sbjct: 181 TVEVIPDWDYIKSRHRITKRIKLK-NAFVRAVVFPFKIRGEKKLVEIGYEAGFGEKNSMG 239
Query: 230 FGMVKVE 236
FGMV ++
Sbjct: 240 FGMVALK 246
>pir||C71142 hypothetical protein PH0350 - Pyrococcus horikoshii
>gi|3256741|dbj|BAA29424.1| (AP000002) 239aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 239
Score = 98.3 bits (241), Expect = 9e-20
Identities = 71/242 (29%), Positives = 118/242 (48%), Gaps = 12/242 (4%)
Query: 1 MRFLIRVRPEERKFKVPYNHQYYLQGLIYNRIKMVNPRLSTFLHETRGPKMFTYSLFMTE 60
MR +++ P + +P+N+ Y + I ++ + P ++ L G +T+S +
Sbjct: 1 MRIEVKLLPLKDNPILPFNYNYEVYSQILEKVNSIEPTIAKLLSSPHG--FWTFSRIIVR 58
Query: 61 KRK--HPKGLPYFLGFKRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLR 118
KRK KG+ Y S+ +I A + + PE + F + ++K ++
Sbjct: 59 KRKILPDKGIEILSDDVS--LYISSSNEDIIRAIAEAVEKSPEFKIGELSFLVGDIKAIK 116
Query: 119 EPTKFSGSTFITLSPVAVTMVK-EGKR---YDVSPLEEEFYTLIKENLKDKYVMIKGEKP 174
+ F TLSP+ V VK EG + +D+ P +E F +++ + +Y + GE P
Sbjct: 117 VKELGKENVFSTLSPIVVRTVKFEGNKLRHWDLYPHDELFMDRLRKVMILRYSEVMGETP 176
Query: 175 PD-DFEMEVIVAKPKRFEVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLGFGMV 233
D DF +EV+ KP R V Y +VF+ G +E+ + GY GFGEK LGFGMV
Sbjct: 177 KDRDFTIEVLKFKPTRLMVGSS-YIRGSLMVFRYAGSEEIARFGYENGFGEKTGLGFGMV 235
Query: 234 KV 235
K+
Sbjct: 236 KL 237
>pir||C75010 hypothetical protein PAB1064 - Pyrococcus abyssi (strain Orsay)
>gi|5459035|emb|CAB50521.1| (AJ248288) hypothetical
protein [Pyrococcus abyssi]
Length = 239
Score = 97.9 bits (240), Expect = 1e-19
Identities = 73/242 (30%), Positives = 120/242 (49%), Gaps = 12/242 (4%)
Query: 1 MRFLIRVRPEERKFKVPYNHQYYLQGLIYNRIKMVNPRLSTFLHETRGPKMFTYSLFMTE 60
MR I++ P +P+N+ Y + I N++ + P+++ L G +T+S +
Sbjct: 1 MRIEIKLLPLTETPILPFNYNYDVYTQIVNKVNSIEPKVAGLLSSPHG--FWTFSRIIIR 58
Query: 61 KRK--HPKGLPYFLGFKRGFFYFSTCIPEIAEAFITGLFREPEIVLWGERFYLEEVKTLR 118
KRK KG+ Y S+ EI A + + PE + F + +VK ++
Sbjct: 59 KRKIIPEKGIEILSDDVS--LYVSSSNEEIIRAIAEAVEKSPEFKIGNVSFLVGDVKAIK 116
Query: 119 EPTKFSGSTFITLSPVAVTMVK-EG---KRYDVSPLEEEFYTLIKENLKDKYVMIKGEKP 174
+ F TLSP+ V +K EG + +D+ P +E F +++ + ++ I G P
Sbjct: 117 IKEIGKENVFSTLSPIVVRTIKFEGDKLRHWDLYPHDEMFMDKLRKVMLLRFNEIMGYSP 176
Query: 175 PD-DFEMEVIVAKPKRFEVKPGIYQMAWHLVFKAYGDDELIKVGYVVGFGEKNSLGFGMV 233
D +F++EV+ KP R V Y +VFK G +E+ + GY GFGEK +LGFGMV
Sbjct: 177 EDKEFQIEVLKFKPTRLIVGNS-YIRGSLMVFKYTGSEEIARFGYENGFGEKTNLGFGMV 235
Query: 234 KV 235
K+
Sbjct: 236 KL 237
>pir||A69012 conserved hypothetical protein MTH1091 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622191|gb|AAB85580.1| (AE000879) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 154
Score = 79.6 bits (193), Expect = 4e-14
Identities = 55/149 (36%), Positives = 76/149 (50%), Gaps = 10/149 (6%)
Query: 95 GLFREPEIVLWGERFYLEEVKTLREPTKFSGSTFITLSPVAVTMVKEG----KRYDVSPL 150
G PEI +E V+ L P F TLSP+ + V+E K++DV+P
Sbjct: 3 GFIDRPEIDFLRRSVNVEYVEFLEPPEFRRNMKFRTLSPIIIKTVREEDGVLKQWDVNPN 62
Query: 151 EEEFYTLIKENLKDKYVMIKGEKPPDDFEMEVIVA---KPKRFEV-KPGI--YQMAWHLV 204
+ +FY ++ NL KY G+ D++ V K KR + K G Y A+H+
Sbjct: 63 DLKFYENLQNNLVRKYREFYGDYDGDEYLRLVPYQRSIKRKRIMIPKEGAETYHRAYHMK 122
Query: 205 FKAYGDDELIKVGYVVGFGEKNSLGFGMV 233
F+ GD LI+ GY GFGEKNS+GFGMV
Sbjct: 123 FRVEGDPRLIEFGYDCGFGEKNSMGFGMV 151
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.143 0.427
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105767832
Number of Sequences: 2977
Number of extensions: 4744677
Number of successful extensions: 8902
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8888
Number of HSP's gapped (non-prelim): 8
length of query: 262
length of database: 189,106,746
effective HSP length: 52
effective length of query: 210
effective length of database: 157,985,422
effective search space: 33176938620
effective search space used: 33176938620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)