BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1615 1088683 1088234 -150 !not a gene!
         (150 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B71050 hypothetical protein PH1097 - Pyrococcus horikoshii ...   195  2e-49

>pir||B71050 hypothetical protein PH1097 - Pyrococcus horikoshii
           >gi|3257513|dbj|BAA30196.1| (AP000005) 133aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 133
           
 Score =  195 bits (491), Expect = 2e-49
 Identities = 101/133 (75%), Positives = 108/133 (80%)

Query: 1   MFMRKGSSSSMTHPFILSILFAATTKGVLYFLSISMLSIVCGWNPSFISTTKTARSXXXX 60
           MF+R GSSSS+T P ILSIL AATT GVLY L+ISMLSIVCGW PSF S T+TA+S    
Sbjct: 1   MFIRNGSSSSITQPLILSILLAATTNGVLYLLNISMLSIVCGWKPSFTSITRTAKSAKLP 60

Query: 61  XXXXXXVKASCPGVSMKSSPGSFISAFQSFIKGPAIFLTTSIGTSVAPMCWVIPPASFAA 120
                 VKASCPGVSMKS PGS ISAFQS I+GPAIFLTTSIGTSVAPMC VIPPAS AA
Sbjct: 61  PLALRLVKASCPGVSMKSKPGSLISAFQSLIRGPAIFLTTSIGTSVAPMCCVIPPASLAA 120

Query: 121 TLVFLILSSKVVL 133
           T VFLILSS+VVL
Sbjct: 121 TFVFLILSSRVVL 133


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.132    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42697223
Number of Sequences: 2977
Number of extensions: 1214930
Number of successful extensions: 5025
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5024
Number of HSP's gapped (non-prelim): 1
length of query: 150
length of database: 189,106,746
effective HSP length: 53
effective length of query: 97
effective length of database: 157,386,935
effective search space: 15266532695
effective search space used: 15266532695
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 161 (67.1 bits)