BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1618 (PAB1618) DE:Hypothetical protein
(388 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (st... 773 0.0
pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii ... 577 e-164
pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii ... 123 4e-27
pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (st... 108 9e-23
gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfat... 108 2e-22
gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfat... 105 8e-22
pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (st... 103 3e-21
pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (st... 102 9e-21
pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (st... 101 2e-20
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 96 9e-19
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 90 3e-17
pir||C72308 conserved hypothetical protein - Thermotoga maritima... 90 3e-17
pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (st... 88 1e-16
pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (st... 86 8e-16
pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (st... 83 7e-15
gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfat... 69 8e-11
>pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (strain Orsay)
>gi|5458557|emb|CAB50045.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 388
Score = 773 bits (1975), Expect = 0.0
Identities = 388/388 (100%), Positives = 388/388 (100%)
Query: 1 MACKNFFSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGK 60
MACKNFFSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGK
Sbjct: 1 MACKNFFSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGK 60
Query: 61 FIRKRGHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRKTSI 120
FIRKRGHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRKTSI
Sbjct: 61 FIRKRGHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRKTSI 120
Query: 121 EEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISIIFTGS 180
EEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISIIFTGS
Sbjct: 121 EEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISIIFTGS 180
Query: 181 MPGILIRYLNSEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAV 240
MPGILIRYLNSEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAV
Sbjct: 181 MPGILIRYLNSEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAV 240
Query: 241 KELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFINVYSSP 300
KELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFINVYSSP
Sbjct: 241 KELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFINVYSSP 300
Query: 301 IYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRSDGKRYW 360
IYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRSDGKRYW
Sbjct: 301 IYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRSDGKRYW 360
Query: 361 IEDPLLRIVVSNFEFHGIPWKTEYRRVP 388
IEDPLLRIVVSNFEFHGIPWKTEYRRVP
Sbjct: 361 IEDPLLRIVVSNFEFHGIPWKTEYRRVP 388
>pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii
>gi|3256840|dbj|BAA29523.1| (AP000002) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 577 bits (1472), Expect = e-164
Identities = 277/367 (75%), Positives = 331/367 (89%), Gaps = 4/367 (1%)
Query: 1 MACKNFFSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGK 60
M CKNFF+TRPI +E+CLW + R+IVD+L R L+GNI++LLGPRRVGKTSVVNV++ K
Sbjct: 1 MPCKNFFTTRPIMEEDCLW-DKRRKIVDDLFRTVLRGNIAILLGPRRVGKTSVVNVISQK 59
Query: 61 FIRKRGHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRKTSI 120
F ++R HHYIYFNFSRFIGARAISI+DIEPKRTS+KLITTSKSYV+S KG+SVE+RKTSI
Sbjct: 60 FAKRRNHHYIYFNFSRFIGARAISIADIEPKRTSLKLITTSKSYVISLKGISVEVRKTSI 119
Query: 121 EEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISIIFTGS 180
EEFTSDFS L+RILSQN++RGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNIS+IFTGS
Sbjct: 120 EEFTSDFSTLVRILSQNSERGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISMIFTGS 179
Query: 181 MPGILIRYLNSEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAV 240
MPG+LI YLN KPNFMR++E FTL RW+V+EG+EFLK GF +Y I V +ELELERAV
Sbjct: 180 MPGLLIEYLNPGPDKPNFMRASETFTLSRWNVEEGLEFLKKGFESYGISVRNELELERAV 239
Query: 241 KELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFINVYSSP 300
KELGGIPGFISYYG+TV+NLV++GV V+ AL +ALEES+ +AL+EWK+DLEAF+NVY+SP
Sbjct: 240 KELGGIPGFISYYGITVINLVRSGVPVEKALPRALEESKRYALEEWKKDLEAFLNVYNSP 299
Query: 301 IYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRSDGKRYW 360
IYVEV++VLA +YP+AL+GAEVY+ +MN AP+R+QHIYKYLD LEKVGFIRS+G +YW
Sbjct: 300 IYVEVMKVLASSYPTALKGAEVYR---RMNRAPKRIQHIYKYLDVLEKVGFIRSEGGKYW 356
Query: 361 IEDPLLR 367
IEDP+LR
Sbjct: 357 IEDPILR 363
>pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii
>gi|3256945|dbj|BAA29628.1| (AP000002) 362aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 362
Score = 123 bits (305), Expect = 4e-27
Identities = 113/377 (29%), Positives = 186/377 (48%), Gaps = 33/377 (8%)
Query: 7 FSTRPITDEECLWGENHRRIVDELLRATLKGN-ISVLLGPRRVGKTSVVNVVAGKF---- 61
FS P E L+ + + + E+ A +G + +LLGPRR+GK+S++NV +
Sbjct: 6 FSPYPKVKREELF--DREKELKEIEEAVKRGERLLLLLGPRRIGKSSILNVALSELPYPS 63
Query: 62 --IRKRGHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRKTS 119
+ R + Y + +R+I + + + R +L ++ ++ KG+ +
Sbjct: 64 VKVDVRKVYSEYSSVNRYIIGKML----LSALRGRKRLFEEARMFLEKVKGVRISGVNIE 119
Query: 120 IEEFTSDFSKLLRILSQ-NAKRGLLI--FDEAQVLARLKNLDFRGLIQEITDSYPNISII 176
I ++LL +L++ +++G +I FDEAQ L + G+I D+ N++ I
Sbjct: 120 INPKGFSLAELLEVLNEYGSEKGRIIIAFDEAQYLRFGGATRYDGIIAYAIDNLENLTFI 179
Query: 177 FTGSMPGILIRYLNSEASK-PNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELE 235
TGS G+L +L E K P F R + R+S +EFL +GFR +EV + E
Sbjct: 180 LTGSEVGLLYDFLKFEDPKAPLFGRYHHDIFIQRFSSDMSLEFLMAGFREAGVEV-ERRE 238
Query: 236 LERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFIN 295
LE+AV+EL GIPG+++ YG V N ++ +L+ ++E+ S E R
Sbjct: 239 LEKAVEELDGIPGWLALYGYIRVTKKLNH---EDCMLEVIKEASSIVNKELSR------- 288
Query: 296 VYS-SPIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRS 354
++S SP Y +L+ +A Y S R + Y L V P + K LD L K G++
Sbjct: 289 LFSYSPRYRFILKAIALGY-SRWRDIKDYLTL---KVGPINDANFSKLLDNLVKHGYVER 344
Query: 355 DGKRYWIEDPLLRIVVS 371
RY I DP+LR V+S
Sbjct: 345 RDGRYVITDPVLRKVLS 361
>pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (strain Orsay)
>gi|5458936|emb|CAB50423.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 357
Score = 108 bits (268), Expect = 9e-23
Identities = 104/370 (28%), Positives = 177/370 (47%), Gaps = 26/370 (7%)
Query: 7 FSTRPITDEECLWGENHRRIVDELLRATLKGN-ISVLLGPRRVGKTSVVNVVAGKFIRKR 65
FS P T E L+ + + ++EL +A G + +LLG RR+GK+S++NV G+
Sbjct: 3 FSPYPKTKREELF--DREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
Query: 66 GHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRKTSIEEFTS 125
+ +S F + + S KL +K+++ KG+S+ + +
Sbjct: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKL-EEAKNFLRRVKGISISGVRIDVSPRDF 119
Query: 126 DFSKLLRILSQNAKRG---LLIFDEAQVLARLKNLDFRGLIQEITDSYPNISIIFTGSMP 182
+LL L+ +R ++ FDEAQ L + G++ D+ N++ I TGS
Sbjct: 120 SIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGSEV 179
Query: 183 GILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAVK 241
G+L +L +E P F R L +++ + EFL+ GF + +V+ ELE+E+AV+
Sbjct: 180 GLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVS-ELEIEKAVE 238
Query: 242 ELGGIPGFISYYG-LTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFINVYS-S 299
EL GI G+++ YG + V VK+ ++A+ + L E+R E R ++S S
Sbjct: 239 ELDGIVGWLTLYGYIRVTRKVKH----EDAMEEILREARLILSTELSR-------LFSYS 287
Query: 300 PIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRSDGKRY 359
P Y +L+ ++ Y S R + Y L + + L+ L K G++ RY
Sbjct: 288 PRYKGILKAISLGY-SRWRDIKDYLTLKLGYINDSNFSSL---LENLVKSGYVEKRNGRY 343
Query: 360 WIEDPLLRIV 369
I DP+L V
Sbjct: 344 KISDPVLERV 353
>gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 387
Score = 108 bits (266), Expect = 2e-22
Identities = 109/390 (27%), Positives = 180/390 (45%), Gaps = 58/390 (14%)
Query: 7 FSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGKFIRKRG 66
F+TRP D + L+ + + ++ + + +G +LG RR+GKTSVVNV +++ G
Sbjct: 3 FNTRPKEDRKDLY--DREKEIEMIKDSIARGEWIAVLGMRRIGKTSVVNVA----VKEIG 56
Query: 67 HHYIYFNFSRFIGARAISISDIEPKRTSMKLITTS-----KSYVLSFKGLSVEIRKTSIE 121
+ N R +R PK + L+ K+Y + K + +E
Sbjct: 57 AIKVSINLMRIHDSRKKQY----PKHVLISLLIEEINEAIKNYTILGKVAKLLSNILGVE 112
Query: 122 EFTS-------------DFSKLLR----ILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQ 164
E + D + ++R I N K+ ++I DEAQ LA++ LDF +
Sbjct: 113 EIQTNKVRAKLTKIRGTDITYIIREMDSIARDNKKQLVIILDEAQELAKVNGLDFPSIFH 172
Query: 165 EITDSYPNISIIFTGSMPGILIRYL-NSEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGF 223
++ D+ N IIFTGSM ++ + L N E ++P F R TL R+ ++ EFL+ GF
Sbjct: 173 DVYDNCKNTVIIFTGSMVKLIEKTLKNIEYTEPFFGRYIRKITLGRFLPEQSREFLEKGF 232
Query: 224 RAYKIEVNDELELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFAL 283
I+V DE ++ AVK L GIPG+++ +G K G + ++E A+
Sbjct: 233 EEEGIKV-DESVIDEAVKRLDGIPGWLTLFGSEYTFSAKMGTKPR------IDEIIEKAI 285
Query: 284 DEWKRDLEAFINVYSSPI-YVEVLRVLAKAYPSALRGAEVYKELDKM-------NVAPRR 335
+E + + FI SP+ Y V+ L + L G E+ K+ N+ R
Sbjct: 286 NEVRNEARNFIFSTQSPLRYSAVILALDR-----LGGKGELHEIVKVSSTILNENIPEPR 340
Query: 336 MQHIYKYLDTLEKVGFI--RSDGKRYWIED 363
+Y+ L+ L + FI R D + Y +D
Sbjct: 341 ---VYEILNRLVEFDFIERREDNEYYLHQD 367
>gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 105 bits (260), Expect = 8e-22
Identities = 93/347 (26%), Positives = 165/347 (46%), Gaps = 27/347 (7%)
Query: 35 LKGNISVLLGPRRVGKTSVVNVVAGKFIRKRGHHYIYFNFSRFIGARAISISD--IEPKR 92
L+ I+++LG RR GK+S++ + I + YIY + +F IS D +E ++
Sbjct: 27 LRAPITLVLGLRRTGKSSIIKIG----INELNLPYIYLDLRKFEERNYISYKDFLLELQK 82
Query: 93 TSMKLITTSKSYVLSFKGLSV------EIRKTSIEEFTSDFSKLLRILSQNAKRGLLI-F 145
KL+ S + + K + EI+ + F+ LL Q +K ++I
Sbjct: 83 EINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVL 142
Query: 146 DEAQVLARLKNLDFRGLIQEITDSYPNISIIFTGSMPGILIRYLNSE-ASKPNFMRSAEV 204
DEAQ L +L+ ++ + D+ I I +GS G+L YL E P F R+
Sbjct: 143 DEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFST 202
Query: 205 FTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAVKELGGIPGFISYYGLTVVNLVKNG 264
L +S +E +EFL+ GF+ I+ D E +++GGIPG+++Y+G ++ KN
Sbjct: 203 VELKPFSREEAIEFLRRGFQEADIDFKD---YEVVYEKIGGIPGWLTYFGFIYLD-NKN- 257
Query: 265 VAVKNALLKALEESRSFALDEWKRDLEAFINVYSSPIYVEVLRVLAKAYPSALRGAEVYK 324
+ A+ + LE ++ L E++ L + Y+ ++R L+K + ++V +
Sbjct: 258 --LDFAINQTLEYAKKLILKEFENFLHG--REIARKRYLNIMRTLSKCG----KWSDVKR 309
Query: 325 ELDKMNVAPRRMQHIYKYLDTLEKVGFIRSDGKRYWIEDPLLRIVVS 371
L+ IY YL L K +I +G++Y +PL+ + S
Sbjct: 310 ALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLISLAFS 356
>pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (strain Orsay)
>gi|5458722|emb|CAB50209.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 103 bits (255), Expect = 3e-21
Identities = 104/380 (27%), Positives = 181/380 (47%), Gaps = 33/380 (8%)
Query: 7 FSTRPITDEECLWGENHRRIVDELLRATLKG-NISVLLGPRRVGKTSVVNVVAGKF---- 61
F RP T+++ L+ + R + E A G NI +LLG RR+GK+S++NV +
Sbjct: 3 FDPRPKTEKKDLY--DRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
Query: 62 --IRKRGHHYIYFNFSRFIGARAISISDIEPKR----TSMKLITTSKSYVLSFKGLSVEI 115
+ R ++ Y + + AR I S + ++ T K++ + K +S G+ VE
Sbjct: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKIS--GIHVEF 118
Query: 116 RKTSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISI 175
+ ++ S F ++ + K+ ++ FDEAQ L RL + + GLI D+ PNI
Sbjct: 119 ERR--QDLPSIFERIDLWAEREGKKVVIAFDEAQYL-RLSGVRYDGLIAYAIDNLPNIIF 175
Query: 176 IFTGSMPGILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDEL 234
I TGS G+L +L KP F R E L R++ E +FL+ GF + DE
Sbjct: 176 ILTGSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDE- 234
Query: 235 ELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFI 294
E+E V + GI G+++ YG + VK + + +L+ ++++ +E + I
Sbjct: 235 EIEEVVNRIDGIVGWLTLYG--YLRGVKK-LGKEESLISLYSKAKALIEEEL-----SHI 286
Query: 295 NVYSSPIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRS 354
YS Y +L+ +A + + + Y E + + ++ K L K G++
Sbjct: 287 LAYSKR-YKFILKAVALG-NTRWKNIKEYVEFRTGRINDAKFSNLLK---NLVKYGYLEK 341
Query: 355 DGKRYWIEDPLLRIVVSNFE 374
Y I DPL++ +V+N +
Sbjct: 342 RDGEYIIPDPLVKEIVANLK 361
>pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (strain Orsay)
>gi|5458414|emb|CAB49902.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 102 bits (251), Expect = 9e-21
Identities = 106/381 (27%), Positives = 181/381 (46%), Gaps = 42/381 (11%)
Query: 7 FSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGKFIRKRG 66
F RP E ++ + + +DE+ A I+++LG RRVGK+S++ V + G
Sbjct: 3 FDPRPKEKREDIF--DREKEIDEIESAIRDYPITLILGIRRVGKSSLLKAVLNEM---EG 57
Query: 67 HHYI-----YFNFSRFIG----ARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRK 117
YI YF +I A+A+ + K +++ +S + S +G+SV K
Sbjct: 58 GIYIDVRKLYFESGGWITNVHLAKALEEAINSLKEPFKRILISS---LKSIEGISVSGVK 114
Query: 118 TSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVL---ARLKNLDFRGLIQEITDSYPNIS 174
S S L R+ Q +L FDEAQ L + +F ++ D+ PN+S
Sbjct: 115 VRFTHRVSLSSLLERLNEQGEV--ILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVS 172
Query: 175 IIFTGSMPGILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDE 233
+FTGS G+L ++ S+ P + R T+ +S + + FL++GF +EV +E
Sbjct: 173 FVFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEE 232
Query: 234 LELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAF 293
E++ AV LGGIPG++ +G V L A++ +LK EE L+E K+
Sbjct: 233 -EIKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMR-MVLKRAEELVKGELEELKK----- 285
Query: 294 INVYSSPIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIR 353
SP YV VL+ ++ + + + + + E + R+ I L+ L+ + +IR
Sbjct: 286 ----RSPRYVLVLKAISLGF-NRWKSIKEFVEARSGRIPNSRLASI---LENLQNMSWIR 337
Query: 354 ----SDGKRYWIEDPLLRIVV 370
+ KRY I DP++ ++
Sbjct: 338 PVFEDNEKRYKILDPVVERII 358
>pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (strain Orsay)
>gi|5458034|emb|CAB49524.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 354
Score = 101 bits (249), Expect = 2e-20
Identities = 99/373 (26%), Positives = 175/373 (46%), Gaps = 35/373 (9%)
Query: 7 FSTRPITDEECLWGENHRRIVDELLRATLKG-NISVLLGPRRVGKTSVVNVVAGKFIRKR 65
F+ +P T E L+ N + E+ R+ KG + +LLG RR+GK+S++NV + K
Sbjct: 3 FNPKPKTRREDLY--NREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
Query: 66 GHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYV---------LSFKGLSVEIR 116
+S+F ++++I K + TT + + +S G+++E+R
Sbjct: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTK---TTPRERIKDVLKGIRGVSIGGVNLELR 117
Query: 117 KTSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISII 176
+ S++L ++ +R ++ DEAQ L R N + LI D NIS I
Sbjct: 118 TNK----SVSLSEVLERINSLGERFVIAIDEAQYL-RFSNAKYPDLISWAIDDLGNISFI 172
Query: 177 FTGSMPGILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELE 235
TGS G+L +L + P F R+ L R++ + ++FL+ GF I+V +E E
Sbjct: 173 LTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEE-E 231
Query: 236 LERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFIN 295
LE V EL GI G+++ YG G++ + AL K E+++ L+E+ + E
Sbjct: 232 LEEVVDELDGIVGWLTLYGYNRY----LGLSHRKALKKLKEDAKRLILNEFSKLKEL--- 284
Query: 296 VYSSPIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRSD 355
SP Y ++ +A E + L+ + + ++ L+ L + ++
Sbjct: 285 ---SPRYELAMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNV---LNNLVRYDYLEKT 338
Query: 356 GKRYWIEDPLLRI 368
K Y+I DPL+ +
Sbjct: 339 TKGYFIPDPLVEL 351
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 95.6 bits (234), Expect = 9e-19
Identities = 108/388 (27%), Positives = 173/388 (43%), Gaps = 66/388 (17%)
Query: 7 FSTRPITDEECLWG--ENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGK---- 60
F RP T E ++ E R++ + L L ++LLG RRVGK+S++ +
Sbjct: 3 FDLRPKTRREDIFDREEEFRKLEESLENYPL----TLLLGIRRVGKSSLLRAFLNERPGI 58
Query: 61 ------FIRKRGHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVE 114
+RGH I +IS + ++ K+ L+ K L++E
Sbjct: 59 LIDCRELYAERGH----ITREELIKELQSTISPFQKFQSKFKIS-------LNLKFLTLE 107
Query: 115 IRKTSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVL---ARLKNLDFRGLIQEITDSYP 171
RK S+ E + L L + ++ FDEAQ L + L DS P
Sbjct: 108 PRKLSLREVFRE----LNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLP 163
Query: 172 NISIIFTGSMPGILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEV 230
N+ II TGS G+L +L ++ P + R A + + VEFLK GFR ++V
Sbjct: 164 NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV 223
Query: 231 NDELELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDL 290
E E+E AV+ L GIPG++ +G V ++NG A+ + LE ++ + E L
Sbjct: 224 -PENEIEEAVELLDGIPGWLVVFG---VEYLRNG-DFGRAMKRTLEVAKGLIMGE----L 274
Query: 291 EAFINVYSSPIYVEVLRVLAKAYPS--------ALRGAEVYKELDKMNVAPRRMQHIYKY 342
E SP YV++LR +A Y A++G ++ + PR +Y
Sbjct: 275 EELRR--RSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPE--------PR----LYAL 320
Query: 343 LDTLEKVGFIRSDGKRYWIEDPLLRIVV 370
L+ L+K+ +I + Y I DP++ V+
Sbjct: 321 LENLKKMNWIVEEDNTYKIADPVVATVL 348
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 90.5 bits (221), Expect = 3e-17
Identities = 95/361 (26%), Positives = 165/361 (45%), Gaps = 57/361 (15%)
Query: 39 ISVLLGPRRVGKTSVVNVVAGK----------FIRKRGHHYIYFNFSRFIGARAISISDI 88
+++LLG RRVGK+S++ + +RGH R I +
Sbjct: 33 MTLLLGIRRVGKSSLLKAYLSENPGILIDCRELYGERGHI-----------TRIDLIRKL 81
Query: 89 EPKRTSMKLITTSKSYVLSFKGLSVEIRKTSIEEFTSDFSKLLRILSQNAKRGLLIFDEA 148
+ + ++ + + L K L +E ++ S+ D + L + + + +L FDEA
Sbjct: 82 QERGNIVQKLLSRFKVSLDLKFLKIEPKEVSL----MDIFESLNEIGKKMGKFVLAFDEA 137
Query: 149 QVL---ARLKNLDFRGLIQEITDSYPNISIIFTGSMPGILIRYLN-SEASKPNFMRSA-E 203
Q L D L D+ N+ I+ TGS G+L +L ++ P + R A E
Sbjct: 138 QYLRFYGSRGGKDLLALFAYAYDNLENLKIVLTGSEVGLLHDFLGINDYESPLYGRVAGE 197
Query: 204 VFTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAVKELGGIPGFISYYGLTVVNLVKN 263
V+ P + + EFLK+GFR + V DE+ +E+A++ L GIPG++ +G+ +
Sbjct: 198 VYVEP-FDLHLSKEFLKAGFREVNLNVEDEI-IEKAIEMLDGIPGWLVLFGVEYMREKDY 255
Query: 264 GVAVKNALLKALEESRSFALDEWKRDLEAFINVYSSPIYVEVLRVLAKAYP--SALRGAE 321
A+K + E ++ L E R+LE S Y+E+LR +A Y S +R
Sbjct: 256 EKAMK----RTFEVAKGLILGEL-RELEK-----RSRRYLEILRGIALGYNRWSLIRDYL 305
Query: 322 VYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRSDGKRYWIEDPLLRIVVSNFEFHGIPWK 381
K + P +Y+ L+ L+K+G+I +Y + DPL+++ ++ WK
Sbjct: 306 AVKGI------PTPEPRLYELLNNLKKMGWINEVEGKYILSDPLVKVTLTE-------WK 352
Query: 382 T 382
T
Sbjct: 353 T 353
>pir||C72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981538|gb|AAD36076.1|AE001762_3 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 365
Score = 90.5 bits (221), Expect = 3e-17
Identities = 106/390 (27%), Positives = 169/390 (43%), Gaps = 60/390 (15%)
Query: 7 FSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGK------ 60
FS P T +E L+ + R + +L + I V+ G RRVGK+S+V V K
Sbjct: 8 FSLTPKTKKEDLF--DRERELKDLEKLLETYPIVVITGLRRVGKSSLVKVFLNKSDLLHI 65
Query: 61 ------FIRKRGHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYV-LSFKGLSV 113
G + + +RF+G IS S KL+ K ++ G S+
Sbjct: 66 TVDGRRLYETSGGNISSHHLTRFLGEELSRISK------SQKLLNVLKRVRGITVSGTSI 119
Query: 114 EIRKTSIEEFTSDFSKLLRILSQNAKRG----LLIFDEAQVLARLKNL---DFRGLIQEI 166
E+ +EF+ S LL L++ AKR ++ FDEAQ L + D L
Sbjct: 120 ELNP---KEFS--LSDLLEKLNETAKRRKKKIVIFFDEAQYLRYYGSRGGNDLLALFAYC 174
Query: 167 TDSYPNISIIFTGSMPGILIRYLNSEA-SKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRA 225
D++ N+ I +GS G+L +L E S P R T+ ++ + V+FL GFR
Sbjct: 175 YDNFENVRFIISGSEVGVLHDFLKLEDYSSPLHGRGIGFLTVRPFTFDQSVDFLMEGFRE 234
Query: 226 YKIEVNDELELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNAL--LKALEESRSFAL 283
++N ++E V+E+ GI G++ +G+ + K A+K +KAL E +
Sbjct: 235 VGEKIN--FDVEEIVREIDGIVGYLVLFGVKYLEKKKKDEALKEVFHAVKALFEKE---M 289
Query: 284 DEWKRDLEAFINVYSSPIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRM---QHIY 340
+E ++ E Y +LR +A RG + L + A +Y
Sbjct: 290 EELRKRSER---------YPFILRQIA-------RGINTWSALKNIFRAKGDFIGDSRLY 333
Query: 341 KYLDTLEKVGFIRSDGKRYWIEDPLLRIVV 370
L+TLEK+ FI Y I DP+ ++
Sbjct: 334 SLLETLEKMSFIEKTQSGYRIVDPVFERIL 363
>pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (strain Orsay)
>gi|5458924|emb|CAB50411.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 387
Score = 88.2 bits (215), Expect = 1e-16
Identities = 95/382 (24%), Positives = 168/382 (43%), Gaps = 40/382 (10%)
Query: 6 FFSTRPITDEECLWGENHRRIVDELLRATLKGN-ISVLLGPRRVGKTSVVNVVAGKF--- 61
+F RP + E L+ ++ELL + + VL G RR+GKTS++ V +
Sbjct: 25 YFDERPKSKREDLYDREEE--LEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVP 82
Query: 62 --------IRKRGHHYIYFNFSRFIGARAISISDIEPK-RTSMKLITTSKSYVLSFKGLS 112
+ +Y F + + I K + ++K+++ +S G S
Sbjct: 83 HVIVDLRGVNPNSRRDLYLRFQSALNDYLLRNKPIAKKVKDALKMVSG-----ISVSGFS 137
Query: 113 VEIRKTSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPN 172
V I ++E S S L R + ++ DE Q L + LI D Y
Sbjct: 138 VSISWKNLETLYSLISALER------ENFVIALDEVQEARGLVGKELASLIAHFYD-YGE 190
Query: 173 ISIIFTGSMPGILIRYLNSEASK-PNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVN 231
++ + TGS G+L +L + + P + R+ L R++ ++ +EFL+ GFR + VN
Sbjct: 191 VTFVLTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVN 250
Query: 232 DELELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLE 291
DE+ L+ AV+ L GI G++ +G+ L A + L + L+E+ + L E + L+
Sbjct: 251 DEI-LKLAVERLDGIVGWLVKFGV----LSLRSGASREVLERVLKEASALVLSELDKFLD 305
Query: 292 AFINVYSSPIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYL---DTLEK 348
+ Y+ VL+ +A + E + ++K ++ R+ I L +EK
Sbjct: 306 K--RFIARKRYLIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEK 363
Query: 349 VGFIRSDGKRYWIEDPLLRIVV 370
V + RY I DP+L +
Sbjct: 364 V--VEGRNVRYRIVDPVLEFAL 383
>pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (strain Orsay)
>gi|5458591|emb|CAB50079.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 348
Score = 85.8 bits (209), Expect = 8e-16
Identities = 102/372 (27%), Positives = 167/372 (44%), Gaps = 37/372 (9%)
Query: 7 FSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGKFIRKRG 66
F +P +E L+ + EL+ + K I++LLG RR GK+S++ V + I G
Sbjct: 3 FDPKPKERKEDLFDREEE--LAELISSITKYPITLLLGIRRTGKSSIIKVSLNE-IDAIG 59
Query: 67 HHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEIRKTSIEEFTSD 126
IY + + A+ + +R ++L+ + ++ G+ +E + T
Sbjct: 60 ---IYIDVRK-----AMKGGRVSEERLKLQLLGNIRRLRINIPGIKLEPTPL---DMTDI 108
Query: 127 FSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPN---ISIIFTGSMPG 183
F L + K +L FDEAQ + + + SY N I +F+GS G
Sbjct: 109 FDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWIRFLFSGSEVG 168
Query: 184 ILIRYLNSEASK-PNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELELERAVKE 242
+L +L + SK P F R TL + +EFL+ GFR + V E +E AV E
Sbjct: 169 LLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQE-HIEVAVDE 227
Query: 243 LGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFINVYSSPIY 302
L G+PG++ YG V+ + A++ L AL RS L E +R E Y
Sbjct: 228 LDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRS-ELSELERRSER---------Y 277
Query: 303 VEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRS---DGKR- 358
V +L+ ++ + E Y E ++ R + K LEK+ +IR+ DG++
Sbjct: 278 VAILKAISLGINRWSKIKE-YVEAKHGSITNARFSALLK---NLEKMSWIRAELKDGRKV 333
Query: 359 YWIEDPLLRIVV 370
Y I DP++ V+
Sbjct: 334 YRIVDPVVERVI 345
>pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (strain Orsay)
>gi|5457727|emb|CAB49218.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 385
Score = 82.7 bits (201), Expect = 7e-15
Identities = 81/315 (25%), Positives = 147/315 (45%), Gaps = 32/315 (10%)
Query: 6 FFSTRPITDEECLWGENHRRIVDELLRATLKGNISVLLGPRRVGKTSVVNVVAGKFIRKR 65
FF RP T E L+G V++L RA G+ +LGPR VGKTS+ A +F ++
Sbjct: 32 FFDQRPRTLPEQLFGREEE--VEKLFRALEAGSWVAVLGPRMVGKTSLALAGANEFAKEN 89
Query: 66 GHHYIYFNF----------SRFIGARAISISDIEPKRTSMKLITTSKSYVLSFKGLSVEI 115
G++ + + + +G SI D + S ++K + GL+V++
Sbjct: 90 GYNVVLVDLRDTETFREATEKILGRLPRSILDSISEYLSSISEVSAKG---AGAGLTVKL 146
Query: 116 RKTSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISI 175
+K ++ + L + +LI DE Q + + + L +++ ++ I
Sbjct: 147 KK------SAPARRALSDALFKVQDTILILDEVQGIQQGVPHFLKALGAVFNENH-SLQI 199
Query: 176 IFTGSMPGILIRYLNSEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELE 235
IFTGS G++ R + S ++ R L W +FL++GF + +E E
Sbjct: 200 IFTGSYSGVVRRLFEATYSDESYGRPPISIMLTPWRESVAEDFLRTGFEKLGVPY-EEWE 258
Query: 236 LERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFIN 295
+ ++ LG +PG+++ YG+ + A+K A+ +A++E++S E + LE
Sbjct: 259 IRDTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKS----ELENILEG--- 311
Query: 296 VYSSPIYVEVLRVLA 310
SP +V+R+LA
Sbjct: 312 --RSPKARKVVRLLA 324
>gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 69.1 bits (166), Expect = 8e-11
Identities = 92/383 (24%), Positives = 173/383 (45%), Gaps = 75/383 (19%)
Query: 27 VDELLRATLKGNISVLLGPRRVGKTSVV------------NVVAGKFIR-KRGHHYIYFN 73
++ LL G L+GPRR+GKTS++ + A +F+R ++G F+
Sbjct: 19 IESLLGLYKLGQPVGLIGPRRIGKTSLLLASLEHSSFPYSLISAEEFVRGEKG-----FD 73
Query: 74 FSRFIGARAISISDIEPKRTSMKLI-TTSKSYVLSFKGLSVEI----------------- 115
F+ F+ A S++ + + K+I KSY+ + L ++
Sbjct: 74 FAEFLSAYITSVTSTIYSKANYKIILEKGKSYLKQLRDLLGQVKVTFNIPELYSTIELTL 133
Query: 116 ----RKTSIEEFTSDFSKLLRILSQ--NAKRGLLIFDEAQVLARLKNLDFRGLIQEITDS 169
+K +E+ D L +ILS+ +R ++ DE Q L RL G+ +
Sbjct: 134 DKAEKKKYLEKEFRDALDLPQILSEKFGLQRVVIAIDEFQYL-RLAKQSIPGIFHIMRSK 192
Query: 170 ---YPNISIIFTGSMPGILIRYLNSEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAY 226
+ N++ + +GS+ G+++ L+S ++P F + + + + + +EFL+ GF
Sbjct: 193 WQFHKNVTYVISGSLIGMMMELLSSR-NQP-FYQFFYLMKVNPFDRKTSIEFLRKGFEVN 250
Query: 227 KIEVNDELELERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEW 286
++V E E+E V ++ G P +++ G+ +V ++ V N+L+K + +
Sbjct: 251 NLDVKSE-EIELIVDQVDGFPAWLNLVGIKIVTEKRSANEVINSLVKDIN-----LVTAL 304
Query: 287 KRDLEAFINVYSSPIYVEVLRVLAKAYPSALRGAEVYKE--LDKMNVAPRRMQHIYKYLD 344
+ DL+ SP VL+ LA +L GA K+ LD + V R ++ + Y
Sbjct: 305 ENDLKRL-----SPTARAVLKNLA-----SLGGAGSPKDLGLDLLTVT-RGLKQLMNY-- 351
Query: 345 TLEKVGFIRSDGKR-YWIEDPLL 366
G + +G+ Y I DP+L
Sbjct: 352 -----GLVEKEGRGIYRIVDPIL 369
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.139 0.402
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133196434
Number of Sequences: 2977
Number of extensions: 5265766
Number of successful extensions: 15966
Number of sequences better than 1.0e-10: 16
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 15914
Number of HSP's gapped (non-prelim): 16
length of query: 388
length of database: 189,106,746
effective HSP length: 56
effective length of query: 332
effective length of database: 155,591,474
effective search space: 51656369368
effective search space used: 51656369368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)