BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1619 1079753 1079133 -207 !not a gene!
(207 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (st... 411 e-114
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 143 1e-33
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st... 134 1e-30
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ... 93 3e-18
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st... 87 2e-16
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st... 85 5e-16
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ... 83 2e-15
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.] 78 1e-13
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ... 77 2e-13
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st... 76 4e-13
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte... 75 9e-13
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha... 74 1e-12
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st... 71 1e-11
>pir||E75092 hypothetical protein PAB1619 - Pyrococcus abyssi (strain Orsay)
>gi|5458554|emb|CAB50042.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 207
Score = 411 bits (1045), Expect = e-114
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MKGFTKGKVFTLVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKY 60
MKGFTKGKVFTLVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKY
Sbjct: 1 MKGFTKGKVFTLVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKY 60
Query: 61 FNIPTPNFSTFSDAFRFVASQSKERLVAYLLRYSDVEAEFQSTVDEILEESNIMLILSAS 120
FNIPTPNFSTFSDAFRFVASQSKERLVAYLLRYSDVEAEFQSTVDEILEESNIMLILSAS
Sbjct: 61 FNIPTPNFSTFSDAFRFVASQSKERLVAYLLRYSDVEAEFQSTVDEILEESNIMLILSAS 120
Query: 121 SMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYL 180
SMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYL
Sbjct: 121 SMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYL 180
Query: 181 ELFEGRNVEEEIKTNFFDPQFLPISRG 207
ELFEGRNVEEEIKTNFFDPQFLPISRG
Sbjct: 181 ELFEGRNVEEEIKTNFFDPQFLPISRG 207
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 143 bits (358), Expect = 1e-33
Identities = 80/193 (41%), Positives = 120/193 (61%), Gaps = 8/193 (4%)
Query: 12 LVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFNIPTPNFSTF 71
LV++ GRRR+GK+ L+++FL+ KR I RR +E +L + ++ L K+F IP +F F
Sbjct: 30 LVVIYGRRRVGKTALLRKFLEEKRGIYFLCSRRGYEKDLKRFSQELSKFFGIPL-SFEDF 88
Query: 72 SDAFRFVASQSKERLVA----YLLR-YSDVEAEFQSTVDEILEESNIMLILSASSMGLLK 126
DAF F++ Q K +V YL+ Y V + FQ VD +LE S +MLIL SS+G+++
Sbjct: 89 EDAFEFLSKQGKLVVVIDEFPYLIESYKPVVSVFQRIVDLVLEGSEVMLILCGSSIGMME 148
Query: 127 RSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYLELFEGR 186
+ Y + LYGR+ + ++P +F + EW+ G E+ V+LY VT G+PRY+E F
Sbjct: 149 KDVLGYKAPLYGRAQGIMKVKPFRFFDMVEWY-GRDFEKLVRLYGVTWGVPRYMEFFR-E 206
Query: 187 NVEEEIKTNFFDP 199
+EEI NFFDP
Sbjct: 207 GSDEEIIRNFFDP 219
>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
>gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 462
Score = 134 bits (333), Expect = 1e-30
Identities = 75/195 (38%), Positives = 116/195 (59%), Gaps = 8/195 (4%)
Query: 10 FTLVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFNIPTPNFS 69
F L +V GRRR+GK+ L+++FL+ KR I +R +E +L + ++ + + P F
Sbjct: 28 FRLFVVYGRRRVGKTALLRKFLENKRGIYFLCSQRGYEKDLKRFSQEISSFIGAPV-RFE 86
Query: 70 TFSDAFRFVASQSKERLV----AYLLRYSD-VEAEFQSTVDEILEESNIMLILSASSMGL 124
+F DAF+F+ Q K ++ YL+ V +EFQ VD +LE S I +IL SS+G+
Sbjct: 87 SFKDAFKFLRGQGKLLVIFDEFPYLIEADKGVISEFQEIVDIVLEGSEITIILCGSSVGM 146
Query: 125 LKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYLELFE 184
++R Y S LYGR+ L ++P +F + EWF G E ++LY VT GIP+Y+E F+
Sbjct: 147 MEREILSYKSPLYGRASGVLKVKPFRFFDMVEWF-GKDFERLLRLYGVTWGIPKYMEFFK 205
Query: 185 GRNVEEEIKTNFFDP 199
++EI NFF+P
Sbjct: 206 -TGSDDEIINNFFNP 219
>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
>gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 456
Score = 92.8 bits (227), Expect = 3e-18
Identities = 58/196 (29%), Positives = 102/196 (51%), Gaps = 12/196 (6%)
Query: 11 TLVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFNIPTPN--- 67
+ V++ GRRR+GK+RL+KEF K KR F + E + + K + ++
Sbjct: 22 SFVVLYGRRRVGKTRLLKEFSKDKRTFFFTFPEAIKEVQMKEFKKTMAEFLGDDFARKLE 81
Query: 68 FSTFSDAFRFVASQSKERLVA-----YLLRYS-DVEAEFQSTVDEILEESNIMLILSASS 121
+ D R++A + + L+ Y ++ + ++ Q T D+IL E +ML++S S
Sbjct: 82 TRDWLDLLRYLAEKVDDCLIVLDEFTYAIKSERKILSDLQRTWDDILSEKKVMLVISGSL 141
Query: 122 MGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYLE 181
+G++ Y+S LYGR ++NL+P + + ++F E +++Y + GIP YL+
Sbjct: 142 LGMMWDDVLSYASPLYGRRTRSMNLKPFDYPNALKFFS--DPEFGIRVYMLVGGIPSYLK 199
Query: 182 LFEGRN-VEEEIKTNF 196
L N VEE I+ F
Sbjct: 200 LAGRYNTVEEFIREEF 215
>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
>gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 472
Score = 87.0 bits (212), Expect = 2e-16
Identities = 63/204 (30%), Positives = 105/204 (50%), Gaps = 17/204 (8%)
Query: 11 TLVLVTGRRRIGKSRLVKEFLKGKRAISV----QFERRLWEYNLMKLNKALGKYFN-IPT 65
+ V+V GRRR+GK+ LV+EFLKGK I + + E L E ++ AL Y
Sbjct: 30 SFVVVYGRRRVGKTALVREFLKGKLGIYLFVGEKDEALLLEDFTREVEMALSSYLPPYVR 89
Query: 66 PNFSTFSDAFRFVASQSKERLVAYLL----RYSDVEAEFQSTVDEIL----EESNIMLIL 117
FS+ + F F+ S++ + +L + V+ S++ ++ E+SN++LI
Sbjct: 90 LRFSSLEELFEFLFDFSRDIKLVIILDEFQNFRSVKPSLFSSLQKLWDLKGEDSNVVLIA 149
Query: 118 SASSMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIP 177
S +G++KR F D L+GR D + L+P F + F I A + V+++S G+P
Sbjct: 150 VGSYVGMMKRIFMDRKEPLFGRVDEWIKLKPFDFWRAYN-FVNIPARDFVEIFSALGGMP 208
Query: 178 R---YLELFEGRNVEEEIKTNFFD 198
+ YL + N E +++ FFD
Sbjct: 209 KYLLYLRHYYNGNTIETLRSLFFD 232
>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
>gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 85.4 bits (208), Expect = 5e-16
Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 14/180 (7%)
Query: 11 TLVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFNIPTPNFST 70
+LV++ GRRR GK+RL+ EF +GK F E + +L + L ++FN F +
Sbjct: 24 SLVIIYGRRRTGKTRLLVEFSQGKPTFFYTFMEDTRERQIRRLREELAEHFN--DELFLS 81
Query: 71 FSD---AFRFVASQSKERLVAYLLRYS-------DVEAEFQSTVDEILEESNIMLILSAS 120
F+D F+++AS+ E+ + L +S + + Q D + +ML+LS S
Sbjct: 82 FNDWYPLFKYLASKVTEKTLIILDEFSYAIKSDRTIVSALQRAWDHDFSKKPVMLVLSGS 141
Query: 121 SMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYL 180
+G++ YSS LYGR + +L+PL + ++F+ S E +++Y + GIP YL
Sbjct: 142 LIGMMIDEVLSYSSPLYGRRTMSFHLKPLTLFNSLKFFD--SFEVGLEMYMLVGGIPAYL 199
>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
>gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 471
Score = 83.5 bits (203), Expect = 2e-15
Identities = 62/193 (32%), Positives = 92/193 (47%), Gaps = 12/193 (6%)
Query: 12 LVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFNIPTPNFSTF 71
L+++ GRRRIGK+ L+ F + K + + + NL +L + +G + + F
Sbjct: 32 LLIIYGRRRIGKTELLLHFARNKEHVYFLASEKPYRDNLRELQRMMGDFLGDRLFSRVEF 91
Query: 72 SDAFRFVASQSKE----RLVA------YLLR-YSDVEAEFQSTVDEILEESNIMLILSAS 120
SD + SK R+V YL+ Y V + Q D L +S++MLIL S
Sbjct: 92 SDIDELLIEFSKRVQGRRVVLIIDEFPYLIEHYKPVLSLIQRAWDMELSKSDLMLILCGS 151
Query: 121 SMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYL 180
S+ ++ Y S LYGR + L F L E+F S EE VK+Y V GIP YL
Sbjct: 152 SVSSMETEVLGYKSPLYGRRTGQWKVGELPFWSLREFFPSYSTEELVKVYGVLGGIPAYL 211
Query: 181 ELFE-GRNVEEEI 192
F +N +E +
Sbjct: 212 LQFNPEKNFDENV 224
>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
Length = 350
Score = 77.6 bits (188), Expect = 1e-13
Identities = 59/204 (28%), Positives = 101/204 (48%), Gaps = 20/204 (9%)
Query: 11 TLVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKAL------GKYFNIP 64
+L++V GRRR+GK+RL+ E LK + + L+ L+K L ++ P
Sbjct: 32 SLIIVYGRRRVGKTRLIIEALKDTPHVYHLCKEEEPRETLVSLSKKLYHATGDAQFLESP 91
Query: 65 TPNFSTFSDAFRFVASQSKERLVAYLLRYSDVEAEFQSTVDEILEE-----SNIMLILSA 119
S+F + F + + +L + + + +L+E ++L
Sbjct: 92 P---SSFDELFELLGGIG----ITLVLDEFPLLVKNYPRILGLLQEYWDFGEGGSVVLCG 144
Query: 120 SSMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRY 179
SS+ ++K DY S ++GR ++ ++PL+FRH+ E+F G S EE V+ Y V GIP Y
Sbjct: 145 SSVSMMK-GLTDYGSPIHGRRTISVKVKPLEFRHVGEFFPGYSPEELVRAYGVLDGIPEY 203
Query: 180 LELFE-GRNVEEEIKTNFFDPQFL 202
L F+ ++VEE + FF +L
Sbjct: 204 LLRFDPSQSVEENVIREFFGRGYL 227
>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
>gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 496
Score = 76.9 bits (186), Expect = 2e-13
Identities = 54/195 (27%), Positives = 101/195 (51%), Gaps = 12/195 (6%)
Query: 13 VLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFN---IPTPNFS 69
+++ GRRR+GK+ L+ EFL+ + + NL + + L +YFN +
Sbjct: 61 IVIYGRRRVGKTALILEFLRRHGGLYLLARETSEIENLERFSLRLAEYFNDSFLKKNPLR 120
Query: 70 TFSDAFRFVASQSKERLVA------YLLRYSD-VEAEFQSTVDEILEESNIMLILSASSM 122
+ F ++++++++ + YL++ + + + Q + L + I LI+S SS+
Sbjct: 121 SLDAFFEYLSTKAEKPFIIAIDEFPYLVKGNKALPSILQEYWEMKLSKKKIFLIVSGSSV 180
Query: 123 GLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRY-LE 181
+ +R Y S LYGR A L L+PL F + E+ S E+ V++Y + G P Y LE
Sbjct: 181 SMTER-LLGYKSPLYGRRTAQLKLKPLDFFNAREFLPKYSLEDFVRVYGILGGTPAYLLE 239
Query: 182 LFEGRNVEEEIKTNF 196
+ +++EE +K+ F
Sbjct: 240 FSDEKSLEENLKSYF 254
>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
>gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 469
Score = 75.7 bits (183), Expect = 4e-13
Identities = 53/197 (26%), Positives = 96/197 (47%), Gaps = 11/197 (5%)
Query: 13 VLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFN---IPTPNFS 69
+++ GRRRIGK+ L+ E ++ I + NL + ++ + KYF+ + F
Sbjct: 24 IVIYGRRRIGKTALILELIRQYGGIYLLARETSEADNLKRFSERVAKYFDGDLLRKNPFQ 83
Query: 70 TFSDAFRFVASQSKERLVA------YLLRYSDVEAEF-QSTVDEILEESNIMLILSASSM 122
+ F ++ +S ER++ YLL+ + A Q D L +S I LI+ SS+
Sbjct: 84 NWDAFFEYLYQKSGERVIVAIDEFPYLLKGNKALASILQEYWDLKLSKSKIFLIICGSSI 143
Query: 123 GLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYLEL 182
++++ Y S +YGR L L+P+ F ++ E++++ Y + G P YL
Sbjct: 144 TMMEK-LLGYKSPIYGRRTCQLKLKPMDFFSARKFLPRYPIEDSLRAYGILGGTPAYLLK 202
Query: 183 FEGRNVEEEIKTNFFDP 199
F+ + EE ++F P
Sbjct: 203 FDDKKSIEENLLSYFRP 219
>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 458
Score = 74.5 bits (180), Expect = 9e-13
Identities = 54/191 (28%), Positives = 94/191 (48%), Gaps = 12/191 (6%)
Query: 13 VLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFNIPTPNFSTFS 72
+++ GRRR+GK+ L+ EF+ I + NL + + L +YF + F
Sbjct: 24 IVIYGRRRVGKTALLLEFISRHGGIYLLARETSNLENLKRFSDRLSEYFGDDFLKRNPFQ 83
Query: 73 --DAF-RFVASQSKERLVA------YLLRYS-DVEAEFQSTVDEILEESNIMLILSASSM 122
DAF ++ ++ ERLV YL++ + + Q D L I LI+ SS+
Sbjct: 84 NWDAFLEYLNQKATERLVVVIDEFPYLVKGDRSLPSILQEYWDLKLSNGRIFLIICGSSI 143
Query: 123 GLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRY-LE 181
++++ Y S +YGR +NL+P+ F H E+ G S E+ +K Y + G P + LE
Sbjct: 144 SMMEK-LLGYKSPIYGRRTGQINLKPVDFLHAREFLPGYSLEDFIKAYGILGGSPAHLLE 202
Query: 182 LFEGRNVEEEI 192
+ + ++E +
Sbjct: 203 FDDSKTIKENL 213
>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
hypothetical protein MJECL04 - Methanococcus jannaschii
plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
jannaschii predicted coding region MJECL04
[Methanococcus jannaschii]
Length = 439
Score = 73.7 bits (178), Expect = 1e-12
Identities = 51/178 (28%), Positives = 86/178 (47%), Gaps = 13/178 (7%)
Query: 10 FTLVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFNIPTPNFS 69
F +++ GRRRIGK++L + ++ + I + + NL K +Y + P
Sbjct: 21 FEFIVIYGRRRIGKTKLALKSVENREHI---YYLAVEGDNL----KHFKRYASKVEPTIE 73
Query: 70 TFSDAFRFVASQSKERLVAY------LLRYSDVEAEFQSTVDEILEESNIMLILSASSMG 123
+ + + K++++ + +V + FQ VD L+ + LI+ SS+
Sbjct: 74 YAKEDWEAYFNFLKDKIIIIDEFPNLIKENPNVLSLFQRIVDIHLKNTKTKLIILGSSIS 133
Query: 124 LLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPRYLE 181
++ Y S LYGR L ++PLKF+HL E+F EE V++Y GIP YLE
Sbjct: 134 MMGEKVLSYKSPLYGRKTGVLKIKPLKFKHLKEFFPKAIWEELVEIYGFADGIPYYLE 191
>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
>gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 71.0 bits (171), Expect = 1e-11
Identities = 57/182 (31%), Positives = 95/182 (51%), Gaps = 20/182 (10%)
Query: 12 LVLVTGRRRIGKSRLVKEFLKGKRAISVQFERRLWEYNLMKLNKALGKYFN------IPT 65
L+++ GRRRIGK+ L+++FL I + E E L ++ L +YFN P
Sbjct: 28 LIIIYGRRRIGKTYLLQKFLAEVGGIYLLAEES--ETVLEDFSERLAEYFNDPFLKENPL 85
Query: 66 PNFSTFSDAFRFVASQSKERLVAYL--LRY-SDVEAEFQSTV----DEILEESNIMLILS 118
N+ F F ++A +S ERLV + ++Y + + +F ST+ D L ++ IMLIL
Sbjct: 86 RNWGAF---FAYLAGKSSERLVVVIDEVQYIAKSQKDFLSTLQKYWDLYLSDTKIMLILC 142
Query: 119 ASSMGLLKRSFFDYSSLLYGRSDATLNLQPLKFRHLFEWFEGISAEEAVKLYSVTSGIPR 178
S + ++ S +YGR ++ + F + ++ F + AE V +YSV G+P+
Sbjct: 143 GSLVSFME-GILSAKSPIYGRRTGAWKVEEMDFFNAWK-FHDVDAETVVHIYSVFGGVPQ 200
Query: 179 YL 180
YL
Sbjct: 201 YL 202
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.139 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68409394
Number of Sequences: 2977
Number of extensions: 2577879
Number of successful extensions: 7543
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7523
Number of HSP's gapped (non-prelim): 17
length of query: 207
length of database: 189,106,746
effective HSP length: 55
effective length of query: 152
effective length of database: 156,189,961
effective search space: 23740874072
effective search space used: 23740874072
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)