BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1620 (PAB1620) DE:Hypothetical protein
(243 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (st... 501 e-141
pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (st... 267 8e-71
pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii ... 258 5e-68
pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii ... 242 2e-63
pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (st... 236 2e-61
pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii ... 232 3e-60
pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (st... 232 3e-60
pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii ... 228 5e-59
pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii ... 228 7e-59
pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (st... 224 1e-57
pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (st... 221 5e-57
pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii ... 212 3e-54
gi|10954496 M. jannaschii predicted coding region MJECL04 [Metha... 210 2e-53
pir||G69123 conserved hypothetical protein MTH196 - Methanobacte... 208 5e-53
pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (st... 170 2e-41
pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii ... 148 8e-35
pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (st... 147 1e-34
emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.] 95 9e-19
sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir... 91 1e-17
gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfat... 82 9e-15
pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii ... 78 1e-13
>pir||D75092 hypothetical protein PAB1620 - Pyrococcus abyssi (strain Orsay)
>gi|5458553|emb|CAB50041.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 243
Score = 501 bits (1276), Expect = e-141
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MTPNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRIL 60
MTPNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRIL
Sbjct: 1 MTPNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRIL 60
Query: 61 EDLDILKRELPIGKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQ 120
EDLDILKRELPIGKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQ
Sbjct: 61 EDLDILKRELPIGKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQ 120
Query: 121 YLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWK 180
YLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWK
Sbjct: 121 YLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWK 180
Query: 181 ELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDFGEPL 240
ELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDFGEPL
Sbjct: 181 ELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDFGEPL 240
Query: 241 AIH 243
AIH
Sbjct: 241 AIH 243
>pir||G75100 hypothetical protein PAB1582 - Pyrococcus abyssi (strain Orsay)
>gi|5458620|emb|CAB50108.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 462
Score = 267 bits (676), Expect = 8e-71
Identities = 127/235 (54%), Positives = 173/235 (73%), Gaps = 1/235 (0%)
Query: 3 PNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILED 62
P++FLF EA+ LL EE R P Y ++EA+A KTR+NEIAQY +E K+ + YLR+L +
Sbjct: 219 PSAFLFNEARLLLMEELRNPTRYMQIIEAIAMGKTRLNEIAQYVGIEAKDLSTYLRVLSN 278
Query: 63 LDILKRELPIG-KKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQY 121
L I++RE+PI +KAK+GIY D YF F+ RFV+P++EEI+S E A+ DF F+ Y
Sbjct: 279 LGIVRREVPITERKAKRGIYVIEDEYFRFYHRFVSPHYEEIDSLNPEPAIRDFLRNFNTY 338
Query: 122 LGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKE 181
LG FE++ R+FLIE+ + G LPF F +IG+WW + EEID++ALN EKKVLLVEVKWKE
Sbjct: 339 LGKTFEKVAREFLIEVNKHGGLPFKFMEIGKWWQRSEEIDLLALNRGEKKVLLVEVKWKE 398
Query: 182 LRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
L ++EAR +L+DLERK + + L W+K Y L+AK ++ K LK EGW +WDL+DF
Sbjct: 399 LGEKEARGVLKDLERKGELVGLENWQKYYGLIAKGIKCKELLKSEGWLLWDLKDF 453
>pir||E71154 hypothetical protein PH0436 - Pyrococcus horikoshii
>gi|3256839|dbj|BAA29522.1| (AP000002) 452aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 452
Score = 258 bits (652), Expect = 5e-68
Identities = 123/235 (52%), Positives = 170/235 (72%), Gaps = 8/235 (3%)
Query: 3 PNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILED 62
P+SFLF EAK LL EE R P Y ++EA+A TR++EIA Y+ ++ K+ YL+ L++
Sbjct: 219 PSSFLFNEAKLLLMEELRNPAVYGEIIEAIALGNTRLSEIANYSMIDAKDLPAYLKTLQE 278
Query: 63 LDILKRELPIGKK-AKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQY 121
L I+KR PI K+ AK+G+Y D YF F++RFV PY+EEIES E A+EDF F+ Y
Sbjct: 279 LGIVKRITPITKRNAKRGVYVIEDEYFRFYYRFVNPYYEEIESLNPEPAIEDFRKNFNSY 338
Query: 122 LGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKE 181
LG FE++ ++FL+ + + + KIG+WW+KGEEID+VALNEREKK L VEVKW+
Sbjct: 339 LGETFEKVSKEFLLAIGD-------YPKIGKWWYKGEEIDLVALNEREKKALFVEVKWRG 391
Query: 182 LRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
L++REA+ IL+ LE+K+ +NL+GW K Y ++A+RVEGK L+ EGW +WDLEDF
Sbjct: 392 LKEREAKRILKRLEKKSMLINLDGWIKDYGVIARRVEGKESLRDEGWLVWDLEDF 446
>pir||D71089 hypothetical protein PH0977 - Pyrococcus horikoshii
>gi|3257391|dbj|BAA30074.1| (AP000004) 496aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 496
Score = 242 bits (612), Expect = 2e-63
Identities = 116/234 (49%), Positives = 157/234 (66%), Gaps = 2/234 (0%)
Query: 4 NSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDL 63
+S L+ +A +L EE EP Y+ ++EA+AR T + EI LE +YL +L DL
Sbjct: 257 DSLLYGDALFILREELDEPRNYFAIMEAIARGNTTLGEIVNETGLERATVGKYLSVLIDL 316
Query: 64 DILKRELPI--GKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQY 121
D+++RE+PI +K++KG Y D YFAFWFR+V P + IESG E ++ Y
Sbjct: 317 DLVRREVPITASRKSRKGRYYIADNYFAFWFRYVYPNADLIESGNGELLVDTVMDDIDHY 376
Query: 122 LGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKE 181
G FE + ++FL+ L + +LPF F+++GRWW+K EEID+VALNEREKKVL +EVKWK+
Sbjct: 377 TGEVFEGVAKEFLLRLNKSERLPFRFSRVGRWWYKNEEIDLVALNEREKKVLFIEVKWKD 436
Query: 182 LRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLED 235
L REAR IL+DL+RKAK + L+ W K Y LVAK V GK ++K EGW WDLED
Sbjct: 437 LSKREARGILKDLKRKAKLVGLDEWGKHYGLVAKSVRGKDEIKEEGWLAWDLED 490
>pir||B75039 hypothetical protein PAB1516 - Pyrococcus abyssi (strain Orsay)
>gi|5458720|emb|CAB50207.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 469
Score = 236 bits (595), Expect = 2e-61
Identities = 111/236 (47%), Positives = 156/236 (66%), Gaps = 2/236 (0%)
Query: 3 PNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILED 62
P+SFL+++A +L EE EP Y+ ++EA+A+ T + EI L+ +YL +L D
Sbjct: 219 PDSFLYQDALFILREELNEPRNYFAIMEAIAKGCTSLGEIMNETVLDRFTVGKYLSVLID 278
Query: 63 LDILKRELPIGK--KAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQ 120
LD+++RE+PI + K++KG Y D YFAFWFR+V P + IE+G + ++ F Q
Sbjct: 279 LDLVRREVPITESWKSRKGRYYINDPYFAFWFRYVLPNVDLIETGQGDLLVKIVMEDFDQ 338
Query: 121 YLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWK 180
YL G FE++ RQFL+ L + L F KIGRWWHKGEEID+VALNE +K VL VEV+WK
Sbjct: 339 YLDGVFEDVTRQFLVRLNKESLLTPSFIKIGRWWHKGEEIDLVALNEHKKSVLFVEVRWK 398
Query: 181 ELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
EL + E R +R L +KA+ + L W++ Y LV KR+ GK L+ EGW +WDL+DF
Sbjct: 399 ELSENETRKTIRKLMKKAQLVGLENWKEYYGLVGKRIRGKEKLRSEGWLVWDLKDF 454
>pir||C71071 hypothetical protein PH1263 - Pyrococcus horikoshii
>gi|3257682|dbj|BAA30365.1| (AP000005) 320aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 320
Score = 232 bits (586), Expect = 3e-60
Identities = 120/238 (50%), Positives = 155/238 (64%), Gaps = 4/238 (1%)
Query: 3 PNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILED 62
P SF E LL EF E TY +LEA+A KT + EI + L + YLR L +
Sbjct: 75 PISFFKDEVDFLLRYEFSEVTTYKRILEAIALGKTTLKEIKDFTGLRNSDITPYLRNLIE 134
Query: 63 LDILKRELPIGKK--AKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQ 120
D++ RE+PI +K +KKG Y D + AFWFRF+ P IE G +++ + +
Sbjct: 135 ADLIVREVPITEKKTSKKGRYYVLDNFLAFWFRFIYPNLSRIEEGIFN--VDEIKGEYPR 192
Query: 121 YLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWK 180
YLG FE+I RQFLIEL ++ KLPF F KIGRWW+K EEIDIVALNEREKK LLVEVKWK
Sbjct: 193 YLGWVFEKIARQFLIELNKINKLPFKFEKIGRWWYKEEEIDIVALNEREKKGLLVEVKWK 252
Query: 181 ELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDFGE 238
L++REAR+IL L +K+K + L GWEK Y L+A+ ++ K L +G+ +WDLEDF E
Sbjct: 253 TLKEREAREILEVLNKKSKLLGLEGWEKYYGLIAREIKRKEPLIEDGYLVWDLEDFEE 310
>pir||A75097 hypothetical protein PAB1598 - Pyrococcus abyssi (strain Orsay)
>gi|5458590|emb|CAB50078.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 232 bits (586), Expect = 3e-60
Identities = 115/231 (49%), Positives = 155/231 (66%), Gaps = 4/231 (1%)
Query: 8 FREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDLDILK 67
+ E K LL++E R+ Y+++L A+A TR +IA A +E K+ A+YL +L ++ ++
Sbjct: 227 YDEPKYLLKQELRDVSRYFSILRAIALGYTRFGQIADKARIEAKSLAKYLHVLSEMGYIE 286
Query: 68 RELPIGKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQYLGGAFE 127
E P+ K + IYR RD FAFWFRFV P EIE GF +E+ F+ YLG AFE
Sbjct: 287 EETPVIGKGRT-IYRIRDNLFAFWFRFVYPRRSEIEMGFD--VVEEIKGEFNDYLGKAFE 343
Query: 128 EIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKELRDREA 187
I RQFL+ L +G+LPF FTKIGRWWH+GEE+DIVA+NE EKK +LV V+WK L ++
Sbjct: 344 GIARQFLVRLNTLGRLPFRFTKIGRWWHRGEEVDIVAINESEKKAMLVNVEWKNLDGKDV 403
Query: 188 RDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDFGE 238
R IL DL RK++ + L GWEK Y +VA+ V+GK DL+ + IWDL DF E
Sbjct: 404 RRILGDLRRKSELIGLEGWEKHYAIVARDVQGKEDLE-DNSHIWDLRDFEE 453
>pir||C71089 hypothetical protein PH0976 - Pyrococcus horikoshii
>gi|3257390|dbj|BAA30073.1| (AP000004) 471aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 471
Score = 228 bits (575), Expect = 5e-59
Identities = 110/243 (45%), Positives = 159/243 (65%), Gaps = 7/243 (2%)
Query: 1 MTPNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRIL 60
++ +FL+ EA+ LL+EE REP Y+ +L+A+A ++R EI L+ ++YL +L
Sbjct: 229 LSKGAFLYEEAEILLKEEMREPANYFIILQAIASGRSRFGEIVNATGLDKSLVSKYLNVL 288
Query: 61 EDLDILKRELPIG----KKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNA 116
E L +++RE+P+ + K+G Y D Y AFWFR+V P +E+G + E
Sbjct: 289 EKLGMVEREVPVTASRKEALKRGRYSITDNYLAFWFRYVLPNKSYLEAGLGKEIWERSKE 348
Query: 117 GFSQYLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVE 176
F +Y+GG FE ++R+ + K F F+++GRWW+K EEID+VALNEREKKVL +E
Sbjct: 349 DFKEYMGGVFERLLRKPEVFTK---LTDFRFSRVGRWWYKNEEIDLVALNEREKKVLFIE 405
Query: 177 VKWKELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
VKWK+L REAR IL+DLERKAK + L+ WEK Y LV K +EGK L+ E + +WDL+DF
Sbjct: 406 VKWKDLSKREARGILKDLERKAKLVELDNWEKYYGLVTKSLEGKEKLREESYLVWDLKDF 465
Query: 237 GEP 239
+P
Sbjct: 466 EDP 468
>pir||B71133 hypothetical protein PH0830 - Pyrococcus horikoshii
>gi|3257241|dbj|BAA29924.1| (AP000003) 319aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 319
Score = 228 bits (574), Expect = 7e-59
Identities = 110/229 (48%), Positives = 153/229 (66%), Gaps = 3/229 (1%)
Query: 8 FREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDLDILK 67
+ E K LL+EE R+ Y+++L A++ +R +IA A +E K+ +YL +LE++ ++
Sbjct: 90 YDEPKYLLKEELRDVSRYFSILRAISLGYSRFGQIADAARIETKSLGKYLNVLEEMGYIR 149
Query: 68 RELPIGKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQYLGGAFE 127
E PI + K +Y+ + +F FWFRFV P EIE GF +E+ F+ YLG FE
Sbjct: 150 EEKPIVGRGKT-VYKINEHFFNFWFRFVFPRRSEIEMGFD--VVEEIKKEFNNYLGPVFE 206
Query: 128 EIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKELRDREA 187
EI RQFLIE+ + KLPF FTKIGRWW+KGEEID+VALNE EKK L +EVKWK L +EA
Sbjct: 207 EISRQFLIEMNKRKKLPFRFTKIGRWWYKGEEIDLVALNEDEKKALFIEVKWKNLERKEA 266
Query: 188 RDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
IL+DL+RKA+ L+ W K+Y ++AK + K +L+ EG+ WDL DF
Sbjct: 267 YKILKDLKRKAELTGLHDWNKAYGIIAKSIMEKEELREEGFLAWDLRDF 315
>pir||F75049 hypothetical protein PAB2383 - Pyrococcus abyssi (strain Orsay)
>gi|5458804|emb|CAB50291.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 459
Score = 224 bits (564), Expect = 1e-57
Identities = 113/230 (49%), Positives = 148/230 (64%), Gaps = 2/230 (0%)
Query: 6 FLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDLDI 65
F + E LL E RE +TY+++L A A KTR +EIA YA LE + YL L L
Sbjct: 222 FFYDEPYILLSGELRELKTYFSILSATASGKTRASEIASYAGLEGRKIYPYLDTLVRLGF 281
Query: 66 LKRELPIGKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQYLGGA 125
++RE+PI + K+GIY+ +D WF V IE G + +D + G
Sbjct: 282 IEREIPIARNDKRGIYKLKDPMLLTWFSIVPKNRTGIELGII--SYDDVKEDIQRIYGIR 339
Query: 126 FEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKELRDR 185
FE++ R+FL+EL G+LPF FT+IGRWW+KGEEIDIVA+NER K++LL EVKWKEL R
Sbjct: 340 FEDVAREFLVELNRRGRLPFRFTRIGRWWYKGEEIDIVAVNERLKRILLAEVKWKELSKR 399
Query: 186 EARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLED 235
EA+ IL+DL+RK K MNL GW+ S+ LVAK V GK L+ G+ +WDLED
Sbjct: 400 EAKGILKDLKRKFKLMNLEGWDASFALVAKNVHGKSKLREYGFNVWDLED 449
>pir||F75131 hypothetical protein PAB0571 - Pyrococcus abyssi (strain Orsay)
>gi|5458278|emb|CAB49767.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 451
Score = 221 bits (558), Expect = 5e-57
Identities = 112/238 (47%), Positives = 154/238 (64%), Gaps = 10/238 (4%)
Query: 1 MTPNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRIL 60
++P SF E LL+ EF E Y +LEA+A KT + EI + + + YLR L
Sbjct: 206 LSPLSFFKDEVDFLLKYEFTETRVYRRILEAIALGKTTIKEIKDFTGMRHSDITPYLRNL 265
Query: 61 EDLDILKRELPIGKK--AKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGF 118
+ D++ RE+PI +K +K+G Y D + AFWFR++ P IE G ++E+ +
Sbjct: 266 LETDLVVREVPITEKPYSKRGRYYLADNFLAFWFRYIYPNLSRIEEGTF--SIEEIRGDY 323
Query: 119 SQYLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVK 178
SQYLG FE++ RQFL+ KL +FTKIGRWWHK +EIDIVALNER K VL EVK
Sbjct: 324 SQYLGWVFEKVARQFLL------KLNINFTKIGRWWHKDKEIDIVALNERGKGVLFAEVK 377
Query: 179 WKELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
WK+L+++EA ILR+LE+K K L+ WEKSY L+A+ +EGK +LK +G+ +WDL DF
Sbjct: 378 WKKLKEKEAEKILRELEKKGKLTGLDDWEKSYGLIARNIEGKENLKGKGYLVWDLRDF 435
>pir||E71134 hypothetical protein PH0841 - Pyrococcus horikoshii
>gi|3257252|dbj|BAA29935.1| (AP000003) 323aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 323
Score = 212 bits (535), Expect = 3e-54
Identities = 104/236 (44%), Positives = 151/236 (63%), Gaps = 3/236 (1%)
Query: 1 MTPNSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRIL 60
+TP + + E +L E +E +TY+++L A++ + R +EIA LE + YL L
Sbjct: 83 LTPEGYFYDEPYIVLSE-LKELKTYFSILSAMSSGRRRPSEIASEVGLEGRKIYPYLETL 141
Query: 61 EDLDILKRELPIGKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQ 120
L ++RELPI +K K+G+YR D WF + P EIE G LE +
Sbjct: 142 IRLGFVERELPIARKEKRGLYRISDPMLMSWFSLIYPNRTEIELGTI--TLERVEKILQR 199
Query: 121 YLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWK 180
FE++ R+FL+E+ + GKLPF FTKIGRWW+KGEEID+VALNE E+K L +EVKWK
Sbjct: 200 IFSFRFEDVSREFLVEMNKAGKLPFRFTKIGRWWYKGEEIDLVALNEDEEKALFIEVKWK 259
Query: 181 ELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
+L++RE + IL+DLE+KA + L+GW+K+Y L+ K +E K L+ E + +WDL+DF
Sbjct: 260 DLKEREVKGILKDLEKKAGLVGLDGWDKNYGLIEKSIERKEKLREENYLVWDLKDF 315
>gi|10954496 M. jannaschii predicted coding region MJECL04 [Methanococcus
jannaschii] >gi|2496210|sp|Q60260|YZ04_METJA
HYPOTHETICAL PROTEIN MJECL04 >gi|2129021|pir||D64510
hypothetical protein MJECL04 - Methanococcus jannaschii
plasmid pURB800 >gi|1500652|gb|AAC37078.1| (L77118) M.
jannaschii predicted coding region MJECL04
[Methanococcus jannaschii]
Length = 439
Score = 210 bits (528), Expect = 2e-53
Identities = 104/235 (44%), Positives = 155/235 (65%), Gaps = 7/235 (2%)
Query: 4 NSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDL 63
+SFL E L++ EF EP TY +LEA+A + EI Y + + YL+ L ++
Sbjct: 209 DSFLRYEVDFLMKYEFEEPTTYKKILEAIAFGNHTLGEIKNYLGFKHSDLTPYLKNLIEV 268
Query: 64 DILKRELPIGK--KAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQY 121
+ ++R+ PI + K+KKG Y +D + AF+FR++ P IE G + +E+ A ++QY
Sbjct: 269 EFIERQTPITESVKSKKGRYYIKDNFIAFYFRYIFPNLSAIEEGIFD--IEEIKADYNQY 326
Query: 122 LGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKE 181
LG FE++ ++FLIEL +M KLPF F KIGRWWH+GEEID++ALN+ +KK L VEVKWK+
Sbjct: 327 LGFVFEKVAKEFLIELNKMNKLPFKFLKIGRWWHRGEEIDLIALNDNDKKALFVEVKWKD 386
Query: 182 LRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
L+DR+ + I RDL RK+K + L+ +EK Y +V K++E K + ++DLEDF
Sbjct: 387 LKDRDVKKIYRDLYRKSKLVGLDDYEKYYAIVGKKIESK---ENGDCLLFDLEDF 438
>pir||G69123 conserved hypothetical protein MTH196 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621241|gb|AAB84702.1| (AE000807) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 458
Score = 208 bits (524), Expect = 5e-53
Identities = 107/234 (45%), Positives = 148/234 (62%), Gaps = 6/234 (2%)
Query: 4 NSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDL 63
+S L+++A +L EE EP Y+ ++EAVA KT + EI L A+YL +L +L
Sbjct: 220 DSLLYQDAFFVLREELEEPRNYFAIMEAVAAGKTSLGEIMNETGLSRATVAKYLSVLIEL 279
Query: 64 DILKRELPI--GKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQY 121
D +KRE+PI +K+++G Y +D YFAFWFR++ P + IES + LE Y
Sbjct: 280 DFVKREIPITASRKSRRGRYYIKDNYFAFWFRYIHPNIDFIESERRKELLELIIDDLPNY 339
Query: 122 LGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKE 181
LGG FE + +FL + KLPF KIGRWWHK EEID+VA NE+E+K +L+EVKWK
Sbjct: 340 LGGIFENVAIEFLPLISN--KLPFKPLKIGRWWHKNEEIDLVAFNEKEEKAILIEVKWKT 397
Query: 182 LRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLED 235
L EA IL+DL RK+K + + WE+ + ++AKRV+ K +K G IWDLED
Sbjct: 398 LNKIEANKILKDLNRKSKILKMKEWEQYHGIIAKRVKDKEKIK--GGLIWDLED 449
>pir||D75058 hypothetical protein PAB1413 - Pyrococcus abyssi (strain Orsay)
>gi|5458874|emb|CAB50361.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 157
Score = 170 bits (426), Expect = 2e-41
Identities = 79/152 (51%), Positives = 107/152 (69%), Gaps = 3/152 (1%)
Query: 85 DLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQYLGGAFEEIVRQFLIELKEMGKLP 144
D YFAFWFR+V P +E+G +E E F+ YLG FE++VR + L+ G
Sbjct: 4 DNYFAFWFRYVLPNKVYLEAGLAEDVWERSKDDFNIYLGLIFEKLVRNPEVFLRLTG--- 60
Query: 145 FHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKELRDREARDILRDLERKAKFMNLN 204
FHFTK+GRWW +GEE++++ALNEREKK LL+EVKWKEL REA+ ILRDL RKA+ + L+
Sbjct: 61 FHFTKLGRWWRRGEEVNVLALNEREKKALLIEVKWKELSKREAKGILRDLGRKAELVGLD 120
Query: 205 GWEKSYRLVAKRVEGKRDLKREGWFIWDLEDF 236
W++ Y +VAK+++ +L+ EGW WDL DF
Sbjct: 121 SWKRFYGVVAKKIDDMEELREEGWLAWDLRDF 152
>pir||B71135 hypothetical protein PH0846 - Pyrococcus horikoshii
>gi|3257257|dbj|BAA29940.1| (AP000003) 456aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 456
Score = 148 bits (369), Expect = 8e-35
Identities = 87/230 (37%), Positives = 129/230 (55%), Gaps = 16/230 (6%)
Query: 6 FLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDLDI 65
F + E LL EE RE +TY+++L A+A R+ IA + L ++ Y+ L L +
Sbjct: 221 FFYDEPYVLLGEELRELKTYFSILRAIAEGNRRLERIANFIGLPMRSVYPYVDTLVRLGL 280
Query: 66 LKRELPIGKKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQYLGGA 125
++RE PI K +YR +D WF P EI SG ++ L+ +S
Sbjct: 281 VERESPILGSRKVSLYRIKDPMLLTWFTLTYPQMAEISSGTAK--LDSLYKVYSI----R 334
Query: 126 FEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKELRDR 185
FEE+ ++FL + P F +GRWW++GEEIDIVAL R+ K L+EVKWK+L R
Sbjct: 335 FEELAKEFLTLFR-----PIEFETLGRWWYRGEEIDIVAL--RKDKTTLIEVKWKDLSKR 387
Query: 186 EARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWFIWDLED 235
A +LR+LE K++ ++ ++ L+AK V GK L+ EG+ +WDLED
Sbjct: 388 SALRVLRELEEKSEKLHP---IENIGLIAKSVRGKEKLREEGYLVWDLED 434
>pir||C75064 hypothetical protein PAB1371 - Pyrococcus abyssi (strain Orsay)
>gi|5458921|emb|CAB50408.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 472
Score = 147 bits (367), Expect = 1e-34
Identities = 91/246 (36%), Positives = 133/246 (53%), Gaps = 19/246 (7%)
Query: 2 TPNSFLFREAKELLEEEF--------REPETYYTLLEAVAREKTRVNEIAQYAFLEPKNT 53
T S F E L EE F R +Y+++LEAV+ EI+ L+
Sbjct: 225 TLRSLFFDELSPLREEGFNVLKLEFGRYYRSYFSILEAVSLGYVTPKEISDKTGLKILTV 284
Query: 54 ARYLRILED-LDILKRELPIG---KKAKKGIYRFRDLYFAFWFRFVAPYFEEIESGFSEG 109
+YL L + + L +E+P +K +K Y RD +F FWFRFV + +E G
Sbjct: 285 GKYLSELTNHYEYLGKEVPATEDPRKTRKVSYFIRDEFFNFWFRFVYHNIQYLEEGEITK 344
Query: 110 ALEDFNAGFSQYLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNERE 169
L D F ++G +E I R+F+ + L F ++GRWWHKGEEID++A N E
Sbjct: 345 VLNDLRENFPAFVGKEYERIGREFIRRI----DLGFSPLRVGRWWHKGEEIDVIAYN--E 398
Query: 170 KKVLLVEVKWKELRDREARDILRDLERKAKFMNLNGWEKSYRLVAKRVEGKRDLKREGWF 229
+KV L EVKW +L A+ +LRDLERK + + L G E+ Y L+++ VEGK +L+ G+
Sbjct: 399 EKVALFEVKWSDLSKARAKRLLRDLERKGELVPLRG-ERVYGLISREVEGKEELRNCGYL 457
Query: 230 IWDLED 235
++DL D
Sbjct: 458 VFDLND 463
>emb|CAA70312.1| (Y09097) hypothetical protein [Thermococcus sp.]
Length = 350
Score = 94.8 bits (232), Expect = 9e-19
Identities = 52/123 (42%), Positives = 75/123 (60%), Gaps = 5/123 (4%)
Query: 6 FLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDLDI 65
+L+ EA+ LL E R+ TY T+LEA+A T NEI ++ +RYL LE+L++
Sbjct: 226 YLYEEAELLLRYELRDLSTYNTILEAIAAGYTSFNEIKTKTGMDGSKLSRYLSTLEELEL 285
Query: 66 LKRELPI----GKKAKKGI-YRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQ 120
+KRE P+ K+ +KG Y D YFAF++ FV P+ EEIE G + LE+F F++
Sbjct: 286 VKREYPVLPGAAKRRRKGARYGLSDNYFAFYYSFVYPFKEEIELGLLDVPLENFRRKFNR 345
Query: 121 YLG 123
YLG
Sbjct: 346 YLG 348
>sp|Q57868|Y425_METJA HYPOTHETICAL PROTEIN MJ0425 >gi|2128315|pir||A64353 hypothetical
protein MJ0425 - Methanococcus jannaschii
>gi|1591128|gb|AAB98412.1| (U67494) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 140
Score = 90.9 bits (222), Expect = 1e-17
Identities = 50/130 (38%), Positives = 75/130 (57%), Gaps = 7/130 (5%)
Query: 95 VAPYFEEIESGFSEGALEDFNAGFSQYLGGAFEEIVRQFLIELKEMGKLPFHFTKIGRWW 154
V P ++E G + A ++Y G FE +V E+ ++ + F + +WW
Sbjct: 5 VYPNMADLEIGNVKEVYNKILASLNEYYGKMFENLV----FEMLKLKIIDFGQKSVAKWW 60
Query: 155 HKGEEIDIVALNEREKKVLLVEVKWKELRDREARDILRDLERKAKFMNLNGWEKSYRLVA 214
HKGEEID++A N K++ EVKWK+L +EA+ ILRDLERK ++ +G EK ++A
Sbjct: 61 HKGEEIDVLAYNNN--KMIAFEVKWKDLSFKEAKGILRDLERKLDKVDFDG-EKECYIIA 117
Query: 215 KRVEGKRDLK 224
K +EGK LK
Sbjct: 118 KSIEGKEKLK 127
>gb|AAK42111.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 420
Score = 81.5 bits (198), Expect = 9e-15
Identities = 66/213 (30%), Positives = 104/213 (47%), Gaps = 26/213 (12%)
Query: 4 NSFLFREAKELLEEEFREPETYYTLLEAVAREKTRVNEIAQYAFLEPKNTARYLRILEDL 63
+SF+ E +L EF E TY +L A++ K + EI + + + + YL LE +
Sbjct: 210 DSFIKDEIDFMLRYEFSEIGTYKEILHAISSGKNTLGEIKDFVRISG-DVSSYLNKLEKI 268
Query: 64 DILKRELPIGKKAKKGI-YRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQYL 122
I+ +E P K KKG Y +D + FWF F+ P IE G E +++N YL
Sbjct: 269 GIIGKEFPY--KMKKGARYYIKDNFTLFWFTFIYPNLSLIEEGIYEIKEDEYNV----YL 322
Query: 123 GGAFEEIVRQFLIELKEMGKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKEL 182
G FE+I R+++ ++ ++ K+ R W K EIDI + E KW E
Sbjct: 323 GRIFEKIAREYVEDVYKV--------KVERLWFKDVEIDIYG------DGIAGECKWSEG 368
Query: 183 RDREARDILRDLERKAKFMNLNGWEKSYRLVAK 215
+ E +L +L+RK + + L+ K Y + AK
Sbjct: 369 INGE--KVLYELKRKVEDLGLD--VKKYIIFAK 397
>pir||H71134 hypothetical protein PH0844 - Pyrococcus horikoshii
>gi|3257255|dbj|BAA29938.1| (AP000003) 103aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 103
Score = 78.0 bits (189), Expect = 1e-13
Identities = 42/108 (38%), Positives = 58/108 (52%), Gaps = 9/108 (8%)
Query: 81 YRFRDLYFAFWFRFVAPYFEEIESGFSEGALEDFNAGFSQYLGGAFEEIVRQFLIELKEM 140
Y D Y+AFWFRFV P + +E + ALE ++ Y+G FE+ FL +
Sbjct: 3 YEIADNYYAFWFRFVYPNRKLVERELYKEALELVKRDYNHYMGRVFEKASLDFLWK---- 58
Query: 141 GKLPFHFTKIGRWWHKGEEIDIVALNEREKKVLLVEVKWKELRDREAR 188
F F + GRWW + EEID+V + + EVKWK+L +REAR
Sbjct: 59 ---RFAFERAGRWWSREEEIDVVGV--KRGMAYFFEVKWKDLSEREAR 101
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.142 0.429
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92272380
Number of Sequences: 2977
Number of extensions: 3859248
Number of successful extensions: 10136
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 10082
Number of HSP's gapped (non-prelim): 22
length of query: 243
length of database: 189,106,746
effective HSP length: 51
effective length of query: 192
effective length of database: 158,583,909
effective search space: 30448110528
effective search space used: 30448110528
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)