BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1621 (PAB1621) DE:Hypothetical protein
         (136 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75092 hypothetical protein PAB1621 - Pyrococcus abyssi (st...   299  1e-80
pir||C71051 hypothetical protein PH1106 - Pyrococcus horikoshii ...   133  8e-31

>pir||A75092 hypothetical protein PAB1621 - Pyrococcus abyssi (strain Orsay)
           >gi|5458550|emb|CAB50038.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 136
           
 Score =  299 bits (757), Expect = 1e-80
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MKGRRKRGLKTSLNNLGKCEPLLHGIYHDFHFIPDLGVGDEDNETLYPCYSISTFSHAFY 60
           MKGRRKRGLKTSLNNLGKCEPLLHGIYHDFHFIPDLGVGDEDNETLYPCYSISTFSHAFY
Sbjct: 1   MKGRRKRGLKTSLNNLGKCEPLLHGIYHDFHFIPDLGVGDEDNETLYPCYSISTFSHAFY 60

Query: 61  LYLIPFANLNWSFHPSSFISSKLPLSTFSTVHFQHIHPAWTRHSEECLVRAKCGVTVYKH 120
           LYLIPFANLNWSFHPSSFISSKLPLSTFSTVHFQHIHPAWTRHSEECLVRAKCGVTVYKH
Sbjct: 61  LYLIPFANLNWSFHPSSFISSKLPLSTFSTVHFQHIHPAWTRHSEECLVRAKCGVTVYKH 120

Query: 121 FYGQKVGKTSPRKPRG 136
           FYGQKVGKTSPRKPRG
Sbjct: 121 FYGQKVGKTSPRKPRG 136


>pir||C71051 hypothetical protein PH1106 - Pyrococcus horikoshii
          >gi|3257522|dbj|BAA30205.1| (AP000005) 115aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 115
          
 Score =  133 bits (332), Expect = 8e-31
 Identities = 62/97 (63%), Positives = 73/97 (74%)

Query: 1  MKGRRKRGLKTSLNNLGKCEPLLHGIYHDFHFIPDLGVGDEDNETLYPCYSISTFSHAFY 60
          MK R+K+ LK SLNN  +C+P  H +YHD  FI +  +G E  + LYPCYSIS+F H F 
Sbjct: 1  MKKRKKQELKISLNNFRECKPPFHRVYHDLDFISNFRMGYEYYKPLYPCYSISSFPHTFN 60

Query: 61 LYLIPFANLNWSFHPSSFISSKLPLSTFSTVHFQHIH 97
          LYLIPF+NLNWSFH SS ISSK PLSTFST+H QHIH
Sbjct: 61 LYLIPFSNLNWSFHLSSSISSKSPLSTFSTIHLQHIH 97


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.140    0.461 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56782084
Number of Sequences: 2977
Number of extensions: 2305799
Number of successful extensions: 3462
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3460
Number of HSP's gapped (non-prelim): 2
length of query: 136
length of database: 189,106,746
effective HSP length: 46
effective length of query: 90
effective length of database: 161,576,344
effective search space: 14541870960
effective search space used: 14541870960
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 161 (67.1 bits)