BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1622 (PAB1622) DE:Hypothetical protein
         (305 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75091 hypothetical protein PAB1622 - Pyrococcus abyssi (st...   634  0.0
pir||D71051 hypothetical protein PH1107 - Pyrococcus horikoshii ...   437  e-122
pir||E72203 conserved hypothetical protein - Thermotoga maritima...   203  3e-51
pir||B72278 conserved hypothetical protein - Thermotoga maritima...    92  1e-17

>pir||H75091 hypothetical protein PAB1622 - Pyrococcus abyssi (strain Orsay)
           >gi|5458549|emb|CAB50037.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 305
           
 Score =  634 bits (1617), Expect = 0.0
 Identities = 305/305 (100%), Positives = 305/305 (100%)

Query: 1   MLKKMPKPIIVPSENGFDSRCSYNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVS 60
           MLKKMPKPIIVPSENGFDSRCSYNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVS
Sbjct: 1   MLKKMPKPIIVPSENGFDSRCSYNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVS 60

Query: 61  FVKHPLPVLEPELGCEIMGVEDPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKV 120
           FVKHPLPVLEPELGCEIMGVEDPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKV
Sbjct: 61  FVKHPLPVLEPELGCEIMGVEDPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKV 120

Query: 121 GAIFDEFPGNYLRPKNWTKSGAILPEKVSGEYVMYFGDSNVWIAYSDDGLNWEYEREPVM 180
           GAIFDEFPGNYLRPKNWTKSGAILPEKVSGEYVMYFGDSNVWIAYSDDGLNWEYEREPVM
Sbjct: 121 GAIFDEFPGNYLRPKNWTKSGAILPEKVSGEYVMYFGDSNVWIAYSDDGLNWEYEREPVM 180

Query: 181 KPRKGKFDSLLVEPGSPPVKVGDSIVLIYNSADENLVYRPGIAVFDADDPSRLVWRSEKP 240
           KPRKGKFDSLLVEPGSPPVKVGDSIVLIYNSADENLVYRPGIAVFDADDPSRLVWRSEKP
Sbjct: 181 KPRKGKFDSLLVEPGSPPVKVGDSIVLIYNSADENLVYRPGIAVFDADDPSRLVWRSEKP 240

Query: 241 IMEPEYEWEVKGKVDNVIFVEGLVDLGEKVLLYYGAADKYVGLAIWEGTLRELIEKAGGG 300
           IMEPEYEWEVKGKVDNVIFVEGLVDLGEKVLLYYGAADKYVGLAIWEGTLRELIEKAGGG
Sbjct: 241 IMEPEYEWEVKGKVDNVIFVEGLVDLGEKVLLYYGAADKYVGLAIWEGTLRELIEKAGGG 300

Query: 301 DVIQG 305
           DVIQG
Sbjct: 301 DVIQG 305


>pir||D71051 hypothetical protein PH1107 - Pyrococcus horikoshii
           >gi|3257523|dbj|BAA30206.1| (AP000005) 299aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 299
           
 Score =  437 bits (1113), Expect = e-122
 Identities = 197/295 (66%), Positives = 242/295 (81%)

Query: 1   MLKKMPKPIIVPSENGFDSRCSYNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVS 60
           MLKK+PKPI+ PS+ GFDS+  YNP+VI     ++MLYR E ED +TGRIGLALS DG++
Sbjct: 1   MLKKLPKPILEPSKEGFDSKNVYNPSVIYVREKFIMLYRAEGEDNVTGRIGLALSEDGIN 60

Query: 61  FVKHPLPVLEPELGCEIMGVEDPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKV 120
           FVKHP PV+EPE   E  G+EDPR+VK+GK Y+MTYTGYDG+IARLC+A+S+NLLSW K 
Sbjct: 61  FVKHPEPVMEPEYQWEKKGIEDPRVVKLGKRYVMTYTGYDGRIARLCIAVSKNLLSWEKG 120

Query: 121 GAIFDEFPGNYLRPKNWTKSGAILPEKVSGEYVMYFGDSNVWIAYSDDGLNWEYEREPVM 180
             +F  FPGN LRP+ WTKSGAILP+K++GEY+MYFGDSN+WIAYS DG++WEY   PVM
Sbjct: 121 EPLFPNFPGNRLRPRGWTKSGAILPQKINGEYIMYFGDSNIWIAYSSDGIHWEYYNSPVM 180

Query: 181 KPRKGKFDSLLVEPGSPPVKVGDSIVLIYNSADENLVYRPGIAVFDADDPSRLVWRSEKP 240
           KPRKGKFDSLLVEPG PP+   DSIVL YNSA+ENLVYR G+A+FD D+P ++  RS +P
Sbjct: 181 KPRKGKFDSLLVEPGPPPILTEDSIVLFYNSANENLVYRVGVALFDRDEPWKVKIRSRRP 240

Query: 241 IMEPEYEWEVKGKVDNVIFVEGLVDLGEKVLLYYGAADKYVGLAIWEGTLRELIE 295
           I+EPEY WE++G VDNV+F+EG VDLG ++L YYG ADKYVGLA WEG L  L++
Sbjct: 241 ILEPEYPWELEGHVDNVVFLEGFVDLGNRLLFYYGGADKYVGLATWEGDLTSLLK 295


>pir||E72203 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4982436|gb|AAD36914.1|AE001822_7 (AE001822)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 296
           
 Score =  203 bits (510), Expect = 3e-51
 Identities = 104/283 (36%), Positives = 168/283 (58%), Gaps = 17/283 (6%)

Query: 8   PIIVPSENG-FDSRCSYNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVSFVKHPL 66
           PI+ PS    ++SR  +NPAV+ +G  + +LYR + ED +  RIG A+S+DG+ F K   
Sbjct: 12  PILEPSPYFLWESRFVFNPAVVYDGELFHLLYRAQGED-MVSRIGYAVSTDGIHFNKFEK 70

Query: 67  PVLEPELGCEIMGVEDPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKVGAIFDE 126
           PV  P+   E+ GVEDPRI KIG +Y M YT Y  +  R+ +A ++N ++W + G +  E
Sbjct: 71  PVFAPKSDDELYGVEDPRITKIGDEYYMVYTAYSPRGVRIAMASTKNFITWKRYGVVIPE 130

Query: 127 FPGNYLRPKNWTKSGAILPEKVSGEYVMYFG-DSNVWIAYSDDGLNWEYEREPVMKPRKG 185
                       K  A+ PEK++G+YVM+     ++W+A+SDD ++W+     +  PR G
Sbjct: 131 VD---------NKDAALFPEKINGKYVMFHRIPPDMWLAFSDDLVHWD-NFVKIASPRPG 180

Query: 186 KFDSLLVEPGSPPVKVGDSIVLIY----NSADENLVYRPGIAVFDADDPSRLVWRSEKPI 241
            +D L +  G+PP+K     +++Y    N+     +YR G  + D +DP++++ RS++PI
Sbjct: 181 MWDDLKIGVGAPPIKTEYGWLVLYHGVQNTGTSRPIYRLGFMLLDLEDPTKVIKRSKEPI 240

Query: 242 MEPEYEWEVKGKVDNVIFVEGLVDLGEKVLLYYGAADKYVGLA 284
           +EPE +WE  G V NV+F + +++      +YYGAAD  + LA
Sbjct: 241 LEPEEDWEKFGGVPNVVFSDAMIEYNGYYYVYYGAADNCIALA 283


>pir||B72278 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981779|gb|AAD36300.1|AE001779_2 (AE001779)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 326
           
 Score = 91.7 bits (224), Expect = 1e-17
 Identities = 76/291 (26%), Positives = 142/291 (48%), Gaps = 34/291 (11%)

Query: 23  YNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVSFVKHPLPVLEPELGCEIMGVE- 81
           +N AV+     +V ++R + ++     +    S DG+++   P  +   ++  E      
Sbjct: 45  FNSAVVPYNGEFVGVFRIDHKN-TRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSY 103

Query: 82  --DPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKVGAIFDEFPGNYLRPKNWTK 139
             DPR+VKI   Y +T+   D     + + ++++  +       F   P  Y+    + +
Sbjct: 104 AYDPRVVKIEDTYYITFCT-DDHGPTIGVGMTKDFKT-------FVRLPNAYVP---FNR 152

Query: 140 SGAILPEKVSGEYVMY----------FGDSNVWIAYSDDGLNWEYEREPVMKPRKGKFDS 189
           +G + P K++G+YVM           FGD  ++++ S D ++W   R  + +     +++
Sbjct: 153 NGVLFPRKINGKYVMLNRPSDNGHTPFGD--IFLSESPDMIHWGNHRFVLGRSSYNWWEN 210

Query: 190 LLVEPGSPPVKVGDSIVLIYNSAD---ENLVYRPGIAVFDADDPSRLVWRSEKPIMEPEY 246
           L +  G  P++  +  +LIY+         VY  G A+ D DDPS++++RS   ++ PE 
Sbjct: 211 LKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEE 270

Query: 247 EWEVKGKVDNVIF-VEGLVDLGE-KVLLYYGAADKYVGLAIWEGTLRELIE 295
           E+E  G V NV+F    L D    +V +YYGAAD +V LA   G + E+++
Sbjct: 271 EYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAF--GYIDEIVD 319


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.141    0.432 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134513997
Number of Sequences: 2977
Number of extensions: 6268977
Number of successful extensions: 15969
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15947
Number of HSP's gapped (non-prelim): 4
length of query: 305
length of database: 189,106,746
effective HSP length: 52
effective length of query: 253
effective length of database: 157,985,422
effective search space: 39970311766
effective search space used: 39970311766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)