BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1622 (PAB1622) DE:Hypothetical protein
(305 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75091 hypothetical protein PAB1622 - Pyrococcus abyssi (st... 634 0.0
pir||D71051 hypothetical protein PH1107 - Pyrococcus horikoshii ... 437 e-122
pir||E72203 conserved hypothetical protein - Thermotoga maritima... 203 3e-51
pir||B72278 conserved hypothetical protein - Thermotoga maritima... 92 1e-17
>pir||H75091 hypothetical protein PAB1622 - Pyrococcus abyssi (strain Orsay)
>gi|5458549|emb|CAB50037.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 305
Score = 634 bits (1617), Expect = 0.0
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MLKKMPKPIIVPSENGFDSRCSYNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVS 60
MLKKMPKPIIVPSENGFDSRCSYNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVS
Sbjct: 1 MLKKMPKPIIVPSENGFDSRCSYNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVS 60
Query: 61 FVKHPLPVLEPELGCEIMGVEDPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKV 120
FVKHPLPVLEPELGCEIMGVEDPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKV
Sbjct: 61 FVKHPLPVLEPELGCEIMGVEDPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKV 120
Query: 121 GAIFDEFPGNYLRPKNWTKSGAILPEKVSGEYVMYFGDSNVWIAYSDDGLNWEYEREPVM 180
GAIFDEFPGNYLRPKNWTKSGAILPEKVSGEYVMYFGDSNVWIAYSDDGLNWEYEREPVM
Sbjct: 121 GAIFDEFPGNYLRPKNWTKSGAILPEKVSGEYVMYFGDSNVWIAYSDDGLNWEYEREPVM 180
Query: 181 KPRKGKFDSLLVEPGSPPVKVGDSIVLIYNSADENLVYRPGIAVFDADDPSRLVWRSEKP 240
KPRKGKFDSLLVEPGSPPVKVGDSIVLIYNSADENLVYRPGIAVFDADDPSRLVWRSEKP
Sbjct: 181 KPRKGKFDSLLVEPGSPPVKVGDSIVLIYNSADENLVYRPGIAVFDADDPSRLVWRSEKP 240
Query: 241 IMEPEYEWEVKGKVDNVIFVEGLVDLGEKVLLYYGAADKYVGLAIWEGTLRELIEKAGGG 300
IMEPEYEWEVKGKVDNVIFVEGLVDLGEKVLLYYGAADKYVGLAIWEGTLRELIEKAGGG
Sbjct: 241 IMEPEYEWEVKGKVDNVIFVEGLVDLGEKVLLYYGAADKYVGLAIWEGTLRELIEKAGGG 300
Query: 301 DVIQG 305
DVIQG
Sbjct: 301 DVIQG 305
>pir||D71051 hypothetical protein PH1107 - Pyrococcus horikoshii
>gi|3257523|dbj|BAA30206.1| (AP000005) 299aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 299
Score = 437 bits (1113), Expect = e-122
Identities = 197/295 (66%), Positives = 242/295 (81%)
Query: 1 MLKKMPKPIIVPSENGFDSRCSYNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVS 60
MLKK+PKPI+ PS+ GFDS+ YNP+VI ++MLYR E ED +TGRIGLALS DG++
Sbjct: 1 MLKKLPKPILEPSKEGFDSKNVYNPSVIYVREKFIMLYRAEGEDNVTGRIGLALSEDGIN 60
Query: 61 FVKHPLPVLEPELGCEIMGVEDPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKV 120
FVKHP PV+EPE E G+EDPR+VK+GK Y+MTYTGYDG+IARLC+A+S+NLLSW K
Sbjct: 61 FVKHPEPVMEPEYQWEKKGIEDPRVVKLGKRYVMTYTGYDGRIARLCIAVSKNLLSWEKG 120
Query: 121 GAIFDEFPGNYLRPKNWTKSGAILPEKVSGEYVMYFGDSNVWIAYSDDGLNWEYEREPVM 180
+F FPGN LRP+ WTKSGAILP+K++GEY+MYFGDSN+WIAYS DG++WEY PVM
Sbjct: 121 EPLFPNFPGNRLRPRGWTKSGAILPQKINGEYIMYFGDSNIWIAYSSDGIHWEYYNSPVM 180
Query: 181 KPRKGKFDSLLVEPGSPPVKVGDSIVLIYNSADENLVYRPGIAVFDADDPSRLVWRSEKP 240
KPRKGKFDSLLVEPG PP+ DSIVL YNSA+ENLVYR G+A+FD D+P ++ RS +P
Sbjct: 181 KPRKGKFDSLLVEPGPPPILTEDSIVLFYNSANENLVYRVGVALFDRDEPWKVKIRSRRP 240
Query: 241 IMEPEYEWEVKGKVDNVIFVEGLVDLGEKVLLYYGAADKYVGLAIWEGTLRELIE 295
I+EPEY WE++G VDNV+F+EG VDLG ++L YYG ADKYVGLA WEG L L++
Sbjct: 241 ILEPEYPWELEGHVDNVVFLEGFVDLGNRLLFYYGGADKYVGLATWEGDLTSLLK 295
>pir||E72203 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982436|gb|AAD36914.1|AE001822_7 (AE001822)
conserved hypothetical protein [Thermotoga maritima]
Length = 296
Score = 203 bits (510), Expect = 3e-51
Identities = 104/283 (36%), Positives = 168/283 (58%), Gaps = 17/283 (6%)
Query: 8 PIIVPSENG-FDSRCSYNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVSFVKHPL 66
PI+ PS ++SR +NPAV+ +G + +LYR + ED + RIG A+S+DG+ F K
Sbjct: 12 PILEPSPYFLWESRFVFNPAVVYDGELFHLLYRAQGED-MVSRIGYAVSTDGIHFNKFEK 70
Query: 67 PVLEPELGCEIMGVEDPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKVGAIFDE 126
PV P+ E+ GVEDPRI KIG +Y M YT Y + R+ +A ++N ++W + G + E
Sbjct: 71 PVFAPKSDDELYGVEDPRITKIGDEYYMVYTAYSPRGVRIAMASTKNFITWKRYGVVIPE 130
Query: 127 FPGNYLRPKNWTKSGAILPEKVSGEYVMYFG-DSNVWIAYSDDGLNWEYEREPVMKPRKG 185
K A+ PEK++G+YVM+ ++W+A+SDD ++W+ + PR G
Sbjct: 131 VD---------NKDAALFPEKINGKYVMFHRIPPDMWLAFSDDLVHWD-NFVKIASPRPG 180
Query: 186 KFDSLLVEPGSPPVKVGDSIVLIY----NSADENLVYRPGIAVFDADDPSRLVWRSEKPI 241
+D L + G+PP+K +++Y N+ +YR G + D +DP++++ RS++PI
Sbjct: 181 MWDDLKIGVGAPPIKTEYGWLVLYHGVQNTGTSRPIYRLGFMLLDLEDPTKVIKRSKEPI 240
Query: 242 MEPEYEWEVKGKVDNVIFVEGLVDLGEKVLLYYGAADKYVGLA 284
+EPE +WE G V NV+F + +++ +YYGAAD + LA
Sbjct: 241 LEPEEDWEKFGGVPNVVFSDAMIEYNGYYYVYYGAADNCIALA 283
>pir||B72278 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981779|gb|AAD36300.1|AE001779_2 (AE001779)
conserved hypothetical protein [Thermotoga maritima]
Length = 326
Score = 91.7 bits (224), Expect = 1e-17
Identities = 76/291 (26%), Positives = 142/291 (48%), Gaps = 34/291 (11%)
Query: 23 YNPAVIREGSTYVMLYRGESEDGLTGRIGLALSSDGVSFVKHPLPVLEPELGCEIMGVE- 81
+N AV+ +V ++R + ++ + S DG+++ P + ++ E
Sbjct: 45 FNSAVVPYNGEFVGVFRIDHKN-TRPFLHFGRSKDGINWEIEPEEIQWVDVNGEPFQPSY 103
Query: 82 --DPRIVKIGKDYLMTYTGYDGKIARLCLAISRNLLSWGKVGAIFDEFPGNYLRPKNWTK 139
DPR+VKI Y +T+ D + + ++++ + F P Y+ + +
Sbjct: 104 AYDPRVVKIEDTYYITFCT-DDHGPTIGVGMTKDFKT-------FVRLPNAYVP---FNR 152
Query: 140 SGAILPEKVSGEYVMY----------FGDSNVWIAYSDDGLNWEYEREPVMKPRKGKFDS 189
+G + P K++G+YVM FGD ++++ S D ++W R + + +++
Sbjct: 153 NGVLFPRKINGKYVMLNRPSDNGHTPFGD--IFLSESPDMIHWGNHRFVLGRSSYNWWEN 210
Query: 190 LLVEPGSPPVKVGDSIVLIYNSAD---ENLVYRPGIAVFDADDPSRLVWRSEKPIMEPEY 246
L + G P++ + +LIY+ VY G A+ D DDPS++++RS ++ PE
Sbjct: 211 LKIGAGPYPIETSEGWLLIYHGVTLTCNGYVYSFGAALLDLDDPSKVLYRSRYYLLTPEE 270
Query: 247 EWEVKGKVDNVIF-VEGLVDLGE-KVLLYYGAADKYVGLAIWEGTLRELIE 295
E+E G V NV+F L D +V +YYGAAD +V LA G + E+++
Sbjct: 271 EYETVGFVPNVVFPCAALCDADTGRVAIYYGAADTHVALAF--GYIDEIVD 319
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.141 0.432
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 134513997
Number of Sequences: 2977
Number of extensions: 6268977
Number of successful extensions: 15969
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15947
Number of HSP's gapped (non-prelim): 4
length of query: 305
length of database: 189,106,746
effective HSP length: 52
effective length of query: 253
effective length of database: 157,985,422
effective search space: 39970311766
effective search space used: 39970311766
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 165 (68.7 bits)