BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1623 (PAB1623) DE:Hypothetical protein
         (149 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75091 hypothetical protein PAB1623 - Pyrococcus abyssi (st...   305  2e-82
pir||E71051 hypothetical protein PH1108 - Pyrococcus horikoshii ...   251  3e-66

>pir||G75091 hypothetical protein PAB1623 - Pyrococcus abyssi (strain Orsay)
           >gi|5458548|emb|CAB50036.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 149
           
 Score =  305 bits (772), Expect = 2e-82
 Identities = 149/149 (100%), Positives = 149/149 (100%)

Query: 1   MLFRGKYLVKVLEINEPCKELVRGSYVVLGEDEYEIYLKIEPFMEFRREFCLVKCEGKIL 60
           MLFRGKYLVKVLEINEPCKELVRGSYVVLGEDEYEIYLKIEPFMEFRREFCLVKCEGKIL
Sbjct: 1   MLFRGKYLVKVLEINEPCKELVRGSYVVLGEDEYEIYLKIEPFMEFRREFCLVKCEGKIL 60

Query: 61  LSEDCKYVGEVYWVRDAIGLWRLIHGKYSESGIHLILAFVVLGILYSLLGFVKRESFWTV 120
           LSEDCKYVGEVYWVRDAIGLWRLIHGKYSESGIHLILAFVVLGILYSLLGFVKRESFWTV
Sbjct: 61  LSEDCKYVGEVYWVRDAIGLWRLIHGKYSESGIHLILAFVVLGILYSLLGFVKRESFWTV 120

Query: 121 TGVLLVIFLVMMDLAKAIQYFLIGYVRAS 149
           TGVLLVIFLVMMDLAKAIQYFLIGYVRAS
Sbjct: 121 TGVLLVIFLVMMDLAKAIQYFLIGYVRAS 149


>pir||E71051 hypothetical protein PH1108 - Pyrococcus horikoshii
           >gi|3257524|dbj|BAA30207.1| (AP000005) 151aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 151
           
 Score =  251 bits (635), Expect = 3e-66
 Identities = 115/149 (77%), Positives = 136/149 (91%)

Query: 1   MLFRGKYLVKVLEINEPCKELVRGSYVVLGEDEYEIYLKIEPFMEFRREFCLVKCEGKIL 60
           MLFRG+YLVK+LEI EPC ELV+GSYVV+G+ EYE+ LKIEPF+EFRRE CLVKCEGK++
Sbjct: 3   MLFRGRYLVKLLEIEEPCSELVKGSYVVIGDSEYEVDLKIEPFLEFRREACLVKCEGKVI 62

Query: 61  LSEDCKYVGEVYWVRDAIGLWRLIHGKYSESGIHLILAFVVLGILYSLLGFVKRESFWTV 120
           LSEDCKY+GEVYWVR+A GLWRLI GK SE G HLILAF+V+ ILYSLLGFV+ +SFWTV
Sbjct: 63  LSEDCKYIGEVYWVRNAKGLWRLIQGKRSEEGFHLILAFIVMIILYSLLGFVRAKSFWTV 122

Query: 121 TGVLLVIFLVMMDLAKAIQYFLIGYVRAS 149
           TGVLLVIF+++MD+ KA+QYFLIGYV+AS
Sbjct: 123 TGVLLVIFIILMDIGKALQYFLIGYVKAS 151


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.149    0.458 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53598249
Number of Sequences: 2977
Number of extensions: 2142742
Number of successful extensions: 6545
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6542
Number of HSP's gapped (non-prelim): 2
length of query: 149
length of database: 189,106,746
effective HSP length: 47
effective length of query: 102
effective length of database: 160,977,857
effective search space: 16419741414
effective search space used: 16419741414
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 162 (67.5 bits)