BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1624 (PAB1624) DE:Hypothetical protein
(148 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75091 hypothetical protein PAB1624 - Pyrococcus abyssi (st... 305 2e-82
pir||F71051 hypothetical protein PH1109 - Pyrococcus horikoshii ... 251 3e-66
emb|CAC12134.1| (AL445066) conserved hypothetical protein [Therm... 127 6e-29
gb|AAK41368.1| Conserved hypothetical protein [Sulfolobus solfat... 124 4e-28
pir||H72546 hypothetical protein APE1660 - Aeropyrum pernix (str... 116 2e-25
dbj|BAA35730.1| (D90734) ORF_ID:o223#10 [Escherichia coli] 104 7e-22
dbj|BAB05860.1| (AP001514) unknown conserved protein [Bacillus h... 104 7e-22
pir||D64837 hypothetical protein b0965 - Escherichia coli >gi|17... 104 7e-22
pir||B69892 conserved hypothetical protein yneT - Bacillus subti... 90 9e-18
pir||H72254 conserved hypothetical protein - Thermotoga maritima... 85 5e-16
gb|AAG19116.1| (AE005009) Vng0608c [Halobacterium sp. NRC-1] 82 4e-15
pir||C70461 hypothetical protein aq_1869 - Aquifex aeolicus >gi|... 79 2e-14
sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir... 71 8e-12
pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (st... 70 1e-11
gi|11498810 conserved hypothetical protein [Archaeoglobus fulgid... 70 1e-11
pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alph... 69 2e-11
pir||F75505 conserved hypothetical protein - Deinococcus radiodu... 69 3e-11
gi|11498792 conserved hypothetical protein [Archaeoglobus fulgid... 68 5e-11
pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii ... 68 5e-11
pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomy... 67 9e-11
pir||E81355 hypothetical protein Cj0829c [imported] - Campylobac... 67 9e-11
>pir||F75091 hypothetical protein PAB1624 - Pyrococcus abyssi (strain Orsay)
>gi|5458547|emb|CAB50035.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 148
Score = 305 bits (772), Expect = 2e-82
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MVRIMPIDRLTDEDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYD 60
MVRIMPIDRLTDEDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYD
Sbjct: 1 MVRIMPIDRLTDEDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYD 60
Query: 61 EVLGRKCYPSVLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRA 120
EVLGRKCYPSVLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRA
Sbjct: 61 EVLGRKCYPSVLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRA 120
Query: 121 KEAGLIAVANRCMMREHERLIGSKGKEV 148
KEAGLIAVANRCMMREHERLIGSKGKEV
Sbjct: 121 KEAGLIAVANRCMMREHERLIGSKGKEV 148
>pir||F71051 hypothetical protein PH1109 - Pyrococcus horikoshii
>gi|3257525|dbj|BAA30208.1| (AP000005) 144aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 144
Score = 251 bits (634), Expect = 3e-66
Identities = 119/144 (82%), Positives = 130/144 (89%)
Query: 1 MVRIMPIDRLTDEDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYD 60
M PID LTDED++EIL +YKKIALVGASPKPERDAN VMKYLLEHGY+VYPVNPKY+
Sbjct: 1 MEETRPIDGLTDEDIREILTRYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE 60
Query: 61 EVLGRKCYPSVLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRA 120
EVLGRKCYPSVLDIPD +EVVDLFV+P+ TM+YVEQAIKKGAKVVWFQY TYNREA K+A
Sbjct: 61 EVLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQYNTYNREASKKA 120
Query: 121 KEAGLIAVANRCMMREHERLIGSK 144
EAGLI VANRCMMREHERL+G K
Sbjct: 121 DEAGLIIVANRCMMREHERLLGEK 144
>emb|CAC12134.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 133
Score = 127 bits (316), Expect = 6e-29
Identities = 60/128 (46%), Positives = 86/128 (66%)
Query: 13 EDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDEVLGRKCYPSVL 72
+D++ IL +KIA+VG S KP+RD+ RV KYL ++GYE+ PVNP E G+K YP +L
Sbjct: 3 DDIEWILNNSRKIAVVGISDKPDRDSYRVAKYLSDNGYEIIPVNPMIQEWNGKKAYPDIL 62
Query: 73 DIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRAKEAGLIAVANRC 132
IP+ ++VVD+F +P+ + V QAI K K +W Q + ++ KRA GL V+NRC
Sbjct: 63 SIPESIDVVDVFRKPDAVPEIVNQAISKRVKAIWLQEGIEHPDSEKRAMANGLRVVSNRC 122
Query: 133 MMREHERL 140
MM+EH +L
Sbjct: 123 MMKEHRKL 130
>gb|AAK41368.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 154
Score = 124 bits (309), Expect = 4e-28
Identities = 63/136 (46%), Positives = 92/136 (67%), Gaps = 7/136 (5%)
Query: 12 DEDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDEVLGRKCYPSV 71
+E +KE+LLKYK IA VG S P + A +V K+L++HGY V PVNP E+LG+K YPS+
Sbjct: 5 EEVIKEVLLKYKNIATVGFSKDPSKAAFQVPKFLMDHGYNVIPVNPSASEILGKKSYPSI 64
Query: 72 LDIPDDVEVVDLFVRPE----FTMDYVEQAIKK--GAKVVWFQYYTYNREAFKRAKEAGL 125
LD+PD VE+V++F RP +D V + +KK KV+W Q N EA ++A++AGL
Sbjct: 65 LDVPDKVEIVEIF-RPSNEVPKIVDQVLERVKKVGDVKVIWMQEGIRNDEAAEKARKAGL 123
Query: 126 IAVANRCMMREHERLI 141
+ + +RCM +E+ + I
Sbjct: 124 VVIQDRCMYKEYMKKI 139
>pir||H72546 hypothetical protein APE1660 - Aeropyrum pernix (strain K1)
>gi|5105348|dbj|BAA80661.1| (AP000062) 168aa long
hypothetical protein [Aeropyrum pernix]
Length = 168
Score = 116 bits (287), Expect = 2e-25
Identities = 64/139 (46%), Positives = 85/139 (61%), Gaps = 9/139 (6%)
Query: 14 DVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDEVLGRKCYPSVLD 73
D E+L + +A+VGAS PE+DA RV +YL + GY + PVNP DE+LG K YPS+ +
Sbjct: 27 DPFEVLRTARVVAVVGASRNPEKDAYRVPEYLKKAGYRIIPVNPSADEILGEKAYPSLDE 86
Query: 74 IPD----DVEVVDLFVRPEFTMDYVEQAIKKGAK-----VVWFQYYTYNREAFKRAKEAG 124
IPD +V+VVD+F P EQAI+ + VVWFQ T + EA K+ +AG
Sbjct: 87 IPDEIAREVDVVDVFRPPREAEAVAEQAIRLARRAGRRIVVWFQKGTASEEAVKKLLDAG 146
Query: 125 LIAVANRCMMREHERLIGS 143
L V +RCMM EH R+ S
Sbjct: 147 LDVVVDRCMMEEHRRMTAS 165
>dbj|BAA35730.1| (D90734) ORF_ID:o223#10 [Escherichia coli]
Length = 155
Score = 104 bits (256), Expect = 7e-22
Identities = 57/133 (42%), Positives = 80/133 (59%), Gaps = 2/133 (1%)
Query: 10 LTDEDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKY--DEVLGRKC 67
+ + D+ IL IALVGAS KP+R + RVMKYLL+ GY V PV+PK +LG+K
Sbjct: 19 MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQKG 78
Query: 68 YPSVLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRAKEAGLIA 127
Y ++ D+P+ V++VD+F E ++AI GAK +W Q N +A A++AGL
Sbjct: 79 YGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQLGVINEQAAVLARDAGLNV 138
Query: 128 VANRCMMREHERL 140
V +RC E RL
Sbjct: 139 VMDRCPAIEIPRL 151
>dbj|BAB05860.1| (AP001514) unknown conserved protein [Bacillus halodurans]
Length = 137
Score = 104 bits (256), Expect = 7e-22
Identities = 51/129 (39%), Positives = 78/129 (59%)
Query: 11 TDEDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDEVLGRKCYPS 70
+DE +K+IL + K+IA+VG S P+R + V + GYE+ PVNP DEVLG K PS
Sbjct: 6 SDEKIKQILQEAKRIAVVGLSGNPDRTSYMVSAAMQHAGYEIIPVNPTVDEVLGEKAVPS 65
Query: 71 VLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRAKEAGLIAVAN 130
+ DI V++V++F R E D + ++ GA V W Q N+EA+ ++ G+ ++ N
Sbjct: 66 LQDIEGAVDIVNVFRRSEHLPDVARETVEIGAPVFWAQLGLENKEAYDYLQQHGVTSIMN 125
Query: 131 RCMMREHER 139
RC+ EH +
Sbjct: 126 RCIKVEHAK 134
>pir||D64837 hypothetical protein b0965 - Escherichia coli
>gi|1787199|gb|AAC74051.1| (AE000198) orf, hypothetical
protein [Escherichia coli K12]
Length = 164
Score = 104 bits (256), Expect = 7e-22
Identities = 57/133 (42%), Positives = 80/133 (59%), Gaps = 2/133 (1%)
Query: 10 LTDEDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKY--DEVLGRKC 67
+ + D+ IL IALVGAS KP+R + RVMKYLL+ GY V PV+PK +LG+K
Sbjct: 28 MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQKG 87
Query: 68 YPSVLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRAKEAGLIA 127
Y ++ D+P+ V++VD+F E ++AI GAK +W Q N +A A++AGL
Sbjct: 88 YGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQLGVINEQAAVLARDAGLNV 147
Query: 128 VANRCMMREHERL 140
V +RC E RL
Sbjct: 148 VMDRCPAIEIPRL 160
>pir||B69892 conserved hypothetical protein yneT - Bacillus subtilis
>gi|1405460|emb|CAA97605.1| (Z73234) YneT [Bacillus
subtilis] >gi|2634191|emb|CAB13691.1| (Z99113) similar
to hypothetical proteins [Bacillus subtilis]
Length = 135
Score = 90.5 bits (221), Expect = 9e-18
Identities = 45/124 (36%), Positives = 72/124 (57%)
Query: 14 DVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDEVLGRKCYPSVLD 73
++KEIL + K+IA+VG S +P+R ++ V K + + GYE+ PVNP DE LG K S+ +
Sbjct: 8 EIKEILQRSKRIAVVGLSDRPDRTSHMVSKAMQDAGYEIIPVNPTIDEALGVKAVSSLKE 67
Query: 74 IPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRAKEAGLIAVANRCM 133
I +++V++F R E E+ ++ A V W Q N EA++ KE G + + C+
Sbjct: 68 IDGPIDIVNVFRRSEQLPGVAEEFLETDAPVFWAQQGLVNEEAYQMLKEKGRTVIMDLCI 127
Query: 134 MREH 137
H
Sbjct: 128 KVAH 131
>pir||H72254 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4982000|gb|AAD36505.1|AE001795_8 (AE001795)
conserved hypothetical protein [Thermotoga maritima]
Length = 131
Score = 84.7 bits (206), Expect = 5e-16
Identities = 38/95 (40%), Positives = 62/95 (65%)
Query: 21 KYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDEVLGRKCYPSVLDIPDDVEV 80
K+KKIALVGA+ P + N ++K L+ G+EV PVNPKYDE+ G + Y SV ++P++++V
Sbjct: 5 KFKKIALVGATVNPRKYGNVILKDLVSKGFEVLPVNPKYDEIEGFRVYKSVEELPENIDV 64
Query: 81 VDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNRE 115
+ V PE ++ ++A G + W+Q ++ E
Sbjct: 65 IVFVVPPEVALEETKKAYDAGFRRFWYQPGAFSEE 99
>gb|AAG19116.1| (AE005009) Vng0608c [Halobacterium sp. NRC-1]
Length = 137
Score = 81.5 bits (198), Expect = 4e-15
Identities = 50/132 (37%), Positives = 72/132 (53%), Gaps = 2/132 (1%)
Query: 11 TDEDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDEVLGRKCYPS 70
TD + + +L + IA+VG S P + A+ V YL HGY V PVNP + VLG S
Sbjct: 5 TDSE-RRAVLDAETIAVVGCSATPGKPAHEVPAYLDAHGYTVVPVNPYAERVLGHAAADS 63
Query: 71 VLDIPDDVEVVDLFVRPEFTMDYVEQAI-KKGAKVVWFQYYTYNREAFKRAKEAGLIAVA 129
+ +I V+VVD+F E V+ AI + VW Q + +A +RA AGL V+
Sbjct: 64 LAEIDQRVDVVDVFRPREEVPGIVDAAIARDDVGAVWLQVGIQHADAEERAAAAGLRVVS 123
Query: 130 NRCMMREHERLI 141
N C+ +H+RL+
Sbjct: 124 NSCIKVDHQRLV 135
>pir||C70461 hypothetical protein aq_1869 - Aquifex aeolicus
>gi|2984146|gb|AAC07681.1| (AE000760) putative protein
[Aquifex aeolicus]
Length = 137
Score = 79.2 bits (192), Expect = 2e-14
Identities = 40/124 (32%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 13 EDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHG-YEVYPVNPKY--DEVLGRKCYP 69
++ E L K +A+VG SPKPER + + +++ G +++Y VNP+Y E+ G K P
Sbjct: 8 DEAFETLKNAKVVAVVGISPKPERPSYYTTEKVVKKGKHKIYLVNPRYAGQEIFGIKVLP 67
Query: 70 SVLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRAKEAGLIAVA 129
S+ D+P+ +++V+++ P + +++A++ GAK VWFQ N E ++ K+ + +
Sbjct: 68 SLKDVPEPIDIVNVYRNPAHAEEVIKEALEVGAKAVWFQPGAENLEVIEKYKDK-IKIIY 126
Query: 130 NRCM 133
N C+
Sbjct: 127 NACI 130
>sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir||F64373 hypothetical
protein homolog MJ0590 - Methanococcus jannaschii
>gi|1591298|gb|AAB98580.1| (U67507) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 704
Score = 70.6 bits (170), Expect = 8e-12
Identities = 35/88 (39%), Positives = 52/88 (58%), Gaps = 4/88 (4%)
Query: 20 LKY----KKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDEVLGRKCYPSVLDIP 75
LKY K +A++GAS + +MK L + ++YP+NPKYDE+ G KCY SVLD+
Sbjct: 8 LKYISYPKSVAIIGASKTEGKVGYAIMKNLKDFNGKIYPINPKYDEIFGIKCYKSVLDVE 67
Query: 76 DDVEVVDLFVRPEFTMDYVEQAIKKGAK 103
DD+++ + V +E+ KKG K
Sbjct: 68 DDIDLAVIVVPNIVVPKVLEECGKKGVK 95
>pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (strain Orsay)
>gi|5458076|emb|CAB49565.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 460
Score = 70.2 bits (169), Expect = 1e-11
Identities = 41/95 (43%), Positives = 59/95 (61%), Gaps = 6/95 (6%)
Query: 17 EILLKYKKIALVGASPKPERDANRVMKYLLEHGYE--VYPVNPKYD--EVLGR--KCYPS 70
E L K IA++GAS KP + +MK L+E+GYE +YPVN K E+ GR K Y S
Sbjct: 4 EALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYKS 63
Query: 71 VLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVV 105
+L++PD+V++ + V +F VE+ +KG KVV
Sbjct: 64 ILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVV 98
>gi|11498810 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448044|pir||B69401 conserved hypothetical protein
AF1211 - Archaeoglobus fulgidus
>gi|2649370|gb|AAB90033.1| (AE001020) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 685
Score = 69.9 bits (168), Expect = 1e-11
Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 5/118 (4%)
Query: 17 EILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDEVLGRKCYPSVLDIPD 76
E L K +A++GASP+ + N +MK L VY VNPKY E+LG CYPSVL IP+
Sbjct: 2 ERLFYPKVVAVIGASPQEGKVGNTIMKNLRNFSGTVYAVNPKYREILGFPCYPSVLKIPE 61
Query: 77 DVEVVDLFVRPEFTMDYVEQAIKK---GAKVVWFQYYTYNREAFKRAKEAGLIAVANR 131
+V++ + V + VE+ +K GA V+ + E K +E L+ VA R
Sbjct: 62 NVDLAIIVVPAKLVPKAVEECGRKDVEGAVVISAGFKEAGIEGAKLERE--LVEVAER 117
>pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alpha chain
[validated] - Pyrococcus furiosus
>gi|5419966|emb|CAB46516.1| (AJ240061) acetyl-CoA
synthetase [Pyrococcus furiosus]
Length = 462
Score = 69.1 bits (166), Expect = 2e-11
Identities = 41/95 (43%), Positives = 59/95 (61%), Gaps = 6/95 (6%)
Query: 17 EILLKYKKIALVGASPKPERDANRVMKYLLEHGYE--VYPVNPKYD--EVLGR--KCYPS 70
E L K +A++GAS KP + +MK L+E+GYE +YPVN K E+ GR K Y S
Sbjct: 4 EALFNPKSVAVIGASAKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEIEINGRKFKVYKS 63
Query: 71 VLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVV 105
VL+IPD+V++ + V +F +E+ +KG KVV
Sbjct: 64 VLEIPDEVDMAVIVVPAKFVPQVLEECGQKGVKVV 98
>pir||F75505 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458247|gb|AAF10133.1|AE001913_7 (AE001913)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 142
Score = 68.7 bits (165), Expect = 3e-11
Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 6/134 (4%)
Query: 14 DVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDE----VLGRKCYP 69
++ + L + K +A+VG P + A+ V +YL GY V PVNP E G+K
Sbjct: 9 EIAQALSQSKVVAVVGFHHDPMKPAHYVPEYLSRQGYTVIPVNPSLAERGQSFFGQKAVS 68
Query: 70 SVLDIPDDVEVVDLFVRPEFTMDYVEQ--AIKKGAKVVWFQYYTYNREAFKRAKEAGLIA 127
S+ +I V++V++F R + +++ ++ ++VW Q N + EAG+
Sbjct: 69 SLAEIATPVDIVEVFRRSDKVPEHLPDILSMSPAPRLVWMQQGIRNEAVARTLHEAGIDV 128
Query: 128 VANRCMMREHERLI 141
V +RCM+ +H L+
Sbjct: 129 VQDRCMLTDHRGLL 142
>gi|11498792 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483097|pir||G69398 conserved hypothetical protein
AF1192 - Archaeoglobus fulgidus
>gi|2649402|gb|AAB90053.1| (AE001022) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 664
Score = 67.9 bits (163), Expect = 5e-11
Identities = 43/133 (32%), Positives = 68/133 (50%), Gaps = 13/133 (9%)
Query: 13 EDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGY--EVYPVNPKYDEVLGRKCYPS 70
ED+ K K +A++GAS + RV+ L G+ +VYPVNP E+LG KCYPS
Sbjct: 216 EDIS-FFFKAKSVAVIGASRNLLKPGGRVLSNLKHLGFRGKVYPVNPNAGEILGYKCYPS 274
Query: 71 VLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVV----------WFQYYTYNREAFKRA 120
V IPD V++ + V + ++ V++ +KG K + W Q R+ + A
Sbjct: 275 VRAIPDKVDLAVIAVPSKNAIEVVKECAEKGVKGIIVLSAGFAEGWEQGKELERQIVEIA 334
Query: 121 KEAGLIAVANRCM 133
+++G+ V M
Sbjct: 335 RKSGMRIVGPNTM 347
>pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii
>gi|3257942|dbj|BAA30625.1| (AP000006) 460aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 460
Score = 67.9 bits (163), Expect = 5e-11
Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 6/94 (6%)
Query: 17 EILLKYKKIALVGASPKPERDANRVMKYLLEHGYE--VYPVNPKYD--EVLGR--KCYPS 70
E L K IA++GAS KP + +MK L+E+GYE +YPVN K E+ GR K Y S
Sbjct: 4 EALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYKS 63
Query: 71 VLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKV 104
+L++PD+V++ + V + + VE+ KKG KV
Sbjct: 64 ILEVPDEVDMAVIVVPAKSVPEVVEECGKKGVKV 97
>pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomyces coelicolor
>gi|3288603|emb|CAA19775.1| (AL031013) hypothetical
protein SC8A6.03c [Streptomyces coelicolor A3(2)]
Length = 714
Score = 67.1 bits (161), Expect = 9e-11
Identities = 32/84 (38%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 19 LLKYKKIALVGASPKPERDANRVMKYLLEHGY--EVYPVNPKYDEVLGRKCYPSVLDIPD 76
L++ +A++GAS +P + N VM+ L++ G+ E++PVNPK D++LGRK Y SV D+P
Sbjct: 258 LMQPASVAVIGASGEPGKIGNSVMRNLVDGGFAGEIHPVNPKADDILGRKAYKSVTDVPG 317
Query: 77 DVEVVDLFVRPEFTMDYVEQAIKK 100
+V+V + F +E+ +K
Sbjct: 318 EVDVAVFAIPARFVAAALEEVGRK 341
>pir||E81355 hypothetical protein Cj0829c [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6968275|emb|CAB73094.1|
(AL139076) hypothetical protein Cj0829c [Campylobacter
jejuni]
Length = 137
Score = 67.1 bits (161), Expect = 9e-11
Identities = 32/125 (25%), Positives = 65/125 (51%)
Query: 13 EDVKEILLKYKKIALVGASPKPERDANRVMKYLLEHGYEVYPVNPKYDEVLGRKCYPSVL 72
E + I+ K I + SP + + RV ++L Y+++P+ PK + +L K Y ++
Sbjct: 5 ETISYIINTSKNIVIFALSPDKTKASYRVAEFLQRKNYKIFPIYPKEEFILNEKVYRNLD 64
Query: 73 DIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVVWFQYYTYNREAFKRAKEAGLIAVANRC 132
I + ++ + LF + E ++ + + ++K K +W Q N A + K+ + + NRC
Sbjct: 65 QIEEKIDTLILFRKGEVALEILPKLVEKNIKNLWLQLDISNETAKEECKKLDINFIQNRC 124
Query: 133 MMREH 137
+M E+
Sbjct: 125 IMLEY 129
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.410
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55676654
Number of Sequences: 2977
Number of extensions: 2295352
Number of successful extensions: 5219
Number of sequences better than 1.0e-10: 21
Number of HSP's better than 0.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 5195
Number of HSP's gapped (non-prelim): 21
length of query: 148
length of database: 189,106,746
effective HSP length: 52
effective length of query: 96
effective length of database: 157,985,422
effective search space: 15166600512
effective search space used: 15166600512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)