BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1625 (PAB1625) DE:Hypothetical protein
         (209 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75091 hypothetical protein PAB1625 - Pyrococcus abyssi (st...   407  e-113
pir||A71049 hypothetical protein PH1681 - Pyrococcus horikoshii ...    87  1e-16
pir||F75166 hypothetical protein PAB0330 - Pyrococcus abyssi (st...    85  8e-16

>pir||E75091 hypothetical protein PAB1625 - Pyrococcus abyssi (strain Orsay)
           >gi|5458546|emb|CAB50034.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 209
           
 Score =  407 bits (1036), Expect = e-113
 Identities = 209/209 (100%), Positives = 209/209 (100%)

Query: 1   MMKMRKTLAVFLLLLGYFLAILTVYFLGYEFSIKPFALGIVGIIIALIIQFPLQLLVIFL 60
           MMKMRKTLAVFLLLLGYFLAILTVYFLGYEFSIKPFALGIVGIIIALIIQFPLQLLVIFL
Sbjct: 1   MMKMRKTLAVFLLLLGYFLAILTVYFLGYEFSIKPFALGIVGIIIALIIQFPLQLLVIFL 60

Query: 61  RDKLNLGTLLVSIGLGFSAGFSQELVKYLFLHGKEVSTGIMFGLGIGFFEVLYAIPVVFY 120
           RDKLNLGTLLVSIGLGFSAGFSQELVKYLFLHGKEVSTGIMFGLGIGFFEVLYAIPVVFY
Sbjct: 61  RDKLNLGTLLVSIGLGFSAGFSQELVKYLFLHGKEVSTGIMFGLGIGFFEVLYAIPVVFY 120

Query: 121 EEQLPEHMKKLVEKNSWLGAWERYFGTLFHIATSAILTYAGLGVLVLFMLLHGLVDSLAE 180
           EEQLPEHMKKLVEKNSWLGAWERYFGTLFHIATSAILTYAGLGVLVLFMLLHGLVDSLAE
Sbjct: 121 EEQLPEHMKKLVEKNSWLGAWERYFGTLFHIATSAILTYAGLGVLVLFMLLHGLVDSLAE 180

Query: 181 MHNLGESKKALFLGEVLLSILSVLLILSL 209
           MHNLGESKKALFLGEVLLSILSVLLILSL
Sbjct: 181 MHNLGESKKALFLGEVLLSILSVLLILSL 209


>pir||A71049 hypothetical protein PH1681 - Pyrococcus horikoshii
           >gi|3258110|dbj|BAA30793.1| (AP000006) 213aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 213
           
 Score = 87.4 bits (213), Expect = 1e-16
 Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 12/199 (6%)

Query: 13  LLLGYFLAILTVYFLGYE-FSIKPFALGIVGIIIALIIQFPLQLLVIFLRDKLNL-GTLL 70
           L+ G  LA L VYFL    F    F LG+    IA+ IQ  +Q   +      N+   LL
Sbjct: 7   LIFGGILAWLFVYFLRLRRFYAGEFLLGLFIFGIAITIQSIIQKASLVW---FNVHAKLL 63

Query: 71  VSIGLGFSAGFSQELVKYLFLHGKEVSTGIMFGLGIGFFEVLYAIPVVFYEEQLPEHMKK 130
           +S+ LGF AGF QE +KY+F+ G     G M GLG G  EV+    V          +  
Sbjct: 64  ISLWLGFLAGFIQEGIKYIFVKGMTPYKGAMVGLGFGIAEVILLAVVATLAGSSNVPLYL 123

Query: 131 LVEKNSWLGAWERYFGTLFHIATSAILTYAGLGVLVLFMLLHGLVDSLAEMHNLGE--SK 188
           LV       A ER+F  +FH+A++++L  + L + +    +HGLVD+LA    L    + 
Sbjct: 124 LV-----ASATERFFAVVFHVASTSLLASSNLRIFLGVFTVHGLVDTLASYSQLSRVLNT 178

Query: 189 KALFLGEVLLSILSVLLIL 207
             +FL E +  + ++ L+L
Sbjct: 179 PKVFLIEAVFGVFALFLLL 197


>pir||F75166 hypothetical protein PAB0330 - Pyrococcus abyssi (strain Orsay)
           >gi|5457923|emb|CAB49413.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 215
           
 Score = 84.7 bits (206), Expect = 8e-16
 Identities = 64/201 (31%), Positives = 103/201 (50%), Gaps = 9/201 (4%)

Query: 13  LLLGYFLAILTVYFLGYE-FSIKPFALGIVGIIIALIIQFPLQLLVIFLRDKLNLGTLLV 71
           ++LG  LA + +YFL  + F    F LGI   +IA+ IQ  +Q   +   +  +   L +
Sbjct: 7   IILGGALAWVFLYFLRLKKFYPGEFILGIFAFVIAMAIQNMIQRTPLLWFNLSSASKLAL 66

Query: 72  SIGLGFSAGFSQELVKYLFLHGKEVSTGIMFGLGIGFFEVLYAIPVVFYEEQLPEHMKKL 131
           ++  GFSAGF QE +KY+F+ G +   G + GLG G  EV+     V  E         L
Sbjct: 67  ALWFGFSAGFVQEGIKYVFVKGMKPYKGAIVGLGFGIAEVILLAVAVTIEGPSNVPWFLL 126

Query: 132 VEKNSWLGAWERYFGTLFHIATSAILTYAGLGVLVLFMLLHGLVDSLAE---MHNLGESK 188
           V         ER+   LFH+A++++L+ +   V +    +HG+VDS+A    + NL ES 
Sbjct: 127 V-----AALVERFSAVLFHVASTSLLSSSNSLVFLGVFAVHGVVDSIASYSLLINLVESP 181

Query: 189 KALFLGEVLLSILSVLLILSL 209
           K  ++  ++  I  V+L  +L
Sbjct: 182 KVFWVEAIVGGIALVMLKFAL 202


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.150    0.433 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69847141
Number of Sequences: 2977
Number of extensions: 2843080
Number of successful extensions: 10235
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10232
Number of HSP's gapped (non-prelim): 3
length of query: 209
length of database: 189,106,746
effective HSP length: 50
effective length of query: 159
effective length of database: 159,182,396
effective search space: 25310000964
effective search space used: 25310000964
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 163 (67.9 bits)