BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1631 (PAB1631) DE:Hypothetical protein
         (148 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75090 hypothetical protein PAB1631 - Pyrococcus abyssi (st...   286  8e-77
pir||G71052 hypothetical protein PH1118 - Pyrococcus horikoshii ...   247  4e-65
pir||B72573 hypothetical protein APE1866 - Aeropyrum pernix (str...    84  6e-16

>pir||D75090 hypothetical protein PAB1631 - Pyrococcus abyssi (strain Orsay)
           >gi|5458537|emb|CAB50025.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 148
           
 Score =  286 bits (724), Expect = 8e-77
 Identities = 148/148 (100%), Positives = 148/148 (100%)

Query: 1   MPKLMTGFVRASGYANKVRRVLFAVTRGKVEPEEVVRAAAEVNKAIFEKLQELGVKKEDV 60
           MPKLMTGFVRASGYANKVRRVLFAVTRGKVEPEEVVRAAAEVNKAIFEKLQELGVKKEDV
Sbjct: 1   MPKLMTGFVRASGYANKVRRVLFAVTRGKVEPEEVVRAAAEVNKAIFEKLQELGVKKEDV 60

Query: 61  VRISIEFDIVDGKISWEYDTLNIEVYRKEEEEKLALAMEEVEEMERTLEEVVMELENLAN 120
           VRISIEFDIVDGKISWEYDTLNIEVYRKEEEEKLALAMEEVEEMERTLEEVVMELENLAN
Sbjct: 61  VRISIEFDIVDGKISWEYDTLNIEVYRKEEEEKLALAMEEVEEMERTLEEVVMELENLAN 120

Query: 121 KLKEVTDSILSLVERIKQEHTGLKLKGE 148
           KLKEVTDSILSLVERIKQEHTGLKLKGE
Sbjct: 121 KLKEVTDSILSLVERIKQEHTGLKLKGE 148


>pir||G71052 hypothetical protein PH1118 - Pyrococcus horikoshii
           >gi|3257534|dbj|BAA30217.1| (AP000005) 247aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 247
           
 Score =  247 bits (624), Expect = 4e-65
 Identities = 124/148 (83%), Positives = 139/148 (93%)

Query: 1   MPKLMTGFVRASGYANKVRRVLFAVTRGKVEPEEVVRAAAEVNKAIFEKLQELGVKKEDV 60
           +PKLM+GFVRASGYANKVRRVLFAVTRGKV PEEVVRA+AE+NK IFEKLQE+GVKKEDV
Sbjct: 100 VPKLMSGFVRASGYANKVRRVLFAVTRGKVPPEEVVRASAEINKTIFEKLQEMGVKKEDV 159

Query: 61  VRISIEFDIVDGKISWEYDTLNIEVYRKEEEEKLALAMEEVEEMERTLEEVVMELENLAN 120
           VRI+ +FDI DGKI W+ +TL IEVY+KEEEEKLALAMEEVE+ME+TLEEV+ ELE LAN
Sbjct: 160 VRIAFDFDIEDGKILWKPETLKIEVYKKEEEEKLALAMEEVEQMEKTLEEVIGELEGLAN 219

Query: 121 KLKEVTDSILSLVERIKQEHTGLKLKGE 148
           KLKEVTD+I+SLVERIKQEHTGLKLKGE
Sbjct: 220 KLKEVTDAIVSLVERIKQEHTGLKLKGE 247


>pir||B72573 hypothetical protein APE1866 - Aeropyrum pernix (strain K1)
           >gi|5105558|dbj|BAA80871.1| (AP000062) 239aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 239
           
 Score = 84.3 bits (205), Expect = 6e-16
 Identities = 48/119 (40%), Positives = 76/119 (63%), Gaps = 7/119 (5%)

Query: 1   MPKLMTGFVRASGYANKVRRVLFAVTR-----GKVEPEEVVRAAAEVNKAIFEKL-QELG 54
           +P L TG V A+GYA+KVRRVLFA  R     G++  ++V  AA  +N+ +FE L  +L 
Sbjct: 6   LPTLRTGLVIAAGYADKVRRVLFAQLRDAIKSGELSNKDVAMAAGNLNRVLFELLVNKLK 65

Query: 55  VKKEDVVRISIEFDIVDGKISWEYDTLNIEVYRKEEEEKLALAMEE-VEEMERTLEEVV 112
             K DVVRI I++++ D +I +++ TL +E++R+  EE++A  +E+      R LEE +
Sbjct: 66  ADKLDVVRIQIDYEVRDSQIQFDFSTLRVELWRRVPEEEIAPIVEDFARAAPRLLEEEI 124


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.133    0.342 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46848472
Number of Sequences: 2977
Number of extensions: 1763425
Number of successful extensions: 20042
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 20039
Number of HSP's gapped (non-prelim): 3
length of query: 148
length of database: 189,106,746
effective HSP length: 62
effective length of query: 86
effective length of database: 152,000,552
effective search space: 13072047472
effective search space used: 13072047472
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 161 (67.1 bits)