BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1632 (PAB1632) DE:Hypothetical protein
         (155 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75090 hypothetical protein PAB1632 - Pyrococcus abyssi (st...   302  1e-81
pir||H71052 hypothetical protein PH1119 - Pyrococcus horikoshii ...   112  2e-24

>pir||C75090 hypothetical protein PAB1632 - Pyrococcus abyssi (strain Orsay)
           >gi|5458536|emb|CAB50024.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 155
           
 Score =  302 bits (766), Expect = 1e-81
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MRGIFTVVLVMLITLTGISLSYFVFSHAVIGALRNCDVEVINVTVSDVNVDHATVVVELK 60
           MRGIFTVVLVMLITLTGISLSYFVFSHAVIGALRNCDVEVINVTVSDVNVDHATVVVELK
Sbjct: 1   MRGIFTVVLVMLITLTGISLSYFVFSHAVIGALRNCDVEVINVTVSDVNVDHATVVVELK 60

Query: 61  VKNNGKEDAVIDKLEASLFLDSTPIGYKEVENITVNAGSFILLKLNYTVTFSNVDTKIIK 120
           VKNNGKEDAVIDKLEASLFLDSTPIGYKEVENITVNAGSFILLKLNYTVTFSNVDTKIIK
Sbjct: 61  VKNNGKEDAVIDKLEASLFLDSTPIGYKEVENITVNAGSFILLKLNYTVTFSNVDTKIIK 120

Query: 121 SIVENDTKLNWTVVGSLKTNTPLGEIGRSFKLSSQ 155
           SIVENDTKLNWTVVGSLKTNTPLGEIGRSFKLSSQ
Sbjct: 121 SIVENDTKLNWTVVGSLKTNTPLGEIGRSFKLSSQ 155


>pir||H71052 hypothetical protein PH1119 - Pyrococcus horikoshii
           >gi|3257535|dbj|BAA30218.1| (AP000005) 156aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 156
           
 Score =  112 bits (278), Expect = 2e-24
 Identities = 57/154 (37%), Positives = 93/154 (60%), Gaps = 1/154 (0%)

Query: 1   MRGIFTVVLVMLITLTGISLSYFVFSHAVIGALRNCDVEVINVTVSDVNVDHATVVVELK 60
           M+  F V L ++++L G+   YF   H VIG L +  V ++NVTVS V +DHA + V ++
Sbjct: 1   MKKAFLVPLFIILSLIGVGAGYFTLIHFVIGDLGDVRVNLVNVTVSRVELDHAVITVTIE 60

Query: 61  VKNNGKEDAVIDKLEASLFLDSTPIGYKEVENITVNAGSFILLKLNYTVTFSNVDTKIIK 120
           + N  K +  ID +  SL+  S  IG  + +N+TV     + +KL++ V +S+ D ++I+
Sbjct: 61  LVNPAKREVKIDVMSVSLYAGSYYIGDVKKKNVTVRPNGKVFIKLDFPVYYSSTDPELIR 120

Query: 121 SIVENDT-KLNWTVVGSLKTNTPLGEIGRSFKLS 153
            IV+N T  + W + G L  NT +GEIG+SF ++
Sbjct: 121 VIVKNKTLDIKWRISGKLGINTSVGEIGKSFNIT 154


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.135    0.368 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49788974
Number of Sequences: 2977
Number of extensions: 1878721
Number of successful extensions: 5667
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5664
Number of HSP's gapped (non-prelim): 2
length of query: 155
length of database: 189,106,746
effective HSP length: 58
effective length of query: 97
effective length of database: 154,394,500
effective search space: 14976266500
effective search space used: 14976266500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)