BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1634 (PAB1634) DE:Hypothetical protein
         (207 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75089 hypothetical protein PAB1634 - Pyrococcus abyssi (st...   400  e-111
pir||G71053 hypothetical protein PH1126 - Pyrococcus horikoshii ...   364  e-100

>pir||F75089 hypothetical protein PAB1634 - Pyrococcus abyssi (strain Orsay)
           >gi|5458531|emb|CAB50019.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 207
           
 Score =  400 bits (1017), Expect = e-111
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MIPVKFKGATFGRLVRIEFEILRLGELKIDDLSEFNTSEIKLEVRSTSSGIKLVGIWEGD 60
           MIPVKFKGATFGRLVRIEFEILRLGELKIDDLSEFNTSEIKLEVRSTSSGIKLVGIWEGD
Sbjct: 1   MIPVKFKGATFGRLVRIEFEILRLGELKIDDLSEFNTSEIKLEVRSTSSGIKLVGIWEGD 60

Query: 61  IERVGEAIKKALEESMKLREKLLRKMRSKVERIRKTLIEMGFKEESMGYGDVVRFMKKIG 120
           IERVGEAIKKALEESMKLREKLLRKMRSKVERIRKTLIEMGFKEESMGYGDVVRFMKKIG
Sbjct: 61  IERVGEAIKKALEESMKLREKLLRKMRSKVERIRKTLIEMGFKEESMGYGDVVRFMKKIG 120

Query: 121 EYEVAIIVSSRDDFVRVEVYGGNRKLLAPELEAFFESVDIEELEIYDVDEEGREERVVIN 180
           EYEVAIIVSSRDDFVRVEVYGGNRKLLAPELEAFFESVDIEELEIYDVDEEGREERVVIN
Sbjct: 121 EYEVAIIVSSRDDFVRVEVYGGNRKLLAPELEAFFESVDIEELEIYDVDEEGREERVVIN 180

Query: 181 LELPKTDDKPEKRIAEAVKVLENILMA 207
           LELPKTDDKPEKRIAEAVKVLENILMA
Sbjct: 181 LELPKTDDKPEKRIAEAVKVLENILMA 207


>pir||G71053 hypothetical protein PH1126 - Pyrococcus horikoshii
           >gi|3257542|dbj|BAA30225.1| (AP000005) 207aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 207
           
 Score =  364 bits (925), Expect = e-100
 Identities = 179/207 (86%), Positives = 198/207 (95%)

Query: 1   MIPVKFKGATFGRLVRIEFEILRLGELKIDDLSEFNTSEIKLEVRSTSSGIKLVGIWEGD 60
           MIPVKFKGATFGRLV++EFEILRLGELKIDD+SEFNT +IKLE+R+TSSGIKL+G+WEGD
Sbjct: 1   MIPVKFKGATFGRLVKLEFEILRLGELKIDDISEFNTKDIKLEIRATSSGIKLIGVWEGD 60

Query: 61  IERVGEAIKKALEESMKLREKLLRKMRSKVERIRKTLIEMGFKEESMGYGDVVRFMKKIG 120
           I  VGEAIK+AL+ESMKLRE+LLRKMR+KVERIRKTL EMGF EES+GYGD +RF K+IG
Sbjct: 61  ISEVGEAIKRALDESMKLRERLLRKMRNKVERIRKTLTEMGFSEESIGYGDAIRFTKRIG 120

Query: 121 EYEVAIIVSSRDDFVRVEVYGGNRKLLAPELEAFFESVDIEELEIYDVDEEGREERVVIN 180
           EYEVAI+VSSRDD VRVEVYGGN+KLLAPELEAFFESVDIEELEIYDVDE+GREERVVIN
Sbjct: 121 EYEVAIVVSSRDDIVRVEVYGGNKKLLAPELEAFFESVDIEELEIYDVDEDGREERVVIN 180

Query: 181 LELPKTDDKPEKRIAEAVKVLENILMA 207
           LELPKTD+KPEKRI EAVKVLENILMA
Sbjct: 181 LELPKTDEKPEKRIIEAVKVLENILMA 207


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.139    0.369 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69079307
Number of Sequences: 2977
Number of extensions: 2779963
Number of successful extensions: 16824
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16822
Number of HSP's gapped (non-prelim): 2
length of query: 207
length of database: 189,106,746
effective HSP length: 59
effective length of query: 148
effective length of database: 153,796,013
effective search space: 22761809924
effective search space used: 22761809924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 163 (67.9 bits)