BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1639 (PAB1639) DE:Hypothetical protein
(215 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75088 hypothetical protein PAB1639 - Pyrococcus abyssi (st... 421 e-117
pir||C71056 hypothetical protein PH1145 - Pyrococcus horikoshii ... 237 9e-62
pir||B71056 hypothetical protein PH1144 - Pyrococcus horikoshii ... 94 1e-18
pir||E75219 hypothetical protein PAB2167 - Pyrococcus abyssi (st... 91 8e-18
pir||A75088 hypothetical protein PAB1640 - Pyrococcus abyssi (st... 88 7e-17
pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii ... 84 1e-15
pir||D71165 hypothetical protein PH0521 - Pyrococcus horikoshii ... 81 9e-15
pir||A75032 hypothetical protein PAB1558 - Pyrococcus abyssi (st... 79 4e-14
pir||C75213 hypothetical protein PAB0156 - Pyrococcus abyssi (st... 68 7e-11
>pir||B75088 hypothetical protein PAB1639 - Pyrococcus abyssi (strain Orsay)
>gi|5458519|emb|CAB50007.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 421 bits (1072), Expect = e-117
Identities = 215/215 (100%), Positives = 215/215 (100%)
Query: 1 MNTVIDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLR 60
MNTVIDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLR
Sbjct: 1 MNTVIDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLR 60
Query: 61 VLGIDEDFRDVYVVKTGGKYNVGNVVARVPFHPDPRVYIQLYAEKTSSLKIDGYLNISLG 120
VLGIDEDFRDVYVVKTGGKYNVGNVVARVPFHPDPRVYIQLYAEKTSSLKIDGYLNISLG
Sbjct: 61 VLGIDEDFRDVYVVKTGGKYNVGNVVARVPFHPDPRVYIQLYAEKTSSLKIDGYLNISLG 120
Query: 121 IEDLFSSLTSPHEMYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTVI 180
IEDLFSSLTSPHEMYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTVI
Sbjct: 121 IEDLFSSLTSPHEMYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTVI 180
Query: 181 RASQDLEKVRITILKSTNIELIGKEFKFSMEGLLW 215
RASQDLEKVRITILKSTNIELIGKEFKFSMEGLLW
Sbjct: 181 RASQDLEKVRITILKSTNIELIGKEFKFSMEGLLW 215
>pir||C71056 hypothetical protein PH1145 - Pyrococcus horikoshii
>gi|3257562|dbj|BAA30245.1| (AP000005) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 237 bits (598), Expect = 9e-62
Identities = 113/212 (53%), Positives = 157/212 (73%), Gaps = 4/212 (1%)
Query: 4 VIDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLRVLG 63
++D IKFGET I+ YP SY+RE ++ L +++ N+P++IDDNLD+L++V RNL++LG
Sbjct: 7 LLDEIKFGETTILFYPGLSYIREFIILKILNHAKIRNIPVIIDDNLDALSIVSRNLKILG 66
Query: 64 IDEDFRDVYVVKTGGKYNVGNVVARVPFHPDPRVYIQLYAEKTS-SLK---IDGYLNISL 119
EDF+D YVVKTGG+ N+G ++ RV HPDPRVYIQ Y+E SLK I+ ++NI L
Sbjct: 67 FAEDFQDAYVVKTGGRQNIGKIITRVRLHPDPRVYIQEYSENIQRSLKEHRIERFINIVL 126
Query: 120 GIEDLFSSLTSPHEMYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTV 179
GIEDLF L SPHE+Y+L+L+IQRFLG+ RRKA YI+NE+SL+ +P ++ EL R+A+T+
Sbjct: 127 GIEDLFRYLNSPHEVYLLVLAIQRFLGDKRRKAFYIVNENSLKVLPPQVYLELMRVATTI 186
Query: 180 IRASQDLEKVRITILKSTNIELIGKEFKFSME 211
IRA + +TI+KS N LIGKE +E
Sbjct: 187 IRAVPNFITANLTIIKSLNPGLIGKEISLELE 218
>pir||B71056 hypothetical protein PH1144 - Pyrococcus horikoshii
>gi|3257561|dbj|BAA30244.1| (AP000005) 218aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 218
Score = 94.0 bits (230), Expect = 1e-18
Identities = 58/207 (28%), Positives = 113/207 (54%), Gaps = 3/207 (1%)
Query: 9 KFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLRVLGIDEDF 68
KFGET +V S + E L + L+Y++ +P+LI+D LD+ + ++L+++ + D
Sbjct: 12 KFGETILVENDSPLGI-EALTSYILEYAKQEKLPVLIEDILDTFPIYIKHLKLMNRELDL 70
Query: 69 RDVYVVKTGGKYNVGNVVARVPFHPDPRVYIQLY-AEKTSSLKIDGYLNISLGIEDLFSS 127
V V+K GG ++GNVV+R+ DP +YI Y AE + + ++++ G++ LF+
Sbjct: 71 SSVNVMKIGGVEDIGNVVSRLKLESDPSIYISRYTAEFSRVASKENFIDMIFGVDRLFTL 130
Query: 128 LTSPHEMYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTVIRASQDLE 187
+ Y ++ S++++ R A Y + + + +P LE + ++V+ +Q+ +
Sbjct: 131 DDTGVLTYEILASMKQYSTRKDRLAFYFVEKKIIENIPTNPLLALEDIGTSVLMLNQERD 190
Query: 188 KVRITILKST-NIELIGKEFKFSMEGL 213
+ I +K +I+ KE K S+E L
Sbjct: 191 ILIIKFVKDAWSIKSKVKEIKISIEDL 217
>pir||E75219 hypothetical protein PAB2167 - Pyrococcus abyssi (strain Orsay)
>gi|5457713|emb|CAB49204.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 219
Score = 91.3 bits (223), Expect = 8e-18
Identities = 67/207 (32%), Positives = 110/207 (52%), Gaps = 5/207 (2%)
Query: 4 VIDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLRVLG 63
++DN+KFGET ++ + S + + L LK++R+ ++I D LD+L + + L +LG
Sbjct: 11 IMDNVKFGETLLLEHDSQ-IIPGIGLYYILKWARARGYEVIIYDILDTLRVYRIQLELLG 69
Query: 64 IDEDFRD-VYVVKTGGKYNVGNVVARVPFHPDPRVYIQLYAEKTSSLKID--GYLNISLG 120
+D + V+K GG++ VGNVV R+ V + Y + L D + I LG
Sbjct: 70 LDPSIVEYAKVIKEGGRFYVGNVVKRLS-EVGVSVREKEYEKVEEDLARDHENIVTIVLG 128
Query: 121 IEDLFSSLTSPHEMYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTVI 180
+E LF S ++ L+ SI + G+ RR IY +N D ++ + LE +A+TVI
Sbjct: 129 LEKLFLLSQSKQDIMALLNSILKHSGDRRRLTIYTVNVDIVKVATPFVIPLLEEIATTVI 188
Query: 181 RASQDLEKVRITILKSTNIELIGKEFK 207
+ + K+ + I KS + EL K FK
Sbjct: 189 KTKIEDFKIVLRIPKSVDRELRRKTFK 215
>pir||A75088 hypothetical protein PAB1640 - Pyrococcus abyssi (strain Orsay)
>gi|5458518|emb|CAB50006.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 219
Score = 88.2 bits (215), Expect = 7e-17
Identities = 52/192 (27%), Positives = 102/192 (53%), Gaps = 2/192 (1%)
Query: 5 IDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLRVLGI 64
++N +GET ++ S V +LL +K+ R+ ++P+LI+D LD+ L +++ ++G+
Sbjct: 9 LENKHYGETVLIENSSILGVEAILL-LLIKHYRNKSIPVLIEDILDTFPLYLKHITLMGV 67
Query: 65 DEDFRDVYVVKTGGKYNVGNVVARVPFHPDPRVYIQLYAEKTSSLK-IDGYLNISLGIED 123
D +V V+K GG +VGN+ +++ DP +Y+ Y + + + +++I LG +
Sbjct: 68 KLDMSNVKVMKIGGSEDVGNITSKIKMESDPSMYLSRYGNEFQRVSPQENFIDIVLGFDR 127
Query: 124 LFSSLTSPHEMYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTVIRAS 183
LF ++ ++ + + + R A YI+ + L + LE LA++V+ S
Sbjct: 128 LFVLDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLATSVLELS 187
Query: 184 QDLEKVRITILK 195
QD + I LK
Sbjct: 188 QDRNLLIIKFLK 199
>pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii
>gi|3257271|dbj|BAA29954.1| (AP000003) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 84.3 bits (205), Expect = 1e-15
Identities = 62/224 (27%), Positives = 116/224 (51%), Gaps = 20/224 (8%)
Query: 1 MNTVIDNIKFGETAIVLYPSNSYVREL-LLNSALKYSRSNNVPILIDDNLDSLALVQRNL 59
+ + + KFGE ++L+ NS L ++ +K++R P++I D DSL + +
Sbjct: 4 LEDLFEKSKFGE--LILFEYNSTTPLLFIVYPLIKWAREKGYPLVIFDIFDSLTIYTKQA 61
Query: 60 RVLGI-DEDFRDVYVVKTGGKYNVGNVVARV------PFHPDPRVYIQ-LYAEKTSSLKI 111
+LGI D+ + +VK GG+ N+GN++ ++ PF ++ Y E+
Sbjct: 62 EMLGIKDKLYEGANIVKIGGRMNLGNIILKISIIEYGPFEKTLEDTLEKAYGER------ 115
Query: 112 DGYLNISLGIEDLFSSLTSPHE-MYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKF 170
+ ++I LG E +FS + M+ L+++ G+ RRKA Y +N D L + +
Sbjct: 116 ENVISIVLGTEKIFSFYPFRDQFMFSNFLALKT--GDRRRKAFYFVNVDLLEKISPPMGP 173
Query: 171 ELERLASTVIRASQDLEKVRITILKSTNIELIGKEFKFSMEGLL 214
LE +TV++ +++ K+++ ++KS N EL G E K + L+
Sbjct: 174 LLEEEFTTVVKLTKEDNKIKMKVIKSLNPELDGMELKVNAHTLI 217
>pir||D71165 hypothetical protein PH0521 - Pyrococcus horikoshii
>gi|3256926|dbj|BAA29609.1| (AP000002) 226aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 226
Score = 81.1 bits (197), Expect = 9e-15
Identities = 60/211 (28%), Positives = 111/211 (52%), Gaps = 6/211 (2%)
Query: 6 DNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLRVLGID 65
+ KFGE+ ++ + S S+ + S + +++ I++ D LD+L + + ++ G+D
Sbjct: 11 EKTKFGESILIEFNSVSFP-SFGVYSLINWAKEKGYNIVVVDVLDTLKIYMGHEKIAGLD 69
Query: 66 EDF-RDVYVVKTGGKYNVGNVVARVPFHPDPRVYIQLYAEKTSSLKIDGYLNISLGIEDL 124
DV V+K GG+ +G ++AR+ + + +L +K + + I LGIE +
Sbjct: 70 TGIIDDVTVIKIGGRIEIGKILARILITEEKLLENEL-TRLCKEIKKEKTIIIILGIEKV 128
Query: 125 FSSLTSPHEMYVLILS--IQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTVIRA 182
S L S + + VL L I F+G +K+ Y IN D + +P + LE A+TVI+
Sbjct: 129 LS-LYSTYTLDVLSLINFILSFIGEEWKKSFYFINVDMMSHLPFPVLQLLEEFATTVIKI 187
Query: 183 SQDLEKVRITILKSTNIELIGKEFKFSMEGL 213
+ + T+LK+ N+EL G E + +++ L
Sbjct: 188 VKKGSVLHYTVLKALNVELDGFEGRVNLKAL 218
>pir||A75032 hypothetical protein PAB1558 - Pyrococcus abyssi (strain Orsay)
>gi|5458663|emb|CAB50150.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 209
Score = 79.2 bits (192), Expect = 4e-14
Identities = 65/214 (30%), Positives = 109/214 (50%), Gaps = 20/214 (9%)
Query: 1 MNTVIDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLR 60
+ + + IKFGE A++ Y SN+ +L+S L +S I+I D DSL + ++
Sbjct: 2 LKEIFNGIKFGEIALIEYDSNT-TPVYVLHSLLSWSEEKGYKIVIFDVFDSLIVYRKMAE 60
Query: 61 VLGIDEDF-RDVYVVKTGGKYNVGNVVARV------PFHPDPRVYI-QLYAEKTSSLKID 112
+LG D + VVK GG+ N GNVV ++ PF I Q+Y +KT
Sbjct: 61 LLGFDTSLCKKAKVVKVGGRVNEGNVVMKLTVTEYGPFEKVLEEAIEQVYEDKT------ 114
Query: 113 GYLNISLGIEDLFSSLTSPHEM-YVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFE 171
+ I LG E + S ++ + L+++ +G+ R+KA + IN D ++ V +I
Sbjct: 115 --IVIPLGTEKVLSLYPFREQLSFTNFLALR--VGDKRKKAFHFINTDLVKAVAPQILPM 170
Query: 172 LERLASTVIRASQDLEKVRITILKSTNIELIGKE 205
LE +TV+R + + ++ ++KS N +L G E
Sbjct: 171 LEESFTTVMRLKKYGKVEKLIVVKSLNPKLDGLE 204
>pir||C75213 hypothetical protein PAB0156 - Pyrococcus abyssi (strain Orsay)
>gi|5457663|emb|CAB49154.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 199
Score = 68.3 bits (164), Expect = 7e-11
Identities = 60/203 (29%), Positives = 92/203 (44%), Gaps = 12/203 (5%)
Query: 4 VIDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLRVLG 63
++ K GET +V Y S V L N + +P+L+DD D+ L+V G
Sbjct: 3 ILSLFKIGETVLVEYSGTSRVEALFYNLIARAG----LPVLVDDIFDTYYEFYVRLKVAG 58
Query: 64 ID-EDFRDVYVVKTGGKYNVGNVVARVPFHPDPRVYIQLYAEKTSSLKID-GYLNISLGI 121
D D VVK GG +GNVV + + Q YA +K D +LN+ LGI
Sbjct: 59 FDVTPLEDAMVVKMGGSRRIGNVVGELNISKYV-ISEQEYATIIEKIKKDKPFLNLVLGI 117
Query: 122 EDLFSSLTSPHEMYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTVIR 181
L L S E ++ + ++G R A Y IN+ + I LE +A++V+
Sbjct: 118 HKLI-ILGSILENMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLE 176
Query: 182 ASQDLEKVRITILKSTNIELIGK 204
++ + I K+ N E+IG+
Sbjct: 177 VTER----GVIIKKAINKEIIGE 195
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.139 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72281815
Number of Sequences: 2977
Number of extensions: 2888411
Number of successful extensions: 7198
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7181
Number of HSP's gapped (non-prelim): 9
length of query: 215
length of database: 189,106,746
effective HSP length: 57
effective length of query: 158
effective length of database: 154,992,987
effective search space: 24488891946
effective search space used: 24488891946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)