BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1640 (PAB1640) DE:Hypothetical protein
(219 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75088 hypothetical protein PAB1640 - Pyrococcus abyssi (st... 428 e-119
pir||B71056 hypothetical protein PH1144 - Pyrococcus horikoshii ... 257 5e-68
pir||C71056 hypothetical protein PH1145 - Pyrococcus horikoshii ... 102 3e-21
pir||C75213 hypothetical protein PAB0156 - Pyrococcus abyssi (st... 101 7e-21
pir||C71249 hypothetical protein PH0250 - Pyrococcus horikoshii ... 94 2e-18
pir||B75088 hypothetical protein PAB1639 - Pyrococcus abyssi (st... 88 7e-17
pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii ... 82 7e-15
pir||E75219 hypothetical protein PAB2167 - Pyrococcus abyssi (st... 80 2e-14
pir||D71165 hypothetical protein PH0521 - Pyrococcus horikoshii ... 71 8e-12
>pir||A75088 hypothetical protein PAB1640 - Pyrococcus abyssi (strain Orsay)
>gi|5458518|emb|CAB50006.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 219
Score = 428 bits (1089), Expect = e-119
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MVSEFYEFLENKHYGETVLIENSSILGVEAILLLLIKHYRNKSIPVLIEDILDTFPLYLK 60
MVSEFYEFLENKHYGETVLIENSSILGVEAILLLLIKHYRNKSIPVLIEDILDTFPLYLK
Sbjct: 1 MVSEFYEFLENKHYGETVLIENSSILGVEAILLLLIKHYRNKSIPVLIEDILDTFPLYLK 60
Query: 61 HITLMGVKLDMSNVKVMKIGGSEDVGNITSKIKMESDPSMYLSRYGNEFQRVSPQENFID 120
HITLMGVKLDMSNVKVMKIGGSEDVGNITSKIKMESDPSMYLSRYGNEFQRVSPQENFID
Sbjct: 61 HITLMGVKLDMSNVKVMKIGGSEDVGNITSKIKMESDPSMYLSRYGNEFQRVSPQENFID 120
Query: 121 IVLGFDRLFVLDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLA 180
IVLGFDRLFVLDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLA
Sbjct: 121 IVLGFDRLFVLDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLA 180
Query: 181 TSVLELSQDRNLLIIKFLKDPWAFRSGIKEISIPLEDIF 219
TSVLELSQDRNLLIIKFLKDPWAFRSGIKEISIPLEDIF
Sbjct: 181 TSVLELSQDRNLLIIKFLKDPWAFRSGIKEISIPLEDIF 219
>pir||B71056 hypothetical protein PH1144 - Pyrococcus horikoshii
>gi|3257561|dbj|BAA30244.1| (AP000005) 218aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 218
Score = 257 bits (651), Expect = 5e-68
Identities = 117/212 (55%), Positives = 169/212 (79%)
Query: 7 EFLENKHYGETVLIENSSILGVEAILLLLIKHYRNKSIPVLIEDILDTFPLYLKHITLMG 66
EFL++K +GET+L+EN S LG+EA+ ++++ + + +PVLIEDILDTFP+Y+KH+ LM
Sbjct: 6 EFLKSKKFGETILVENDSPLGIEALTSYILEYAKQEKLPVLIEDILDTFPIYIKHLKLMN 65
Query: 67 VKLDMSNVKVMKIGGSEDVGNITSKIKMESDPSMYLSRYGNEFQRVSPQENFIDIVLGFD 126
+LD+S+V VMKIGG ED+GN+ S++K+ESDPS+Y+SRY EF RV+ +ENFID++ G D
Sbjct: 66 RELDLSSVNVMKIGGVEDIGNVVSRLKLESDPSIYISRYTAEFSRVASKENFIDMIFGVD 125
Query: 127 RLFVLDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLATSVLEL 186
RLF LD LT E+L + K Y+ RK+RLAFY VEK ++EN+ +PL+ LE++ TSVL L
Sbjct: 126 RLFTLDDTGVLTYEILASMKQYSTRKDRLAFYFVEKKIIENIPTNPLLALEDIGTSVLML 185
Query: 187 SQDRNLLIIKFLKDPWAFRSGIKEISIPLEDI 218
+Q+R++LIIKF+KD W+ +S +KEI I +ED+
Sbjct: 186 NQERDILIIKFVKDAWSIKSKVKEIKISIEDL 217
>pir||C71056 hypothetical protein PH1145 - Pyrococcus horikoshii
>gi|3257562|dbj|BAA30245.1| (AP000005) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 102 bits (253), Expect = 3e-21
Identities = 71/220 (32%), Positives = 121/220 (54%), Gaps = 13/220 (5%)
Query: 5 FYEFLENKHYGETVLIENSSILGV-EAILLLLIKHYRNKSIPVLIEDILDTFPLYLKHIT 63
F E L+ +GET ++ + + E I+L ++ H + ++IPV+I+D LD + +++
Sbjct: 4 FEELLDEIKFGETTILFYPGLSYIREFIILKILNHAKIRNIPVIIDDNLDALSIVSRNLK 63
Query: 64 LMGVKLDMSNVKVMKIGGSEDVGNITSKIKMESDPSMYLSRYGNEFQRVSPQ---ENFID 120
++G D + V+K GG +++G I +++++ DP +Y+ Y QR + E FI+
Sbjct: 64 ILGFAEDFQDAYVVKTGGRQNIGKIITRVRLHPDPRVYIQEYSENIQRSLKEHRIERFIN 123
Query: 121 IVLGFDRLF-VLDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENL 179
IVLG + LF L+S + + VL A + + K R AFYIV + L+ L P + L +
Sbjct: 124 IVLGIEDLFRYLNSPHEVYLLVL-AIQRFLGDKRRKAFYIVNENSLKVLPPQVYLELMRV 182
Query: 180 ATSVLELSQD---RNLLIIKFLKDPWAFRSGIKEISIPLE 216
AT+++ + NL IIK L +P KEIS+ LE
Sbjct: 183 ATTIIRAVPNFITANLTIIKSL-NPGLIG---KEISLELE 218
>pir||C75213 hypothetical protein PAB0156 - Pyrococcus abyssi (strain Orsay)
>gi|5457663|emb|CAB49154.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 199
Score = 101 bits (249), Expect = 7e-21
Identities = 64/186 (34%), Positives = 105/186 (56%), Gaps = 13/186 (6%)
Query: 15 GETVLIENSSILGVEAILLLLIKHYRNKSIPVLIEDILDTFPLYLKHITLMGVKLD-MSN 73
GETVL+E S VEA+ LI +PVL++DI DT+ + + + G + + +
Sbjct: 10 GETVLVEYSGTSRVEALFYNLIAR---AGLPVLVDDIFDTYYEFYVRLKVAGFDVTPLED 66
Query: 74 VKVMKIGGSEDVGNITSKIKMESDPSMYL---SRYGNEFQRVSPQENFIDIVLGFDRLFV 130
V+K+GGS +GN+ ++ + S Y+ Y +++ + F+++VLG +L +
Sbjct: 67 AMVVKMGGSRRIGNVVGELNI----SKYVISEQEYATIIEKIKKDKPFLNLVLGIHKLII 122
Query: 131 LDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLATSVLELSQDR 190
L S M V+K SY RK R+AFY + KG++ SP L +LE +ATSVLE++ +R
Sbjct: 123 LGSILE-NMNVVKMVSSYVGRKERVAFYFINKGVVNKHSPPILDLLEEVATSVLEVT-ER 180
Query: 191 NLLIIK 196
++I K
Sbjct: 181 GVIIKK 186
>pir||C71249 hypothetical protein PH0250 - Pyrococcus horikoshii
>gi|3256639|dbj|BAA29322.1| (AP000001) 207aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 207
Score = 93.6 bits (229), Expect = 2e-18
Identities = 59/197 (29%), Positives = 111/197 (55%), Gaps = 12/197 (6%)
Query: 7 EFLENKHYGETVLIENSSILGVEAILLLLIKHYRNKSIPVLIEDILDTFPLYLKHITLMG 66
+F + GETVL+E S E +L ++ N +P++++DILDT+ + + + G
Sbjct: 7 KFFKLFRVGETVLVEYSGTSRAELLLYYIVN---NSKLPIVVDDILDTYYEFYTRLKVAG 63
Query: 67 VKL-DMSNVKVMKIGGSEDVGNITSKIKMESDPSMYLSRYGNEFQRVSPQENF--IDIVL 123
+ + NV+V+K+GG++D+G + ++ + S Y+ + VS +++ I+ VL
Sbjct: 64 FDVAPLENVQVIKMGGTKDIGRVIGRLNI----SKYVISEQEYMEIVSQLKDYPVINPVL 119
Query: 124 GFDRLFVLDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLATSV 183
G +L +L + + V+K +Y R+ R+AFY V + ++E S L +LE + TS+
Sbjct: 120 GLHKLILLGNTFE-NINVVKMVSNYVGREERIAFYFVNRNVIEKHSSPILDLLEEVVTSI 178
Query: 184 LELSQDRNLLIIKFLKD 200
LE++ D ++I K +KD
Sbjct: 179 LEIT-DSGIIIKKSIKD 194
>pir||B75088 hypothetical protein PAB1639 - Pyrococcus abyssi (strain Orsay)
>gi|5458519|emb|CAB50007.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 215
Score = 88.2 bits (215), Expect = 7e-17
Identities = 52/192 (27%), Positives = 102/192 (53%), Gaps = 2/192 (1%)
Query: 9 LENKHYGETVLIENSSILGVEAILL-LLIKHYRNKSIPVLIEDILDTFPLYLKHITLMGV 67
++N +GET ++ S V +LL +K+ R+ ++P+LI+D LD+ L +++ ++G+
Sbjct: 5 IDNIKFGETAIVLYPSNSYVRELLLNSALKYSRSNNVPILIDDNLDSLALVQRNLRVLGI 64
Query: 68 KLDMSNVKVMKIGGSEDVGNITSKIKMESDPSMYLSRYGNEFQRVSPQENFIDIVLGFDR 127
D +V V+K GG +VGN+ +++ DP +Y+ Y + + + +++I LG +
Sbjct: 65 DEDFRDVYVVKTGGKYNVGNVVARVPFHPDPRVYIQLYAEKTSSLK-IDGYLNISLGIED 123
Query: 128 LFVLDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLATSVLELS 187
LF ++ ++ + + + R A YI+ + L + LE LA++V+ S
Sbjct: 124 LFSSLTSPHEMYVLILSIQRFLGNTRRKAIYIINEDSLRTVPKEIKFELERLASTVIRAS 183
Query: 188 QDRNLLIIKFLK 199
QD + I LK
Sbjct: 184 QDLEKVRITILK 195
>pir||H71136 hypothetical protein PH0860 - Pyrococcus horikoshii
>gi|3257271|dbj|BAA29954.1| (AP000003) 221aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 221
Score = 81.5 bits (198), Expect = 7e-15
Identities = 59/198 (29%), Positives = 97/198 (48%), Gaps = 10/198 (5%)
Query: 7 EFLENKHYGETVLIENSSILGVEAILLLLIKHYRNKSIPVLIEDILDTFPLYLKHITLMG 66
+ E +GE +L E +S + I+ LIK R K P++I DI D+ +Y K ++G
Sbjct: 6 DLFEKSKFGELILFEYNSTTPLLFIVYPLIKWAREKGYPLVIFDIFDSLTIYTKQAEMLG 65
Query: 67 VKLDM-SNVKVMKIGGSEDVGNITSKIKMESDPSMYLSRYGNEFQRVSPQENFIDIVLGF 125
+K + ++KIGG ++GNI KI + + + +EN I IVLG
Sbjct: 66 IKDKLYEGANIVKIGGRMNLGNIILKISIIEYGPFEKTLEDTLEKAYGERENVISIVLGT 125
Query: 126 DRLFVL----DSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLAT 181
+++F D LK T + R AFY V +LE +SP +LE T
Sbjct: 126 EKIFSFYPFRDQFMFSNFLALK-----TGDRRRKAFYFVNVDLLEKISPPMGPLLEEEFT 180
Query: 182 SVLELSQDRNLLIIKFLK 199
+V++L+++ N + +K +K
Sbjct: 181 TVVKLTKEDNKIKMKVIK 198
>pir||E75219 hypothetical protein PAB2167 - Pyrococcus abyssi (strain Orsay)
>gi|5457713|emb|CAB49204.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 219
Score = 80.0 bits (194), Expect = 2e-14
Identities = 57/199 (28%), Positives = 105/199 (52%), Gaps = 15/199 (7%)
Query: 9 LENKHYGETVLIENSSILGVEAILLLLIKHYRNKSIPVLIEDILDTFPLYLKHITLMGVK 68
++N +GET+L+E+ S + L ++K R + V+I DILDT +Y + L+G
Sbjct: 12 MDNVKFGETLLLEHDSQIIPGIGLYYILKWARARGYEVIIYDILDTLRVYRIQLELLG-- 69
Query: 69 LDMSNV---KVMKIGGSEDVGNITSKIKMESDPSMYLSRYGNEFQRVSPQ-----ENFID 120
LD S V KV+K GG VGN+ ++ + +S E+++V EN +
Sbjct: 70 LDPSIVEYAKVIKEGGRFYVGNVVKRLS-----EVGVSVREKEYEKVEEDLARDHENIVT 124
Query: 121 IVLGFDRLFVLDSASSLTMEVLKAAKSYTLRKNRLAFYIVEKGMLENLSPSPLVILENLA 180
IVLG ++LF+L + M +L + ++ + RL Y V +++ +P + +LE +A
Sbjct: 125 IVLGLEKLFLLSQSKQDIMALLNSILKHSGDRRRLTIYTVNVDIVKVATPFVIPLLEEIA 184
Query: 181 TSVLELSQDRNLLIIKFLK 199
T+V++ + ++++ K
Sbjct: 185 TTVIKTKIEDFKIVLRIPK 203
>pir||D71165 hypothetical protein PH0521 - Pyrococcus horikoshii
>gi|3256926|dbj|BAA29609.1| (AP000002) 226aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 226
Score = 71.4 bits (172), Expect = 8e-12
Identities = 54/196 (27%), Positives = 103/196 (52%), Gaps = 12/196 (6%)
Query: 10 ENKHYGETVLIENSSILGVEAILLLLIKHYRNKSIPVLIEDILDTFPLYLKHITLMGVKL 69
E +GE++LIE +S+ + LI + K +++ D+LDT +Y+ H + G+
Sbjct: 11 EKTKFGESILIEFNSVSFPSFGVYSLINWAKEKGYNIVVVDVLDTLKIYMGHEKIAGLDT 70
Query: 70 D-MSNVKVMKIGGSEDVGNITSKIKMESDPSM--YLSRYGNEFQRVSPQENFIDIVLGFD 126
+ +V V+KIGG ++G I ++I + + + L+R E ++ E I I+LG +
Sbjct: 71 GIIDDVTVIKIGGRIEIGKILARILITEEKLLENELTRLCKEIKK----EKTIIIILGIE 126
Query: 127 RLFVLDSASSLTMEVLKAAK---SYTLRKNRLAFYIVEKGMLENLSPSPLVILENLATSV 183
+ VL S+ T++VL S+ + + +FY + M+ +L L +LE AT+V
Sbjct: 127 K--VLSLYSTYTLDVLSLINFILSFIGEEWKKSFYFINVDMMSHLPFPVLQLLEEFATTV 184
Query: 184 LELSQDRNLLIIKFLK 199
+++ + ++L LK
Sbjct: 185 IKIVKKGSVLHYTVLK 200
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.140 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72560100
Number of Sequences: 2977
Number of extensions: 2721908
Number of successful extensions: 6350
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6333
Number of HSP's gapped (non-prelim): 9
length of query: 219
length of database: 189,106,746
effective HSP length: 57
effective length of query: 162
effective length of database: 154,992,987
effective search space: 25108863894
effective search space used: 25108863894
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)