BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1641 (PAB1641) DE:Hypothetical protein
(214 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75087 hypothetical protein PAB1641 - Pyrococcus abyssi (st... 437 e-122
pir||C71058 probable transcription regulator - Pyrococcus horiko... 372 e-102
pir||B72655 probable transcription activator TENA APE0669 - Aero... 198 6e-50
pir||C71837 probable transcription regulator - Helicobacter pylo... 121 8e-27
pir||G64680 transcription regulator - Helicobacter pylori (strai... 118 5e-26
dbj|BAB06398.1| (AP001516) transcriptional regulator of extracel... 114 8e-25
gb|AAK42720.1| Transcriptional activator (tenA-2) [Sulfolobus so... 109 2e-23
pir||G75087 transcription regulator PAB1642 - Pyrococcus abyssi ... 101 6e-21
sp|P44659|Y358_HAEIN HYPOTHETICAL PROTEIN HI0358 >gi|1075360|pir... 98 7e-20
gb|AAK42376.1| Transcriptional activator (tenA-1) [Sulfolobus so... 98 9e-20
sp|P25052|TENA_BACSU TRANSCRIPTIONAL ACTIVATOR TENA >gi|73039|pi... 95 8e-19
emb|CAC12603.1| (AL445067) hypothetical protein [Thermoplasma ac... 91 1e-17
pir||B71058 hypothetical protein PH1160 - Pyrococcus horikoshii ... 90 1e-17
pir||F81388 probable transcription regulator Cj0440c [imported] ... 86 3e-16
pir||T40812 probable thiamin biosynthesis protein - fission yeas... 83 3e-15
gi|6324517 Thi20p [Saccharomyces cerevisiae] >gi|2133057|pir||S6... 73 2e-12
emb|CAA62531.1| (X91067) transcription factor [Saccharomyces cer... 70 2e-11
gi|6325378 Thi22p [Saccharomyces cerevisiae] >gi|2132289|pir||S6... 70 2e-11
>pir||H75087 hypothetical protein PAB1641 - Pyrococcus abyssi (strain Orsay)
>gi|5458517|emb|CAB50005.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 214
Score = 437 bits (1111), Expect = e-122
Identities = 214/214 (100%), Positives = 214/214 (100%)
Query: 1 MITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASK 60
MITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASK
Sbjct: 1 MITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASK 60
Query: 61 ADYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYK 120
ADYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYK
Sbjct: 61 ADYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYK 120
Query: 121 GRVVEGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIID 180
GRVVEGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIID
Sbjct: 121 GRVVEGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIID 180
Query: 181 SLGGDYERLREIFITGSKFELAFWEMAWRGGDVF 214
SLGGDYERLREIFITGSKFELAFWEMAWRGGDVF
Sbjct: 181 SLGGDYERLREIFITGSKFELAFWEMAWRGGDVF 214
>pir||C71058 probable transcription regulator - Pyrococcus horikoshii
>gi|3257578|dbj|BAA30261.1| (AP000005) 218aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 218
Score = 372 bits (946), Expect = e-102
Identities = 177/215 (82%), Positives = 200/215 (92%), Gaps = 1/215 (0%)
Query: 1 MITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASK 60
MIT++LRRD++ IW+KIFEHPFVVQLYSG LP+EKFKFYVLQDFNYLVGLTRALAVI+SK
Sbjct: 4 MITDKLRRDSEQIWKKIFEHPFVVQLYSGTLPLEKFKFYVLQDFNYLVGLTRALAVISSK 63
Query: 61 ADYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYK 120
A+YPL+AELIELAR+E+T E++NY +LLKEL LTLEDAIKTEPTLVNSAYMDFML+TAYK
Sbjct: 64 AEYPLMAELIELARDEVTVEVENYVKLLKELDLTLEDAIKTEPTLVNSAYMDFMLATAYK 123
Query: 121 GRVVEGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIID 180
G ++EGLTALLPCFWSYAEIAEYHKDKL NP++IYREWG+VYLS EYL+LV RLR+IID
Sbjct: 124 GNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKIYREWGKVYLSNEYLNLVGRLRKIID 183
Query: 181 SLG-GDYERLREIFITGSKFELAFWEMAWRGGDVF 214
S G Y+RLR IFITGSKFELAFWEMAWRGGDVF
Sbjct: 184 SSGHSGYDRLRRIFITGSKFELAFWEMAWRGGDVF 218
>pir||B72655 probable transcription activator TENA APE0669 - Aeropyrum pernix
(strain K1) >gi|5104327|dbj|BAA79642.1| (AP000060) 228aa
long hypothetical transcriptional activator TENA
[Aeropyrum pernix]
Length = 228
Score = 198 bits (497), Expect = 6e-50
Identities = 96/214 (44%), Positives = 139/214 (64%), Gaps = 5/214 (2%)
Query: 1 MITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASK 60
++++RL+RD +W + HPFV LYSG+LP++KF+FY +QD+NYLVGL R+L++ ASK
Sbjct: 9 LLSDRLKRDNMDLWSLLPSHPFVKALYSGSLPLDKFRFYAVQDYNYLVGLVRSLSIAASK 68
Query: 61 A-DYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAY 119
+ + + + A +TEM NYE LL ELGL+L + ++ EP N AY++FM++T
Sbjct: 69 SWSFEVARLALSHASFLASTEMANYERLLGELGLSLSEVLREEPAPTNEAYVNFMIATCS 128
Query: 120 KGRVVEGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREII 179
G +E + +LLPC+WSY EIA ++ L N V++YR W VYLS EY V R +
Sbjct: 129 TGTALECMVSLLPCYWSYREIAIANERLLRENSVDLYRRWASVYLSSEYGEAVEEYRRAV 188
Query: 180 DSL----GGDYERLREIFITGSKFELAFWEMAWR 209
D L GG Y RL+ IF +++E FW+MAWR
Sbjct: 189 DRLWAEEGGVYSRLKRIFRKATRYEYMFWDMAWR 222
>pir||C71837 probable transcription regulator - Helicobacter pylori (strain
J99) >gi|4155800|gb|AAD06775.1| (AE001546) putative
TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 217
Score = 121 bits (300), Expect = 8e-27
Identities = 66/214 (30%), Positives = 115/214 (52%), Gaps = 6/214 (2%)
Query: 2 ITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKA 61
+++ L ++A IW HPFV + G L +KF+FY++QD+ +L+ + A+ KA
Sbjct: 3 VSQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKA 62
Query: 62 -DYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYK 120
D ++ E ++ + EM + ++EL +T ++ PTL N +Y +ML+ +K
Sbjct: 63 CDEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFK 122
Query: 121 GRVVEGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIID 180
G + E A+L C WSY IA+ + Y W + Y S+E+ + V+ ++D
Sbjct: 123 GSIKEVAVAVLACGWSYLVIAQNLSQIPNALEDAFYGHWIKGYSSKEFQACVTWNINLLD 182
Query: 181 SLG-----GDYERLREIFITGSKFELAFWEMAWR 209
SL + E+L+EIFI S++E FW+MA++
Sbjct: 183 SLALASSKQEIEKLKEIFIATSEYEYQFWDMAYQ 216
>pir||G64680 transcription regulator - Helicobacter pylori (strain 26695)
>gi|2314455|gb|AAD08332.1| (AE000633) transcriptional
regulator (tenA) [Helicobacter pylori 26695]
Length = 217
Score = 118 bits (293), Expect = 5e-26
Identities = 64/214 (29%), Positives = 114/214 (52%), Gaps = 6/214 (2%)
Query: 2 ITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKA 61
+++ L ++ IW HPFV + G L +KF+FY++QD+ +L+ + A+ KA
Sbjct: 3 VSQYLYQNVQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKA 62
Query: 62 -DYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYK 120
D ++ E ++ + EM + ++ L +T ++ PTL N +Y +ML+ +K
Sbjct: 63 CDEAVMREFSNAIQDILNNEMSIHNHYIRGLQITQKELQNARPTLANKSYTSYMLAEGFK 122
Query: 121 GRVVEGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIID 180
G + E A+L C WSY IA+ + Y W + Y S+E+ + V+ ++D
Sbjct: 123 GSIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFYGHWIKGYSSKEFQACVNWNINLLD 182
Query: 181 SL-----GGDYERLREIFITGSKFELAFWEMAWR 209
SL + E+L++IFIT S++E FW+MA++
Sbjct: 183 SLTLTSSKQEIEKLKDIFITTSEYEYLFWDMAYQ 216
>dbj|BAB06398.1| (AP001516) transcriptional regulator of extracellular enzyme genes
[Bacillus halodurans]
Length = 224
Score = 114 bits (283), Expect = 8e-25
Identities = 65/209 (31%), Positives = 104/209 (49%), Gaps = 6/209 (2%)
Query: 6 LRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKA-DYP 64
L A IW + HPFV + G+L KF+F++ QD+ YL+ R A+ K D
Sbjct: 7 LYEKAQPIWEAGYNHPFVQGIGDGSLEKSKFQFFMKQDYLYLIDYARLFALGTLKGNDLQ 66
Query: 65 LLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYKGRVV 124
++ +L + EM + K LG++ E+ EP AY +ML+ A +G ++
Sbjct: 67 TMSTFSKLLHATLNVEMDLHRAYAKRLGISAEELEAIEPAATTLAYTSYMLNVAQRGSLL 126
Query: 125 EGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIIDS--- 181
+ + A+LPC WSY EI K + Y EW ++Y S+E+ L L +++D
Sbjct: 127 DLIAAVLPCTWSYYEIGVKLKGIPGASDHPFYGEWIKLYASDEFKELADWLIQMLDEEAK 186
Query: 182 --LGGDYERLREIFITGSKFELAFWEMAW 208
+ +L IF+T S+ E FW+MA+
Sbjct: 187 GLSSKEKAKLETIFLTTSRLENEFWDMAY 215
>gb|AAK42720.1| Transcriptional activator (tenA-2) [Sulfolobus solfataricus]
Length = 224
Score = 109 bits (271), Expect = 2e-23
Identities = 68/212 (32%), Positives = 118/212 (55%), Gaps = 11/212 (5%)
Query: 3 TERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKAD 62
+E+L I+ I HPF+++L G L +KFK+Y++QD+ YL ++ALA++A+KA+
Sbjct: 5 SEKLWNFISDIYSSILRHPFILELVEGILSRDKFKYYIIQDYLYLREFSKALALLAAKAE 64
Query: 63 YPLLAELIEL-AREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYKG 121
L ++ I E ++ +KE L +ED + PT N AY ++L+ AY
Sbjct: 65 DEEQTLLFTTHIQDAIKVEKALHKFYIKEFNLDIED-YEMSPT--NLAYTSYLLAVAYSR 121
Query: 122 RVVEGLTALLPCFWSYAEIAEYHKDKL-DGNPVEIYREWGRVYLSEEYLSLVSRLREIID 180
E ++A+LPC+W Y ++ K+ L G+ + Y++W Y EEY V + +I++
Sbjct: 122 PFNEVISAVLPCYWIYMKVG---KELLKQGSKDKYYQKWIETYGGEEYEKGVRAVLDIVN 178
Query: 181 SL---GGDYERLREIFITGSKFELAFWEMAWR 209
SL ++ +++ F T S +E FW+ A+R
Sbjct: 179 SLKVSEEEFNKMKIHFRTASIYEYMFWDSAYR 210
>pir||G75087 transcription regulator PAB1642 - Pyrococcus abyssi (strain Orsay)
>gi|5458516|emb|CAB50004.1| (AJ248286) TRANSCRIPTIONAL
REGULATOR [Pyrococcus abyssi]
Length = 224
Score = 101 bits (250), Expect = 6e-21
Identities = 67/217 (30%), Positives = 120/217 (54%), Gaps = 16/217 (7%)
Query: 1 MITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASK 60
M +E L R+A IW+K H F+ ++ G + E F +++ D+ ++ R +A++ +K
Sbjct: 3 MFSEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILMAK 62
Query: 61 ADYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYK 120
A LL E + I+ E+ ++E ++LG+ LE I AY++++L+TAY
Sbjct: 63 APDNLLGFFAE-SIYYISQELTMFKENAEKLGVELEGEIDWRA----KAYVNYLLNTAYA 117
Query: 121 GRVVEGLTALLPCFWSYAEIAEYHKDKL-DGNP-VEIYREWGRVYLSEEYLSLVSRLREI 178
G +EG TA +Y E ++ K+ L + +P ++ W SE++ V R+ EI
Sbjct: 118 GSFLEGFTAFYCEERAYYEAWKWVKENLKEKSPYIDFINHWS----SEDFRKYVERIEEI 173
Query: 179 IDSLG---GDY--ERLREIFITGSKFELAFWEMAWRG 210
++SL GD+ ER +++F+ S+FEL FW++A+ G
Sbjct: 174 LNSLAEMHGDFEKERAKKVFLEVSEFELLFWDIAYGG 210
>sp|P44659|Y358_HAEIN HYPOTHETICAL PROTEIN HI0358 >gi|1075360|pir||D64063 transcription
activator homolog HI0358 - Haemophilus influenzae
(strain Rd KW20) >gi|1573326|gb|AAC22017.1| (U32720)
transcriptional activator, putative [Haemophilus
influenzae Rd]
Length = 215
Score = 98.3 bits (241), Expect = 7e-20
Identities = 61/211 (28%), Positives = 100/211 (46%), Gaps = 11/211 (5%)
Query: 4 ERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKADY 63
E+L + A W++ EH FV QL G LP F+ Y+ QD+ YL +RA A+ KA
Sbjct: 3 EQLIQQAQPYWQQYIEHEFVQQLAKGTLPKACFQHYLKQDYLYLFHYSRAFALGVFKAKN 62
Query: 64 PLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYKGRV 123
E E + E++ + +E G++ ++ T+ + AY ++L G +
Sbjct: 63 FAEMETPRKTLEILCQEIQLHLNYCREWGISEQEIFTTQESAACIAYTRYLLDCGMTGSL 122
Query: 124 VEGLTALLPCFWSYAEIAEY---HKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIID 180
E A+ PC YA++A Y H +L NP Y+ W Y SEE+ + +
Sbjct: 123 AELYAAVTPCALGYAQVARYITQHYPRLPNNP---YQTWIDTYASEEFQQAAQETVDFLT 179
Query: 181 SL-----GGDYERLREIFITGSKFELAFWEM 206
+L +++IF T ++ E+AFW+M
Sbjct: 180 ALCKPLNPSQLAEIQQIFTTATRMEIAFWQM 210
>gb|AAK42376.1| Transcriptional activator (tenA-1) [Sulfolobus solfataricus]
Length = 213
Score = 97.9 bits (240), Expect = 9e-20
Identities = 55/206 (26%), Positives = 103/206 (49%), Gaps = 6/206 (2%)
Query: 4 ERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKADY 63
E L +W K +H F++++ G+LP++ F++Y++QD Y+ + RAL + +SK
Sbjct: 8 ENLINGVGELWNKYVKHEFILKMRDGSLPLDIFRYYLIQDGKYVEDMLRALLIASSKGPI 67
Query: 64 PLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYKGRV 123
+ +++ L ++ + +L +L ++ + +KT L+N AY + A
Sbjct: 68 DKVTKILNLVFSSRDKGLETHGKLYSKLDISRDVIVKTGYNLINYAYTRHLYYYANLD-W 126
Query: 124 VEGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIIDSLG 183
+ L A PC + Y+ + +Y D +P E+Y+ W Y S EY + + +D +
Sbjct: 127 NKFLVAWTPCMFGYSIVGDYVID----SPNEVYKTWASFYASTEYKKRIEAILYALDEV- 181
Query: 184 GDYERLREIFITGSKFELAFWEMAWR 209
E L IFI +FE+ FW+ + R
Sbjct: 182 SITEDLLNIFINSVRFEIGFWDASLR 207
>sp|P25052|TENA_BACSU TRANSCRIPTIONAL ACTIVATOR TENA >gi|73039|pir||XMBSTA transcription
activator of extracellular enzyme genes tenA - Bacillus
subtilis >gi|143729|gb|AAA22848.1| (M73546)
transcription activator [Bacillus subtilis]
>gi|2633519|emb|CAB13022.1| (Z99110) transcriptional
regulator [Bacillus subtilis]
Length = 236
Score = 94.8 bits (232), Expect = 8e-19
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 8/213 (3%)
Query: 3 TERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKA- 61
+E R A W F HPFV + G LP+++FK+YVLQD YL + + A+ A
Sbjct: 4 SEECRSAAAEWWEGSFVHPFVQGIGDGTLPIDRFKYYVLQDSYYLTHFAKVQSFGAAYAK 63
Query: 62 DYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYKG 121
D + A+ EM + E + L ++ E+ +P+ +Y M + G
Sbjct: 64 DLYTTGRMASHAQGTYEAEMALHREFAELLEISEEERKAFKPSPTAYSYTSHMYRSVLSG 123
Query: 122 RVVEGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREW----GRVYLSEEYLSLVSRLRE 177
E L ALLPC+W Y E+ E G+P IY++W G + ++ ++R E
Sbjct: 124 NFAEILAALLPCYWLYYEVGEKLLHCDPGHP--IYQKWIGTYGGDWFRQQVEEQINRFDE 181
Query: 178 IIDSLGGDYE-RLREIFITGSKFELAFWEMAWR 209
+ ++ + +++E F+ S +E FW MA+R
Sbjct: 182 LAENSTEEVRAKMKENFVISSYYEYQFWGMAYR 214
>emb|CAC12603.1| (AL445067) hypothetical protein [Thermoplasma acidophilum]
Length = 205
Score = 90.9 bits (222), Expect = 1e-17
Identities = 58/208 (27%), Positives = 97/208 (45%), Gaps = 9/208 (4%)
Query: 1 MITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASK 60
M+ E L+ W + H FV ++ G+LP+E FKFY++QD Y+ + RA+
Sbjct: 1 MLAENLKSLYLDEWNRYVGHEFVRRMEHGDLPLENFKFYLVQDSLYVEEMLRAVMRSTEL 60
Query: 61 ADYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYK 120
+ ++ M+ + L KELG+ + T+ +Y + ++
Sbjct: 61 MPNDMAIRILSSVVLGRDKGMETHAFLEKELGVEKSSRM----TMTTYSYTRHLRYSSTI 116
Query: 121 GRVVEGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIID 180
G + L A +PC W Y+EI + + +P YR W Y S+EY VS + E +D
Sbjct: 117 GWP-QFLAAWIPCMWGYSEIGK----TVLNSPNRYYRTWAEFYASKEYADRVSVILEAMD 171
Query: 181 SLGGDYERLREIFITGSKFELAFWEMAW 208
GD +++ F+ KFE FW+ A+
Sbjct: 172 RFNGDITEIKDYFLISLKFEQMFWQAAF 199
>pir||B71058 hypothetical protein PH1160 - Pyrococcus horikoshii
>gi|3257577|dbj|BAA30260.1| (AP000005) 211aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 211
Score = 90.5 bits (221), Expect = 1e-17
Identities = 58/217 (26%), Positives = 116/217 (52%), Gaps = 16/217 (7%)
Query: 1 MITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASK 60
M ++ L R++ IWRK H F++++ ++ EKF +++ D+ ++ R +A++ +K
Sbjct: 3 MFSDELLRNSSEIWRKFLPHRFLIEVAENSISREKFARWLVNDYYFVKNALRFMAILMAK 62
Query: 61 ADYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYK 120
A LL+ E + I+TE+ ++ ++LG+ L I AY++++L+ AY
Sbjct: 63 APDDLLSFFSE-SIYYISTELDMFKRNAEKLGIRLNGNIDWRA----KAYVNYLLNVAYS 117
Query: 121 GRVVEGLTALLPCFWSYAEIAEYHKDKL--DGNPVEIYREWGRVYLSEEYLSLVSRLREI 178
G +EG TA +Y E ++ +D++ D ++ W S+E+ V+++ I
Sbjct: 118 GSFLEGFTAYYCEEKAYYEAWKWVRDRVRSDNPYIDFINHWS----SQEFEKYVNKIEAI 173
Query: 179 IDSLG---GDY--ERLREIFITGSKFELAFWEMAWRG 210
++ L G++ E+ + +F S FEL FW++A+ G
Sbjct: 174 LNPLAEKHGEFEKEKAKIVFREVSNFELLFWDIAYGG 210
>pir||F81388 probable transcription regulator Cj0440c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6967914|emb|CAB74276.1|
(AL139075) putative transcriptional regulator
[Campylobacter jejuni]
Length = 222
Score = 86.2 bits (210), Expect = 3e-16
Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 9/217 (4%)
Query: 1 MITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASK 60
M+ L ++ IW H FV +L +L E F FY+ QD+ YL+ + A +A
Sbjct: 2 MLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQDYIYLLNYAKCYARLALN 61
Query: 61 ADYPL-LAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAY 119
++ L ++ + EM+ + +L LG+ ++ + +LVN AY +MLS
Sbjct: 62 SNTAKELRFAMKFQNYIVEGEMELHRAIL-SLGINADELDIKDESLVNIAYSRYMLSVGE 120
Query: 120 KGRVVEGLTALLPCFWSYAEIAEYHKDKLDGNPVE--IYREWGRVYLSEEYLSLVSRLRE 177
G ++ L AL C YA+I ++L ++ Y+EW Y SE + + +
Sbjct: 121 NGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYKEWILTYGSENFQNEAKEFED 180
Query: 178 IIDSLGGD-----YERLREIFITGSKFELAFWEMAWR 209
++S +++L EIF T ++ E+AFWE + R
Sbjct: 181 FVNSYTSSVGAQKFQKLSEIFHTVTRLEVAFWEHSLR 217
>pir||T40812 probable thiamin biosynthesis protein - fission yeast
(Schizosaccharomyces pombe) >gi|3810842|emb|CAA21803.1|
(AL032684) putative thiamine biosynthesis protein
[Schizosaccharomyces pombe]
Length = 551
Score = 82.7 bits (201), Expect = 3e-15
Identities = 59/199 (29%), Positives = 91/199 (45%), Gaps = 9/199 (4%)
Query: 14 WRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKADYPLLAELIELA 73
W++ H F L G LP+ F+ Y+ QD+ YLV RA ++ K + ++E A
Sbjct: 337 WKEYINHKFTNMLAKGTLPLPAFQDYLKQDYLYLVNFARAYSLKGYKEN--TFPNILEAA 394
Query: 74 RE--EITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYKGRVVEGLTALL 131
+ + E + + + G++L+D E + +AY ++L T V
Sbjct: 395 QSVIHVIEEKELHVSMCSSYGVSLQDLKSCEESPACTAYSRYILDTGAAQDVAALDFVQA 454
Query: 132 PCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSR----LREIIDSLGGD-Y 186
PC Y IA + NP Y++W Y E+YLS V R + EI+ L +
Sbjct: 455 PCLIGYYVIAARLMKEPFRNPQGPYQKWVDNYFCEDYLSAVRRGCRQIEEIVLKLSPERI 514
Query: 187 ERLREIFITGSKFELAFWE 205
+ L EIFI +KFE FWE
Sbjct: 515 QELIEIFIRATKFETLFWE 533
>gi|6324517 Thi20p [Saccharomyces cerevisiae] >gi|2133057|pir||S66740 probable
transcription factor YOL055c - yeast (Saccharomyces
cerevisiae) >gi|1419865|emb|CAA99063.1| (Z74797) ORF
YOL055c [Saccharomyces cerevisiae]
Length = 551
Score = 73.4 bits (177), Expect = 2e-12
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 15/205 (7%)
Query: 14 WRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKADYPLLAELIE-- 71
W H FV ++ G L +KF+F++ QD+ YLV R + SKA P L ++ +
Sbjct: 347 WDSYINHEFVKKVADGTLERKKFQFFIEQDYAYLVDYARVHCIAGSKA--PCLEDMEKEL 404
Query: 72 LAREEITTEMKNYEELLKEL-GLTLED---AIKTEPTLVNSAYMDFMLSTAYKGRVVEGL 127
+ + TEM +E+ LKE+ G+ D IK P L AY + + +G E +
Sbjct: 405 VIVGGVRTEMGQHEKRLKEVFGVKDPDYFQKIKRGPAL--RAYSRYFNDVSRRGNWQELV 462
Query: 128 TALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIIDSLGGDY- 186
+L PC Y E K K+ +Y EW Y S Y + ++++ + Y
Sbjct: 463 ASLTPCLMGYGEALTKMKGKVTAPEGSVYHEWCETYASSWYREAMDEGEKLLNHILETYP 522
Query: 187 ----ERLREIFITGSKFELAFWEMA 207
+ L I+ + E FW A
Sbjct: 523 PEQLDTLVTIYAEVCELETNFWTAA 547
>emb|CAA62531.1| (X91067) transcription factor [Saccharomyces cerevisiae]
Length = 543
Score = 70.2 bits (169), Expect = 2e-11
Identities = 50/175 (28%), Positives = 80/175 (45%), Gaps = 10/175 (5%)
Query: 14 WRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKADYPLLAELIE-- 71
W H FV ++ G L +KF+F++ QD+ YLV R + SKA P L ++ +
Sbjct: 347 WDSYINHEFVKKVADGTLERKKFQFFIEQDYAYLVDYARVHCIAGSKA--PCLEDMEKEL 404
Query: 72 LAREEITTEMKNYEELLKEL-GLTLED---AIKTEPTLVNSAYMDFMLSTAYKGRVVEGL 127
+ + TEM +E+ LKE+ G+ D IK P L AY + + +G E +
Sbjct: 405 VIVGGVRTEMGQHEKRLKEVFGVKDPDYFQKIKRGPAL--RAYSRYFNDVSRRGNWQELV 462
Query: 128 TALLPCFWSYAEIAEYHKDKLDGNPVEIYREWGRVYLSEEYLSLVSRLREIIDSL 182
+L PC Y E K K+ +Y EW Y S Y + ++++ +
Sbjct: 463 ASLTPCLMGYGEALTKMKGKVTAPEGSVYHEWCETYASSWYREAMDEGEKLLNHI 517
>gi|6325378 Thi22p [Saccharomyces cerevisiae] >gi|2132289|pir||S69014
hypothetical protein YPR121w - yeast (Saccharomyces
cerevisiae) >gi|1066472|gb|AAB68062.1| (U40828) Weak
similarity to hypothetical protein 3 (A. thaliana, PIR
accession number S23315) [Saccharomyces cerevisiae]
Length = 572
Score = 70.2 bits (169), Expect = 2e-11
Identities = 58/208 (27%), Positives = 90/208 (42%), Gaps = 21/208 (10%)
Query: 14 WRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASKADYPLLAEL---- 69
W H FV ++ G L +KF+F++ QD+ YL+ R V SK+ P L +L
Sbjct: 368 WDAYVNHEFVKRVADGTLERKKFQFFIEQDYLYLIDYVRVCCVTGSKS--PTLEDLEKDL 425
Query: 70 --IELAREEITTEMKNYEELLKELGLTLED---AIKTEPTLVNSAYMDFMLSTAYKGRVV 124
+ AR E+ ++ L +E G+ D IK P L AY +++ + +G
Sbjct: 426 VIADCARNELN---EHERRLREEFGVKDPDYLQKIKRGPAL--RAYCRYLIDISRRGNWQ 480
Query: 125 EGLTALLPCFWSYAEIAEYHKDKLDGNPVEIYREW----GRVYLSEEYLSLVSRLREIID 180
E + AL PC Y + KDK+ IY EW + + L + I++
Sbjct: 481 EIVVALNPCLMGYVYAVDKVKDKITAAEGSIYSEWCDTCASSFCYQAVLEGERLMNHILE 540
Query: 181 SLGGD-YERLREIFITGSKFELAFWEMA 207
+ D + L IF G + E FW A
Sbjct: 541 TYPPDQLDSLVTIFARGCELETNFWTAA 568
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.418
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79233300
Number of Sequences: 2977
Number of extensions: 3104333
Number of successful extensions: 10627
Number of sequences better than 1.0e-10: 18
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 10591
Number of HSP's gapped (non-prelim): 18
length of query: 214
length of database: 189,106,746
effective HSP length: 52
effective length of query: 162
effective length of database: 157,985,422
effective search space: 25593638364
effective search space used: 25593638364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 163 (67.9 bits)