BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1642 (PAB1642) DE:TRANSCRIPTIONAL REGULATOR
(224 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75087 transcription regulator PAB1642 - Pyrococcus abyssi ... 466 e-130
pir||B71058 hypothetical protein PH1160 - Pyrococcus horikoshii ... 351 3e-96
pir||H75087 hypothetical protein PAB1641 - Pyrococcus abyssi (st... 101 6e-21
pir||C71058 probable transcription regulator - Pyrococcus horiko... 94 2e-18
dbj|BAB06398.1| (AP001516) transcriptional regulator of extracel... 82 5e-15
gb|AAK42720.1| Transcriptional activator (tenA-2) [Sulfolobus so... 81 1e-14
gb|AAD51624.1| (AF169021) seed maturation protein PM36 [Glycine ... 80 3e-14
pir||C71837 probable transcription regulator - Helicobacter pylo... 76 3e-13
sp|P44659|Y358_HAEIN HYPOTHETICAL PROTEIN HI0358 >gi|1075360|pir... 76 3e-13
pir||G64680 transcription regulator - Helicobacter pylori (strai... 73 3e-12
pir||F81388 probable transcription regulator Cj0440c [imported] ... 70 2e-11
>pir||G75087 transcription regulator PAB1642 - Pyrococcus abyssi (strain Orsay)
>gi|5458516|emb|CAB50004.1| (AJ248286) TRANSCRIPTIONAL
REGULATOR [Pyrococcus abyssi]
Length = 224
Score = 466 bits (1186), Expect = e-130
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 1 MGMFSEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILM 60
MGMFSEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILM
Sbjct: 1 MGMFSEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILM 60
Query: 61 AKAPDNLLGFFAESIYYISQELTMFKENAEKLGVELEGEIDWRAKAYVNYLLNTAYAGSF 120
AKAPDNLLGFFAESIYYISQELTMFKENAEKLGVELEGEIDWRAKAYVNYLLNTAYAGSF
Sbjct: 61 AKAPDNLLGFFAESIYYISQELTMFKENAEKLGVELEGEIDWRAKAYVNYLLNTAYAGSF 120
Query: 121 LEGFTAFYCEERAYYEAWKWVKENLKEKSPYIDFINHWSSEDFRKYVERIEEILNSLAEM 180
LEGFTAFYCEERAYYEAWKWVKENLKEKSPYIDFINHWSSEDFRKYVERIEEILNSLAEM
Sbjct: 121 LEGFTAFYCEERAYYEAWKWVKENLKEKSPYIDFINHWSSEDFRKYVERIEEILNSLAEM 180
Query: 181 HGDFEKERAKKVFLEVSEFELLFWDIAYGGIEYGGDKTSKGEDI 224
HGDFEKERAKKVFLEVSEFELLFWDIAYGGIEYGGDKTSKGEDI
Sbjct: 181 HGDFEKERAKKVFLEVSEFELLFWDIAYGGIEYGGDKTSKGEDI 224
>pir||B71058 hypothetical protein PH1160 - Pyrococcus horikoshii
>gi|3257577|dbj|BAA30260.1| (AP000005) 211aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 211
Score = 351 bits (892), Expect = 3e-96
Identities = 163/210 (77%), Positives = 183/210 (86%)
Query: 1 MGMFSEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILM 60
M MFS+ELLR + IW+KFLPHRFL EVAE IS+E FARWLVNDYYFVKNALRFMAILM
Sbjct: 1 MVMFSDELLRNSSEIWRKFLPHRFLIEVAENSISREKFARWLVNDYYFVKNALRFMAILM 60
Query: 61 AKAPDNLLGFFAESIYYISQELTMFKENAEKLGVELEGEIDWRAKAYVNYLLNTAYAGSF 120
AKAPD+LL FF+ESIYYIS EL MFK NAEKLG+ L G IDWRAKAYVNYLLN AY+GSF
Sbjct: 61 AKAPDDLLSFFSESIYYISTELDMFKRNAEKLGIRLNGNIDWRAKAYVNYLLNVAYSGSF 120
Query: 121 LEGFTAFYCEERAYYEAWKWVKENLKEKSPYIDFINHWSSEDFRKYVERIEEILNSLAEM 180
LEGFTA+YCEE+AYYEAWKWV++ ++ +PYIDFINHWSS++F KYV +IE ILN LAE
Sbjct: 121 LEGFTAYYCEEKAYYEAWKWVRDRVRSDNPYIDFINHWSSQEFEKYVNKIEAILNPLAEK 180
Query: 181 HGDFEKERAKKVFLEVSEFELLFWDIAYGG 210
HG+FEKE+AK VF EVS FELLFWDIAYGG
Sbjct: 181 HGEFEKEKAKIVFREVSNFELLFWDIAYGG 210
>pir||H75087 hypothetical protein PAB1641 - Pyrococcus abyssi (strain Orsay)
>gi|5458517|emb|CAB50005.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 214
Score = 101 bits (250), Expect = 6e-21
Identities = 67/217 (30%), Positives = 120/217 (54%), Gaps = 16/217 (7%)
Query: 3 MFSEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILMAK 62
M +E L R+A IW+K H F+ ++ G + E F +++ D+ ++ R +A++ +K
Sbjct: 1 MITERLRRDADHIWRKIFEHPFVVQLYSGNLPMEKFKFYVLQDFNYLVGLTRALAVIASK 60
Query: 63 APDNLLGFFAE-SIYYISQELTMFKENAEKLGVELEGEIDWRA----KAYVNYLLNTAYA 117
A LL E + I+ E+ ++E ++LG+ LE I AY++++L+TAY
Sbjct: 61 ADYPLLAELIELAREEITTEMKNYEELLKELGLTLEDAIKTEPTLVNSAYMDFMLSTAYK 120
Query: 118 GSFLEGFTAFYCEERAYYEAWKWVKENLKEKSPYIDFINHWS----SEDFRKYVERIEEI 173
G +EG TA +Y E ++ K+ L + +P ++ W SE++ V R+ EI
Sbjct: 121 GRVVEGLTALLPCFWSYAEIAEYHKDKL-DGNP-VEIYREWGRVYLSEEYLSLVSRLREI 178
Query: 174 LNSLAEMHGDFEKERAKKVFLEVSEFELLFWDIAYGG 210
++SL GD+ ER +++F+ S+FEL FW++A+ G
Sbjct: 179 IDSLG---GDY--ERLREIFITGSKFELAFWEMAWRG 210
>pir||C71058 probable transcription regulator - Pyrococcus horikoshii
>gi|3257578|dbj|BAA30261.1| (AP000005) 218aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 218
Score = 93.6 bits (229), Expect = 2e-18
Identities = 62/218 (28%), Positives = 117/218 (53%), Gaps = 17/218 (7%)
Query: 3 MFSEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILMAK 62
M +++L R++ IWKK H F+ ++ G + E F +++ D+ ++ R +A++ +K
Sbjct: 4 MITDKLRRDSEQIWKKIFEHPFVVQLYSGTLPLEKFKFYVLQDFNYLVGLTRALAVISSK 63
Query: 63 APDNLLGFFAESIYYISQELTMFKENAEKLGVELEGEIDWRAK--------AYVNYLLNT 114
A L+ AE I E+T+ EN KL EL+ ++ K AY++++L T
Sbjct: 64 AEYPLM---AELIELARDEVTVEVENYVKLLKELDLTLEDAIKTEPTLVNSAYMDFMLAT 120
Query: 115 AYAGSFLEGFTAFYCEERAYYEAWKWVKENLKEK--SPYIDFINHWSSEDFRKYVERIEE 172
AY G+ +EG TA +Y E ++ K+ L++ Y ++ + S ++ V R+ +
Sbjct: 121 AYKGNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKIYREWGKVYLSNEYLNLVGRLRK 180
Query: 173 ILNSLAEMHGDFEKERAKKVFLEVSEFELLFWDIAYGG 210
I++S G +R +++F+ S+FEL FW++A+ G
Sbjct: 181 IIDS----SGHSGYDRLRRIFITGSKFELAFWEMAWRG 214
>dbj|BAB06398.1| (AP001516) transcriptional regulator of extracellular enzyme genes
[Bacillus halodurans]
Length = 224
Score = 82.3 bits (200), Expect = 5e-15
Identities = 57/213 (26%), Positives = 109/213 (50%), Gaps = 8/213 (3%)
Query: 4 FSEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILMAKA 63
F+ L +A+PIW+ H F++ + +G + K F ++ DY ++ + R A+ K
Sbjct: 3 FAASLYEKAQPIWEAGYNHPFVQGIGDGSLEKSKFQFFMKQDYLYLIDYARLFALGTLKG 62
Query: 64 PD-NLLGFFAESIY-YISQELTMFKENAEKLGV---ELEG-EIDWRAKAYVNYLLNTAYA 117
D + F++ ++ ++ E+ + + A++LG+ ELE E AY +Y+LN A
Sbjct: 63 NDLQTMSTFSKLLHATLNVEMDLHRAYAKRLGISAEELEAIEPAATTLAYTSYMLNVAQR 122
Query: 118 GSFLEGFTAFYCEERAYYEAWKWVK--ENLKEKSPYIDFINHWSSEDFRKYVERIEEILN 175
GS L+ A +YYE +K + Y ++I ++S++F++ + + ++L+
Sbjct: 123 GSLLDLIAAVLPCTWSYYEIGVKLKGIPGASDHPFYGEWIKLYASDEFKELADWLIQMLD 182
Query: 176 SLAEMHGDFEKERAKKVFLEVSEFELLFWDIAY 208
A+ EK + + +FL S E FWD+AY
Sbjct: 183 EEAKGLSSKEKAKLETIFLTTSRLENEFWDMAY 215
>gb|AAK42720.1| Transcriptional activator (tenA-2) [Sulfolobus solfataricus]
Length = 224
Score = 81.1 bits (197), Expect = 1e-14
Identities = 64/210 (30%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 5 SEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILMAKAP 64
SE+L I+ L H F+ E+ EG +S++ F +++ DY +++ + +A+L AKA
Sbjct: 5 SEKLWNFISDIYSSILRHPFILELVEGILSRDKFKYYIIQDYLYLREFSKALALLAAKAE 64
Query: 65 D--NLLGFFAESIYYISQELTMFKENAEKLGVELEG-EIDWRAKAYVNYLLNTAYAGSFL 121
D L F I E + K ++ +++E E+ AY +YLL AY+ F
Sbjct: 65 DEEQTLLFTTHIQDAIKVEKALHKFYIKEFNLDIEDYEMSPTNLAYTSYLLAVAYSRPFN 124
Query: 122 EGFTAFYCEERAYYEAWKWVKENLKEKSP---YIDFINHWSSEDFRKYVERIEEILNSLA 178
E +A Y+ K KE LK+ S Y +I + E++ K V + +I+NSL
Sbjct: 125 EVISAVL---PCYWIYMKVGKELLKQGSKDKYYQKWIETYGGEEYEKGVRAVLDIVNSLK 181
Query: 179 EMHGDFEKERAKKVFLEVSEFELLFWDIAY 208
+F K K F S +E +FWD AY
Sbjct: 182 VSEEEFNK--MKIHFRTASIYEYMFWDSAY 209
>gb|AAD51624.1| (AF169021) seed maturation protein PM36 [Glycine max]
Length = 229
Score = 79.6 bits (193), Expect = 3e-14
Identities = 55/219 (25%), Positives = 101/219 (46%), Gaps = 16/219 (7%)
Query: 5 SEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILMAKA- 63
+E L++ R ++ H + + +G I+ +F WL DY FV+ + F+A ++ KA
Sbjct: 15 TETWLKKHRLLYNGATRHPLIISIRDGTINTASFKTWLAQDYLFVRAFVPFVASVLIKAW 74
Query: 64 --------PDNLLGFFAESIYYISQELTMFKENAEKLGVELEGEIDWRAKAYVNYLLNTA 115
+ +LG A + E++ FK A K G+ L + +A LL +
Sbjct: 75 KESDCSGDMEVILGGMAS----LEDEISWFKTEANKWGISLSDVVPQQANKNYCGLLESL 130
Query: 116 YA--GSFLEGFTAFYCEERAYYEAWKW-VKENLKEKSPYIDFINHWSSEDFRKYVERIEE 172
+ + TAF+ E Y E++ ++E K + W +E F KY + ++
Sbjct: 131 MSPDAEYTVAITAFWAIETVYQESFAHCIEEGSKTPPELKETCVRWGNEAFGKYCQSLQN 190
Query: 173 ILNSLAEMHGDFEKERAKKVFLEVSEFELLFWDIAYGGI 211
I N + D E ++A+ + L V E E+ FW+++ G +
Sbjct: 191 IANRCLQKASDEELKKAEVMLLSVLEHEVEFWNMSRGNV 229
>pir||C71837 probable transcription regulator - Helicobacter pylori (strain
J99) >gi|4155800|gb|AAD06775.1| (AE001546) putative
TRANSCRIPTIONAL REGULATOR [Helicobacter pylori J99]
Length = 217
Score = 76.5 bits (185), Expect = 3e-13
Identities = 57/212 (26%), Positives = 107/212 (49%), Gaps = 8/212 (3%)
Query: 5 SEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILMAKAP 64
S+ L + A+ IW + H F++ + G + ++ F +++ DY F+ + A+ + KA
Sbjct: 4 SQYLYQNAQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKAC 63
Query: 65 DN-LLGFFAESIYYI-SQELTMFKENAEKLGV---ELEGEIDWRA-KAYVNYLLNTAYAG 118
D ++ F+ +I I + E+++ +L + EL+ A K+Y +Y+L + G
Sbjct: 64 DEAVMREFSNAIQDILNNEMSIHNHYIRELQITQKELQNACPTLANKSYTSYMLAEGFKG 123
Query: 119 SFLEGFTAFYCEERAYYEAWKWVKE--NLKEKSPYIDFINHWSSEDFRKYVERIEEILNS 176
S E A +Y + + + N E + Y +I +SS++F+ V +L+S
Sbjct: 124 SIKEVAVAVLACGWSYLVIAQNLSQIPNALEDAFYGHWIKGYSSKEFQACVTWNINLLDS 183
Query: 177 LAEMHGDFEKERAKKVFLEVSEFELLFWDIAY 208
LA E E+ K++F+ SE+E FWD+AY
Sbjct: 184 LALASSKQEIEKLKEIFIATSEYEYQFWDMAY 215
>sp|P44659|Y358_HAEIN HYPOTHETICAL PROTEIN HI0358 >gi|1075360|pir||D64063 transcription
activator homolog HI0358 - Haemophilus influenzae
(strain Rd KW20) >gi|1573326|gb|AAC22017.1| (U32720)
transcriptional activator, putative [Haemophilus
influenzae Rd]
Length = 215
Score = 76.1 bits (184), Expect = 3e-13
Identities = 49/214 (22%), Positives = 106/214 (48%), Gaps = 19/214 (8%)
Query: 6 EELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILMAKAPD 65
E+L+++A+P W++++ H F++++A+G + K F +L DY ++ + R A+ + KA +
Sbjct: 3 EQLIQQAQPYWQQYIEHEFVQQLAKGTLPKACFQHYLKQDYLYLFHYSRAFALGVFKAKN 62
Query: 66 NLLGFFAE------SIYYISQELTMFKENAEKLGVELEGEIDWRAK-----AYVNYLLNT 114
FAE ++ + QE+ + + G+ E EI + AY YLL+
Sbjct: 63 -----FAEMETPRKTLEILCQEIQLHLNYCREWGIS-EQEIFTTQESAACIAYTRYLLDC 116
Query: 115 AYAGSFLEGFTAFYCEERAYYEAWKWVKENLKE--KSPYIDFINHWSSEDFRKYVERIEE 172
GS E + A Y + +++ ++ +PY +I+ ++SE+F++ + +
Sbjct: 117 GMTGSLAELYAAVTPCALGYAQVARYITQHYPRLPNNPYQTWIDTYASEEFQQAAQETVD 176
Query: 173 ILNSLAEMHGDFEKERAKKVFLEVSEFELLFWDI 206
L +L + + +++F + E+ FW +
Sbjct: 177 FLTALCKPLNPSQLAEIQQIFTTATRMEIAFWQM 210
>pir||G64680 transcription regulator - Helicobacter pylori (strain 26695)
>gi|2314455|gb|AAD08332.1| (AE000633) transcriptional
regulator (tenA) [Helicobacter pylori 26695]
Length = 217
Score = 73.0 bits (176), Expect = 3e-12
Identities = 56/212 (26%), Positives = 104/212 (48%), Gaps = 8/212 (3%)
Query: 5 SEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILMAKAP 64
S+ L + + IW + H F++ + G + ++ F +++ DY F+ + A+ + KA
Sbjct: 4 SQYLYQNVQSIWGDCISHPFVQGIGRGTLERDKFRFYIIQDYLFLLEYAKVFALGVVKAC 63
Query: 65 DN-LLGFFAESIYYI-SQELTMFKENAEKLGV---ELEGEIDWRA-KAYVNYLLNTAYAG 118
D ++ F+ +I I + E+++ L + EL+ A K+Y +Y+L + G
Sbjct: 64 DEAVMREFSNAIQDILNNEMSIHNHYIRGLQITQKELQNARPTLANKSYTSYMLAEGFKG 123
Query: 119 SFLEGFTAFYCEERAYYEAWKWVKE--NLKEKSPYIDFINHWSSEDFRKYVERIEEILNS 176
S E A +Y + + + N E + Y +I +SS++F+ V +L+S
Sbjct: 124 SIKEVAAAVLSCGWSYLVIAQNLSQIPNALEHAFYGHWIKGYSSKEFQACVNWNINLLDS 183
Query: 177 LAEMHGDFEKERAKKVFLEVSEFELLFWDIAY 208
L E E+ K +F+ SE+E LFWD+AY
Sbjct: 184 LTLTSSKQEIEKLKDIFITTSEYEYLFWDMAY 215
>pir||F81388 probable transcription regulator Cj0440c [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6967914|emb|CAB74276.1|
(AL139075) putative transcriptional regulator
[Campylobacter jejuni]
Length = 222
Score = 70.2 bits (169), Expect = 2e-11
Identities = 53/216 (24%), Positives = 100/216 (45%), Gaps = 17/216 (7%)
Query: 3 MFSEELLREARPIWKKFLPHRFLKEVAEGKISKEAFARWLVNDYYFVKNALRFMAILMAK 62
M L++E + IW +L H F+K++ + + +E F +L DY ++ N + A L
Sbjct: 2 MLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQDYIYLLNYAKCYARLALN 61
Query: 63 APDNLLGFFAESI--YYISQELTMFKE------NAEKLGVELEGEIDWRAKAYVNYLLNT 114
+ FA Y + E+ + + NA++L ++ E ++ AY Y+L+
Sbjct: 62 SNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIKDESLVN---IAYSRYMLSV 118
Query: 115 AYAGSFLEGFTAFYCEERAYYEAWKWV-----KENLKEKSPYIDFINHWSSEDFRKYVER 169
G FL+ A Y + + ENLK+ PY ++I + SE+F+ +
Sbjct: 119 GENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKD-HPYKEWILTYGSENFQNEAKE 177
Query: 170 IEEILNSLAEMHGDFEKERAKKVFLEVSEFELLFWD 205
E+ +NS G + ++ ++F V+ E+ FW+
Sbjct: 178 FEDFVNSYTSSVGAQKFQKLSEIFHTVTRLEVAFWE 213
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.138 0.420
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86972375
Number of Sequences: 2977
Number of extensions: 3562838
Number of successful extensions: 10120
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 10104
Number of HSP's gapped (non-prelim): 11
length of query: 224
length of database: 189,106,746
effective HSP length: 52
effective length of query: 172
effective length of database: 157,985,422
effective search space: 27173492584
effective search space used: 27173492584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 163 (67.9 bits)