BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1649 (PAB1649) DE:Hypothetical protein
         (115 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75086 hypothetical protein PAB1649 - Pyrococcus abyssi (st...   229  6e-60
pir||A75064 hypothetical protein PAB1373 - Pyrococcus abyssi (st...    96  1e-19
pir||A71059 hypothetical protein PH1167 - Pyrococcus horikoshii ...    89  2e-17

>pir||H75086 hypothetical protein PAB1649 - Pyrococcus abyssi (strain Orsay)
           >gi|5458509|emb|CAB49997.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 115
           
 Score =  229 bits (579), Expect = 6e-60
 Identities = 115/115 (100%), Positives = 115/115 (100%)

Query: 1   MSFKDKGKNLSSVFGVRNLPSCLEAKDIGMEVLDNSKAVISVALKIKEPGECSMNDAYLD 60
           MSFKDKGKNLSSVFGVRNLPSCLEAKDIGMEVLDNSKAVISVALKIKEPGECSMNDAYLD
Sbjct: 1   MSFKDKGKNLSSVFGVRNLPSCLEAKDIGMEVLDNSKAVISVALKIKEPGECSMNDAYLD 60

Query: 61  ILLENSSNRVPLGNVTFEILTPGDRRLKIPSYVEASIGLEAVIPKMMYTIFQPVQ 115
           ILLENSSNRVPLGNVTFEILTPGDRRLKIPSYVEASIGLEAVIPKMMYTIFQPVQ
Sbjct: 61  ILLENSSNRVPLGNVTFEILTPGDRRLKIPSYVEASIGLEAVIPKMMYTIFQPVQ 115


>pir||A75064 hypothetical protein PAB1373 - Pyrococcus abyssi (strain Orsay)
           >gi|5458919|emb|CAB50406.1| (AJ248287) hypothetical
           protein [Pyrococcus abyssi]
           Length = 270
           
 Score = 96.0 bits (235), Expect = 1e-19
 Identities = 49/110 (44%), Positives = 72/110 (64%), Gaps = 5/110 (4%)

Query: 9   NLSSVFGVRNLPSCLEAKDIGMEVLDNSKAV----ISVALKIKEPGECSMNDAYLDILLE 64
           N S   G+RNLP CLE+K I ++V   +  V    I+V L++K+ G C M++AYL++   
Sbjct: 70  NFSGAIGIRNLPPCLESKGIDLDVYCTNSRVKIETITVTLRLKKIGRCIMDNAYLEVWQG 129

Query: 65  NSSNRVPLGNVTFEILTPGDRR-LKIPSYVEASIGLEAVIPKMMYTIFQP 113
           NS  +VPLG++ FEI+ P + R LKI S++ A IG E  +P++MYTI  P
Sbjct: 130 NSLKKVPLGSIEFEIIKPAEERGLKILSHIGALIGPEPSVPRLMYTILNP 179


>pir||A71059 hypothetical protein PH1167 - Pyrococcus horikoshii
           >gi|3257584|dbj|BAA30267.1| (AP000005) 257aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 257
           
 Score = 88.9 bits (217), Expect = 2e-17
 Identities = 44/105 (41%), Positives = 65/105 (61%), Gaps = 4/105 (3%)

Query: 15  GVRNLPSCLEAKDIGMEVLDNSKAV---ISVALKIKEPGECSMNDAYLDILLENSSNRVP 71
           GVRNLP CL+ KD+G+       A    I V L++KEPG C MN  Y+ I   N + ++P
Sbjct: 73  GVRNLPPCLDFKDVGVSKYSYPGATVFDIIVTLRLKEPGHCIMNKTYVVIWRNNITKKIP 132

Query: 72  LGNVTFEILTPGDRR-LKIPSYVEASIGLEAVIPKMMYTIFQPVQ 115
           +G + F IL   + + L IP+YVEA +G  +++P++MYTI  P +
Sbjct: 133 MGIIEFNILEASEEKTLTIPAYVEAFVGSNSLVPRLMYTISNPFE 177


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.136    0.378 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39833400
Number of Sequences: 2977
Number of extensions: 1404392
Number of successful extensions: 2783
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2778
Number of HSP's gapped (non-prelim): 3
length of query: 115
length of database: 189,106,746
effective HSP length: 55
effective length of query: 60
effective length of database: 156,189,961
effective search space: 9371397660
effective search space used: 9371397660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 159 (66.3 bits)