BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1651 (PAB1651) DE:Hypothetical protein
         (183 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75086 hypothetical protein PAB1651 - Pyrococcus abyssi (st...   376  e-103
pir||D71054 hypothetical protein PH1130 - Pyrococcus horikoshii ...   247  7e-65

>pir||F75086 hypothetical protein PAB1651 - Pyrococcus abyssi (strain Orsay)
           >gi|5458507|emb|CAB49995.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 183
           
 Score =  376 bits (954), Expect = e-103
 Identities = 183/183 (100%), Positives = 183/183 (100%)

Query: 1   MKKVAFILIIVLLAFSLGCLSSTSTPTTTQTSQPSPTTPSKTQAQDWLEGLDKSKFHFYV 60
           MKKVAFILIIVLLAFSLGCLSSTSTPTTTQTSQPSPTTPSKTQAQDWLEGLDKSKFHFYV
Sbjct: 1   MKKVAFILIIVLLAFSLGCLSSTSTPTTTQTSQPSPTTPSKTQAQDWLEGLDKSKFHFYV 60

Query: 61  FGVNTCPHCRRMKELLPEYFGNKSLTFYEVRENKTAYEFYLKFMETLGVTGVPLIGIFYE 120
           FGVNTCPHCRRMKELLPEYFGNKSLTFYEVRENKTAYEFYLKFMETLGVTGVPLIGIFYE
Sbjct: 61  FGVNTCPHCRRMKELLPEYFGNKSLTFYEVRENKTAYEFYLKFMETLGVTGVPLIGIFYE 120

Query: 121 NKLYAVVEGEIDPRDIPKLVKAAMKENGVALIISRGQFLIPRNETKGIEAISNLTSWFKL 180
           NKLYAVVEGEIDPRDIPKLVKAAMKENGVALIISRGQFLIPRNETKGIEAISNLTSWFKL
Sbjct: 121 NKLYAVVEGEIDPRDIPKLVKAAMKENGVALIISRGQFLIPRNETKGIEAISNLTSWFKL 180

Query: 181 GEH 183
           GEH
Sbjct: 181 GEH 183


>pir||D71054 hypothetical protein PH1130 - Pyrococcus horikoshii
           >gi|3257547|dbj|BAA30230.1| (AP000005) 170aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 170
           
 Score =  247 bits (624), Expect = 7e-65
 Identities = 118/182 (64%), Positives = 146/182 (79%), Gaps = 14/182 (7%)

Query: 2   KKVAFILIIVLLAFSLGCLSSTSTPTTTQTSQPSPTTPSKTQAQDWLEGLDKSKFHFYVF 61
           + +A +LI+VL A  LGC+SS    T TQTSQ           + WLEGL KS+FHFY+F
Sbjct: 3   RDLALLLILVLAASFLGCISSQ---TQTQTSQ-----------EKWLEGLKKSEFHFYIF 48

Query: 62  GVNTCPHCRRMKELLPEYFGNKSLTFYEVRENKTAYEFYLKFMETLGVTGVPLIGIFYEN 121
           G+NTCPHC+RMK+LLPEYFGN SLTFYE+RE+K AY  Y+KF++TLG+TGVPLIGIFY++
Sbjct: 49  GLNTCPHCQRMKKLLPEYFGNSSLTFYEIREDKKAYNTYMKFVKTLGITGVPLIGIFYKD 108

Query: 122 KLYAVVEGEIDPRDIPKLVKAAMKENGVALIISRGQFLIPRNETKGIEAISNLTSWFKLG 181
            LYAVVEGEIDP+ IP+LVK AMK NGV LIIS+GQFL+P+NE+KG+E I N+T+WFKL 
Sbjct: 109 NLYAVVEGEIDPKVIPQLVKEAMKNNGVILIISQGQFLVPKNESKGLELIGNMTTWFKLN 168

Query: 182 EH 183
            H
Sbjct: 169 GH 170


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.137    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67793634
Number of Sequences: 2977
Number of extensions: 2792789
Number of successful extensions: 16037
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16034
Number of HSP's gapped (non-prelim): 2
length of query: 183
length of database: 189,106,746
effective HSP length: 53
effective length of query: 130
effective length of database: 157,386,935
effective search space: 20460301550
effective search space used: 20460301550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)