BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1657 (aepA) DE:EXOENZYMES REGULATORY PROTEIN AEPA PRECURSOR
(476 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75085 exoenzymes regulatory protein aepa precursor PAB1657... 946 0.0
pir||E71055 hypothetical protein PH1139 - Pyrococcus horikoshii ... 782 0.0
pir||F69989 conserved hypothetical protein ytcJ - Bacillus subti... 198 9e-50
pir||D72523 hypothetical protein APE2161 - Aeropyrum pernix (str... 188 1e-46
dbj|BAB06919.1| (AP001518) unknown conserved protein [Bacillus h... 185 7e-46
gb|AAG20078.1| (AE005087) Vng1880c [Halobacterium sp. NRC-1] 181 1e-44
pir||D72390 conserved hypothetical protein - Thermotoga maritima... 151 2e-35
pir||D75261 conserved hypothetical protein - Deinococcus radiodu... 139 8e-32
pir||C70945 hypothetical protein Rv2052c - Mycobacterium tubercu... 136 5e-31
pir||G83339 hypothetical protein PA2448 [imported] - Pseudomonas... 134 2e-30
emb|CAB61667.1| (AL133213) hypothetical protein SC6D7.15. [Strep... 134 2e-30
pir||T49197 hypothetical protein F27K19.30 - Arabidopsis thalian... 128 2e-28
pir||H70422 hypothetical protein aq_1412 - Aquifex aeolicus >gi|... 120 3e-26
emb|CAC11800.1| (AL445065) conserved hypothetical protein [Therm... 116 5e-25
pir||T49745 hypothetical protein B24B19.170 [imported] - Neurosp... 111 1e-23
gb|AAF39741.1|AC005935_8 (AC005935) L7234.12 [Leishmania major] ... 104 2e-21
pir||C70548 probable regulatory protein - Mycobacterium tubercul... 90 6e-17
sp|Q06555|AEPA_ERWCA EXOENZYMES REGULATORY PROTEIN AEPA PRECURSO... 83 8e-15
pir||G83307 hypothetical protein PA2699 [imported] - Pseudomonas... 83 8e-15
>pir||F75085 exoenzymes regulatory protein aepa precursor PAB1657 - Pyrococcus
abyssi (strain Orsay) >gi|5458499|emb|CAB49987.1|
(AJ248286) EXOENZYMES REGULATORY PROTEIN AEPA PRECURSOR
[Pyrococcus abyssi]
Length = 476
Score = 946 bits (2419), Expect = 0.0
Identities = 476/476 (100%), Positives = 476/476 (100%)
Query: 1 MKALINGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPA 60
MKALINGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPA
Sbjct: 1 MKALINGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPA 60
Query: 61 FFDSHLHLDELGMSLEMVDLRGTKSMKELLERLKGGKGRIIFGFGWDQDELGEYPTKEVL 120
FFDSHLHLDELGMSLEMVDLRGTKSMKELLERLKGGKGRIIFGFGWDQDELGEYPTKEVL
Sbjct: 61 FFDSHLHLDELGMSLEMVDLRGTKSMKELLERLKGGKGRIIFGFGWDQDELGEYPTKEVL 120
Query: 121 NEIDKPVFIYRKCFHVAVANDAMLELLNLEPSKDFEEDTGMIKEKALEEARKIINEKILS 180
NEIDKPVFIYRKCFHVAVANDAMLELLNLEPSKDFEEDTGMIKEKALEEARKIINEKILS
Sbjct: 121 NEIDKPVFIYRKCFHVAVANDAMLELLNLEPSKDFEEDTGMIKEKALEEARKIINEKILS 180
Query: 181 LEDYIHYIERAQEHLINLGVKSVAFMSVNEKAFKALFYLEREGKLKVNVSAYINPSILDK 240
LEDYIHYIERAQEHLINLGVKSVAFMSVNEKAFKALFYLEREGKLKVNVSAYINPSILDK
Sbjct: 181 LEDYIHYIERAQEHLINLGVKSVAFMSVNEKAFKALFYLEREGKLKVNVSAYINPSILDK 240
Query: 241 LEDLNLRRFNGERLSITGVKLFTDGSFGARTALLSEPYSDDPSTSGEMVSDEEELANIME 300
LEDLNLRRFNGERLSITGVKLFTDGSFGARTALLSEPYSDDPSTSGEMVSDEEELANIME
Sbjct: 241 LEDLNLRRFNGERLSITGVKLFTDGSFGARTALLSEPYSDDPSTSGEMVSDEEELANIME 300
Query: 301 RAKRLKLDVAVHAIGDRGLDIALNAFEKAKLSGRVEHASLVRDDQLERIRELGIRLSVQP 360
RAKRLKLDVAVHAIGDRGLDIALNAFEKAKLSGRVEHASLVRDDQLERIRELGIRLSVQP
Sbjct: 301 RAKRLKLDVAVHAIGDRGLDIALNAFEKAKLSGRVEHASLVRDDQLERIRELGIRLSVQP 360
Query: 361 HFIISDWWVVERVGEKRARWVYRFKDLLRVAEVGFSTDAPIEPADPWLTVEAAVNRGKGV 420
HFIISDWWVVERVGEKRARWVYRFKDLLRVAEVGFSTDAPIEPADPWLTVEAAVNRGKGV
Sbjct: 361 HFIISDWWVVERVGEKRARWVYRFKDLLRVAEVGFSTDAPIEPADPWLTVEAAVNRGKGV 420
Query: 421 VKLYEFTKDQALTVEEALHCYTYGSARVSLANDIGKLEPGFKAEYIVMDRDPLVMK 476
VKLYEFTKDQALTVEEALHCYTYGSARVSLANDIGKLEPGFKAEYIVMDRDPLVMK
Sbjct: 421 VKLYEFTKDQALTVEEALHCYTYGSARVSLANDIGKLEPGFKAEYIVMDRDPLVMK 476
>pir||E71055 hypothetical protein PH1139 - Pyrococcus horikoshii
>gi|3257556|dbj|BAA30239.1| (AP000005) 494aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 494
Score = 782 bits (1998), Expect = 0.0
Identities = 370/476 (77%), Positives = 433/476 (90%)
Query: 1 MKALINGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPA 60
MKALING IYTSF PL+KVSGLVIS+ +V+YAGDS VAK+IVELSGGE++DLKGKYVMPA
Sbjct: 19 MKALINGTIYTSFNPLKKVSGLVISHGKVIYAGDSEVAKKIVELSGGEIVDLKGKYVMPA 78
Query: 61 FFDSHLHLDELGMSLEMVDLRGTKSMKELLERLKGGKGRIIFGFGWDQDELGEYPTKEVL 120
FFDSHLHLDELGMSLEMVDLRG KS++EL++RLK GKGRIIFGFGWDQDELGE+PT++ L
Sbjct: 79 FFDSHLHLDELGMSLEMVDLRGAKSIEELIQRLKRGKGRIIFGFGWDQDELGEWPTRKEL 138
Query: 121 NEIDKPVFIYRKCFHVAVANDAMLELLNLEPSKDFEEDTGMIKEKALEEARKIINEKILS 180
N IDKPVFIYRKCFHVAVAND MLELLNL PSKDF+EDTG+IKEK+LEEARK+INE++L+
Sbjct: 139 NAIDKPVFIYRKCFHVAVANDKMLELLNLTPSKDFDEDTGIIKEKSLEEARKVINERVLT 198
Query: 181 LEDYIHYIERAQEHLINLGVKSVAFMSVNEKAFKALFYLEREGKLKVNVSAYINPSILDK 240
+EDY++YI+RAQEHL++LGVKSV+FMSVNEKA +ALFYLEREGKL +NV AY+ P +LDK
Sbjct: 199 VEDYVYYIKRAQEHLLDLGVKSVSFMSVNEKALRALFYLEREGKLSINVFAYVTPEVLDK 258
Query: 241 LEDLNLRRFNGERLSITGVKLFTDGSFGARTALLSEPYSDDPSTSGEMVSDEEELANIME 300
LE + L RF G RL+I GVKLFTDGS GARTALLS+PYSDDPSTSG++V + EEL I E
Sbjct: 259 LESIGLGRFQGNRLTIAGVKLFTDGSLGARTALLSKPYSDDPSTSGQLVMEREELIRITE 318
Query: 301 RAKRLKLDVAVHAIGDRGLDIALNAFEKAKLSGRVEHASLVRDDQLERIRELGIRLSVQP 360
+A+ L LDVA+HAIGD+ LD+AL+ FE GR+EHASLVRDDQLER++ L +RLSVQP
Sbjct: 319 KARSLGLDVAIHAIGDKALDVALDVFETTGFPGRIEHASLVRDDQLERVKNLKVRLSVQP 378
Query: 361 HFIISDWWVVERVGEKRARWVYRFKDLLRVAEVGFSTDAPIEPADPWLTVEAAVNRGKGV 420
HFIISDWW+VERVGE+R +WVYRFKDL++VAE+GFSTD+PIEPADPWLTV+AAVNRGKG
Sbjct: 379 HFIISDWWIVERVGEERVKWVYRFKDLMKVAELGFSTDSPIEPADPWLTVDAAVNRGKGK 438
Query: 421 VKLYEFTKDQALTVEEALHCYTYGSARVSLANDIGKLEPGFKAEYIVMDRDPLVMK 476
VKLYE TKDQAL +++ALH YTYGSARVSLA+DIGKLEPGFKAEYI++DRDPLV+K
Sbjct: 439 VKLYELTKDQALDIKDALHSYTYGSARVSLASDIGKLEPGFKAEYIILDRDPLVVK 494
>pir||F69989 conserved hypothetical protein ytcJ - Bacillus subtilis
>gi|2293233|gb|AAC00311.1| (AF008220) YtcJ [Bacillus
subtilis] >gi|2635439|emb|CAB14933.1| (Z99119) similar
to hypothetical proteins [Bacillus subtilis]
Length = 529
Score = 198 bits (499), Expect = 9e-50
Identities = 155/519 (29%), Positives = 244/519 (46%), Gaps = 58/519 (11%)
Query: 1 MKALINGN-IYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMP 59
MKA+ +G IYT + + + + + G K E I L G + P
Sbjct: 1 MKAIWHGGFIYTMLEEGDRTEAVYVEDGVIKGTGSYERLKEKYGSPETEEISLNGAVMFP 60
Query: 60 AFFDSHLHLDELGMSLEMVDLRGTKSMKELLERLKGGKGRI-----IFGFGWDQD--ELG 112
F DSHLHL G +DL S +L+ K + ++ + G GW+++ E
Sbjct: 61 GFVDSHLHLIGHGEKQLQLDLSALTSKDSILQAAKERERQLPKNDWLIGEGWNENQFETP 120
Query: 113 EYPTKEVLNEI--DKPVFIYRKCFHVAVANDAMLELLNLEPSKDFEEDTGMIKEKALEEA 170
+Y TK L+ + D+PV + R C H N A L+ + + + D G+I + A E
Sbjct: 121 DYLTKHDLDRLFPDRPVLLKRICRHAIAVNSAALQAAGISRNTP-DPDGGVIVKDANGEP 179
Query: 171 RKIINEKILSLEDYI---------HYIERA-----------------QEHLINLGVKSVA 204
++ +K +D I HY++ A E L G SV
Sbjct: 180 TGLLFDKA---QDLILKAVPPVSQHYVDEALTAAIKDCWTKGLTGGHSEDLSYYGDVSVP 236
Query: 205 FMSVNEKAFKALFYLEREGKLKVNVSAYINPSILDKLEDLNLRRFNGERLSITGVKLFTD 264
M EKA GK ++ +D+ E L + +G + +K+F D
Sbjct: 237 -MKAYEKAAAG-------GKYPFRCHLLVHHEAVDRWEQLE--KLSGPYVEFGAMKIFAD 286
Query: 265 GSFGARTALLSEPYSDDPSTSGEMVSDEEELANIMERAKRLKLDVAVHAIGDRGLDIALN 324
G+ G RTALL EPY DDPST+G V D+E L ++ +A+ ++VAVHAIGD + LN
Sbjct: 287 GALGGRTALLKEPYQDDPSTNGVQVHDDETLGRLIRKAREKGMEVAVHAIGDLAFEKVLN 346
Query: 325 AFEKAKLSG----RVEHASLVRDDQLERIRELGIRLSVQPHFIISDW-WVVERVGEKRAR 379
A EK R+ HA ++ ++ +ER + I L +QPHF+ SD+ WV++R+G+ R +
Sbjct: 347 AIEKHPPKNGRHDRLIHAQVLDNELIERAARMPIALDLQPHFVASDFPWVIDRLGKDRMK 406
Query: 380 WVYRFKDLLRVAEV-GFSTDAPIEPADPWLTVEAAVNRGKGVVKL-YEFTKDQALTVEEA 437
+ +K L+ + +DAPIEP DP L +++AV R + + + + L V EA
Sbjct: 407 TAFAWKTLISKGILCAGGSDAPIEPVDPLLGIQSAVLRKSSHEQNGPSYNESECLPVYEA 466
Query: 438 LHCYTYGSARVSL-ANDIGKLEPGFKAEYIVMDRDPLVM 475
+ YT GSA + GK+ G+ A++ V+ DP +
Sbjct: 467 IKLYTEGSAGIIYKEKSRGKIAEGYDADFTVLSGDPFAI 505
>pir||D72523 hypothetical protein APE2161 - Aeropyrum pernix (strain K1)
>gi|5105860|dbj|BAA81172.1| (AP000063) 489aa long
hypothetical protein [Aeropyrum pernix]
Length = 489
Score = 188 bits (472), Expect = 1e-46
Identities = 145/455 (31%), Positives = 221/455 (47%), Gaps = 34/455 (7%)
Query: 36 SVAKRIVELSGGEVIDLKGKYVMPAFFDSHLHLDELGMSLEMVDLRGTKSMKELLERLKG 95
S+++ +S G+ + +KG +++P D+HLH+ LG S +V+L+G S +E+ +RL
Sbjct: 33 SISRGEPHVSVGKRVAVKG-FLLPPLVDAHLHMRSLGASFRIVNLKGASSPEEVAKRLAA 91
Query: 96 GKGRIIFGFGWDQDEL--GEYPTKEVLNEI--DKPVFIYRKCFHVAVANDAMLELLNLEP 151
I G GW+++E G + +L+ +KP R C HVAVAN A + ++
Sbjct: 92 ANSPIAVGRGWNEEEFRPGSRLDRRILDSYLGEKPALAVRICGHVAVANSAFIRESGVDK 151
Query: 152 --SKDFEEDTGMIKEKALEEARKIINEKILSLEDYIHYIERAQEHLINLGVKSVAFMSVN 209
+ + G++ E A+ A + + + E + A L ++GV V+ M+ +
Sbjct: 152 LFPNLVDRERGLLLEDAVSYAVSVAMKTYNNEE----LLRDAASALASVGVFGVSSMACS 207
Query: 210 EKAFKALFYLEREGKLKVNVSAYINPSILDKLEDLNLRRFNGERLSITGVKLFTDGSFGA 269
E+ +AL + L+V V+ Y+ + + G R SI GVKLF DGS G
Sbjct: 208 EEEVRALSLIG--DALEVRVACYLRRGVEPPPKRA------GARWSIVGVKLFADGSLGG 259
Query: 270 RTALLSEPY--SDDPSTSGEMVSDEEELANIMERAKRLKLDVAVHAIGDRGLDIALNAFE 327
RTA L PY ++ G + ++A L AVHAIGD LD L F
Sbjct: 260 RTAYLRRPYISGENEGWRGLKLLSSRDIAEEAVSNSHRGLATAVHAIGDAALDEVLEGFS 319
Query: 328 KAKLSG------RVEHASLVRDDQLERIRELGIRLSVQPHFIISDWWVVERVGEKRARWV 381
A G RVEHASL +Q++R+ L + VQP F +SDWW+ RVG +
Sbjct: 320 NAISRGVEPGMLRVEHASLAWPNQIDRLASLRVWTVVQPLFRVSDWWLESRVGSDMLQAA 379
Query: 382 YRFKDLLRV-AEVGFSTDAPIEPADPWLTVEAAVNRGKGVVKLYEFTKDQALTVEEALHC 440
Y F +LR ++ STDAP+E DP T +AAV G+ + ++LT E L
Sbjct: 380 YPFASMLRAGVKLALSTDAPVETYDPAETFKAAV----GLCSSRLCRESESLTPRETLKL 435
Query: 441 YTYGSARVS--LANDIGKLEPGFKAEYIVMDRDPL 473
YT SA S +G+L G A + V + D L
Sbjct: 436 YTLNSALASGGPVAWLGRLRRGAPALFAVANVDVL 470
>dbj|BAB06919.1| (AP001518) unknown conserved protein [Bacillus halodurans]
Length = 529
Score = 185 bits (466), Expect = 7e-46
Identities = 135/503 (26%), Positives = 250/503 (48%), Gaps = 44/503 (8%)
Query: 6 NGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPAFFDSH 65
NG +T +V + + ++V G + ++ + ++ G YV P F DSH
Sbjct: 7 NGTFFTMVHEGDQVEAVFTEDGKIVAIGTAEELRQRYSTRINQEMNCDGAYVYPGFVDSH 66
Query: 66 LHLDELGMSLEMVDLRGTKSMKELLERLKGG-----KGRIIFGFGWDQDELGEYPTKEVL 120
LH+ G L +DL + +++ E+L +G + GW+++ +P +++
Sbjct: 67 LHMIGHGEKLLRLDLSTVMNAEDMREKLMERVALTEEGDWVTAEGWNENN---FPDQKIF 123
Query: 121 --NEIDK-----PVFIYRKCFHVAVANDAMLELLNLEPSKDFEEDTG--MIKEKA----- 166
NE+D+ P+ + R C H + N L+L + SKD + G +++++
Sbjct: 124 HRNELDEIAPNHPMILTRVCRHAILVNSKALQLAGI--SKDTTDPPGGRIVRDELGEPTG 181
Query: 167 --LEEARKIINEKILSLEDYIHYIERA---------QEHLINLGVKSVAFMSVNEKAFKA 215
L+ A++++ S+ Y+ERA + L+ + + + + F
Sbjct: 182 YLLDTAQELVKRVAPSVS--AAYLERALAAAVDDMVAKGLVGGHTEDLGYYLGFNQTFAT 239
Query: 216 LFYLEREGKLKVNVSAYINPSILDKLEDLNLRRFN-GERLSITGVKLFTDGSFGARTALL 274
+ + ++ ++D + + GE L +K+F DG+FG RTALL
Sbjct: 240 FQRVIDGNTRRFRAHLLVHHEVIDDMIKAGYCKGPVGEWLEFGAMKIFADGAFGGRTALL 299
Query: 275 SEPYSDDPSTSGEMVSDEEELANIMERAKRLKLDVAVHAIGDRGLDIALNAFEKAKLS-- 332
SEPY D P+TSG + +E+L N++++A++ KL VA+H IGD L +A+ + E ++
Sbjct: 300 SEPYCDAPTTSGVAIHTQEQLTNLIKKARQYKLPVAIHTIGDEALRMAITSIEAHPVTEG 359
Query: 333 -GRVEHASLVRDDQLERIRELGIRLSVQPHFIISDW-WVVERVGEKRARWVYRFKDLLRV 390
R+ H + +ER+++L + L +QP F+ +D+ WV ER+G +R + + +K LLR
Sbjct: 360 RDRLIHTQVTPPSLVERMKKLKVILDIQPAFVPADFPWVEERLGNERLSYSFAWKTLLRS 419
Query: 391 A-EVGFSTDAPIEPADPWLTVEAAVNRGKGVVKLYEFTKDQALTVEEALHCYTYGSA-RV 448
+ +DAPIE DP + AAV R K + + ++ LT EAL YT GSA +
Sbjct: 420 GMALAGGSDAPIEEVDPLYGIYAAVARKKPTDQHEGYLPEEKLTRYEALQLYTTGSAYAI 479
Query: 449 SLANDIGKLEPGFKAEYIVMDRD 471
++ G + PG+ A++ +++R+
Sbjct: 480 EREHERGNIRPGYVADFTMLNRN 502
>gb|AAG20078.1| (AE005087) Vng1880c [Halobacterium sp. NRC-1]
Length = 506
Score = 181 bits (455), Expect = 1e-44
Identities = 154/468 (32%), Positives = 216/468 (45%), Gaps = 32/468 (6%)
Query: 20 SGLVISNDRVV-YAGDSSVAKRIVELSGGEVIDLKGKYVMPAFFDSHLHLDELGMSLEMV 78
S + I + R+V + D A R +G +DL G+ V+P F D+H HL LG
Sbjct: 29 SAVAIRDGRIVGLSNDYDAAFRAD--TGTREVDLGGRVVVPGFVDAHTHLAVLGKHGVHA 86
Query: 79 DLRGTKS----MKELLERLKGGKGRIIFGFGWDQDELGEYPTKEVLNEID--KPVFIYRK 132
DLRG S L ER + + GFG+D + + L+ + +PV R+
Sbjct: 87 DLRGADSPAAATARLAERARETDAGWVLGFGYDDSQWSAALSTADLDAVSEARPVAAIRE 146
Query: 133 CFHVAVAND-AMLELLNLEPSKDFEEDTGMIKEKALEEARKIINEKILSLEDYIHYIERA 191
H A N A+ E + P+ D ED G I E A+E + + I E A
Sbjct: 147 DMHTATVNGVALAEHGDEMPAADVGED-GRIVEDAVEAVYDATDPDLAGTRPLI---EAA 202
Query: 192 QEHLINLGVKSVAFMSVNEKAFKALFYLEREGKLKVNVSAYINPSILDKLEDLNL-RRFN 250
Q GV +V M + A + L+ G+L V V LD + + L
Sbjct: 203 QREANERGVTAVHEMVRDSHAPRVYRELDAAGELSVRVRLNYWADHLDAVLETGLVTNHG 262
Query: 251 GERLSITGVKLFTDGSFGARTALLSEPYSDDPSTSGEMVSDEEELANIMERAKRLKLDVA 310
G +++ G+K +TDGS G RTA LSEPY+D P +G+ V D LA ++ERA L V
Sbjct: 263 GGMVTVGGIKTYTDGSLGGRTAKLSEPYADAPGETGQWVVDPSALAALVERADDAGLQVV 322
Query: 311 VHAIGDRGLDIALNAFEKA-KLSGRVEHASLVRDDQLERIRELGIRLSVQPHFII---SD 366
HAIGD +D L+A+E A + R+EHA L DD +ER+ +LG+ SVQP+F+ S
Sbjct: 323 AHAIGDAAVDAVLDAYEDAGERRHRIEHAELASDDAIERMADLGVVASVQPNFLKWAGSG 382
Query: 367 WWVVERVGEKRARWVYRFKDLLRV-AEVGFSTDAPIEPADPWLTVEAAVNRGKGVVKLYE 425
+R+G R RF D+L +V F +D P P + V AV
Sbjct: 383 GLYADRLGTARREASNRFADMLDAGVDVAFGSDC--MPLAPLVGVHHAVTAPADA----- 435
Query: 426 FTKDQALTVEEALHCYTYGSARVSLAND-IGKLEPGFKAEYIVMDRDP 472
Q L+V AL YT G AR D G + G A+ V+D P
Sbjct: 436 ----QRLSVTAALRAYTSGGARAGCREDEQGVIREGALADLTVLDASP 479
>pir||D72390 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980831|gb|AAD35417.1|AE001714_8 (AE001714)
conserved hypothetical protein [Thermotoga maritima]
Length = 434
Score = 151 bits (377), Expect = 2e-35
Identities = 127/466 (27%), Positives = 214/466 (45%), Gaps = 65/466 (13%)
Query: 23 VISNDRVVYAGDSSVAKRI-------VELSGGEVIDLKGKYVMPAFFDSHLHLDELGMSL 75
+I +V++G V K + VE S VID KG +++P F DSH H+ G S
Sbjct: 1 MIIKGALVWSGKEFVQKDLFVENGEFVEKSSEPVIDAKGYFLVPGFVDSHAHVVGTGFSK 60
Query: 76 EMVDLRGTKSMKELLERLKGGKGRIIFGFGWDQDELGEYPTKEVLNEIDKPVFIYRKCFH 135
V EL ER ++ G GW ++ G E L+ I+ PVF+ R+C H
Sbjct: 61 LSVQFN---DWDELFER--DLTSEVVVGRGWFEEPDGS--VVERLDRIEAPVFLIRRCGH 113
Query: 136 VAVANDAMLELLNLEPSKDFEEDTGMIKEKALEEARKIINEKILSLEDYIHYIERAQEHL 195
A N +E+L +E E+ L E + I E + E + +E
Sbjct: 114 KAFLNKKAMEVLGVE-------------ERYLVENLEKIYEYVFK-EKIAEFYRVGEEEF 159
Query: 196 INLGVKSVAFMSVNEKAFKALFYLEREGKLKVNVSAYINPSILDKLE--DLNLRRFN--G 251
+ GV V + + + L + + +++ + +KL+ DL F
Sbjct: 160 LKHGVTFVQSDDLYGVSVERLLSIIKHSRIR----------LFEKLKPKDLKPEHFGDLN 209
Query: 252 ERLSITGVKLFTDGSFGARTALLSEPYSDDPSTSGEMVSDEEELANIMERAKRLKLDVAV 311
+R+ + GVK+F DGS GA+TAL+S Y D T G + EE+L + L + V
Sbjct: 210 KRVHVKGVKVFMDGSLGAKTALISGEYDD--GTQGVQLLTEEKLEELARFCDEHDLILNV 267
Query: 312 HAIGDRGLDIALNAFEKAKLSGRVEHASLVRDDQLERIRELGIRLSVQPHFIISDWWVVE 371
HAIGD + + L+ E+ + R+ HA V++ L+R++ SVQPHF D +++
Sbjct: 268 HAIGDSAVSLVLDVLERHR-GHRIIHAQFVQEKDLQRVK--NTTFSVQPHFFFEDQPLLK 324
Query: 372 RVGEKRARWVYRFKDLLRVAEVGFSTDAPIEPADPWLTVEAAVNRGKGVVKLYEFTKDQA 431
+V + + ++ + FS+D+P+ P DP E A+ G
Sbjct: 325 KVKVNALHYPF-YRMFKAGVSISFSSDSPVSPCDPKYIAEHALKMG-------------- 369
Query: 432 LTVEEALHCYT-YGSARVSLANDIGKLEPGFKAEYIVMDRDPLVMK 476
+ EE + T G+++V + GK+E G++A++ + +R+PL+ +
Sbjct: 370 FSREETFYLMTEAGASQVGIKT--GKIEAGYRADFCLYERNPLLFE 413
>pir||D75261 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460365|gb|AAF12081.1|AE002083_5 (AE002083)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 496
Score = 139 bits (346), Expect = 8e-32
Identities = 127/441 (28%), Positives = 201/441 (44%), Gaps = 28/441 (6%)
Query: 48 EVIDLKGKYVMPAFFDSHLHLDELGMSLEMVDLRGTKSMKELLERLKGGK-----GRIIF 102
EV+D + ++ P D+H HL G SL +D++G +S+ E+ RL+ G I
Sbjct: 46 EVLDHRDLHLTPGLCDAHTHLVMYGASLSQLDVQGVRSVDEVRARLRERAAQTPAGEWIV 105
Query: 103 GFGWDQDELG--EYPTKEVLNEI--DKPVFIYRKCFHVAVANDAMLELLNLEPSKDFEED 158
G G+ ELG YPT L+ + D PV ++ + H+ N L + E
Sbjct: 106 GGGFLLSELGLSGYPTAADLDAVSPDHPVLLHSRDHHMIWVNSRALAAAGIHDQTPDPEG 165
Query: 159 TGMIKEKAL--EEARKIINEKIL--SLEDYIHYIERAQEHLINLGVKSVAFMSVNEKAFK 214
++ E A+ +++E++ S +++ + + L G S M+ + A
Sbjct: 166 GHIVHPLGCLQENAQALVSERVPAPSESEWLAHARAGAQDLAARGYVSTHTMAFEDAAAP 225
Query: 215 -ALFYLEREGKLKVNVSAYINPSILDKLEDLNLRRFNGERLSITGVKLFTDGSFGARTAL 273
AL L G+L + V A + L L L R G GVK F DG+ G+RTA
Sbjct: 226 LALQTLAARGELPLRVWACLPHERLSAARSLGLSRVPGGLFQWGGVKFFADGALGSRTAW 285
Query: 274 LSEPYSDDPSTSGEMVSDEEELANIMERAKRLKLDVAVHAIGDRGLDIALNAFEKAK--- 330
L P D S +G + + + A RL L HAIGDR L+ +E+ +
Sbjct: 286 LHAPGFADGSGTGIALDSPDLILERGREALRLGLTPVTHAIGDRANTEVLDVYEQLRPEA 345
Query: 331 ----LSGRVEHASLVRDDQLERIRELGIRLSVQPHFIISDWWVVERVGEKRARWVYRFKD 386
+ RVEHA +R + L R R G+ SVQP + +D ++ + +R + Y F+
Sbjct: 346 EARGIRLRVEHAQHLRPEDLPRFR--GLTASVQPVHLPADAAMIRELLPQREQTSYAFRS 403
Query: 387 LLRV-AEVGFSTDAPIEPADPWLTVEAAVNR-GKGVVKLYEFTKDQALTVEEALHCYTYG 444
L A + F +DAP+ P AAV+R G + L +ALT ++ L YT G
Sbjct: 404 LKDAGAILAFGSDAPVAPPSVQGNFAAAVSRLGDDGLPL---APAEALTPDDVLWAYTRG 460
Query: 445 SARVSLANDIGKLEPGFKAEY 465
A + +D G ++PG +A +
Sbjct: 461 PALAAGWDDEGWVKPGARAAF 481
>pir||C70945 hypothetical protein Rv2052c - Mycobacterium tuberculosis (strain
H37RV) >gi|2896789|emb|CAA17266.1| (AL021899)
hypothetical protein Rv2052c [Mycobacterium
tuberculosis]
Length = 534
Score = 136 bits (339), Expect = 5e-31
Identities = 132/507 (26%), Positives = 214/507 (42%), Gaps = 67/507 (13%)
Query: 1 MKALINGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPA 60
+K L+NG +Y+ P + + + + D V + G V + + +V DL G++V P
Sbjct: 6 VKLLVNGRVYSPTHP--EATAMAVRGDVVAWLGSDDVGRD--QFPDADVQDLDGRFVAPG 61
Query: 61 FFDSHLHLDELGMSLEMVDLRGTKSMKELLERLKG----GKGRIIFGFGWDQDELGEY-- 114
F DSH+HL G+ L +DLR S + L + G+ ++G GWD+ E
Sbjct: 62 FVDSHIHLTATGLMLSGLDLRPATSRAQCLRMVADYAADHPGQPLWGHGWDESAWPENAA 121
Query: 115 PTKEVLNEI--DKPVFIYRKCFHVAVANDAMLELL-NLEPSKDFEED---TGMIKEKALE 168
P+ L+ + D P ++ R H A+ + + L+ L + + TG A
Sbjct: 122 PSTADLDAVLGDCPAYLARIDSHSALVSSGLRRLVPELAAATGYTAQRPLTGDAHHLARA 181
Query: 169 EARKIINEKILSLEDYIHYIERAQEHLINL-GVKSVAFMSVNEKAFKALFYLEREGKLK- 226
AR ++ + ++ A + L + + ++V+E A + L+ +L+
Sbjct: 182 AARYLLTD-----------VQLADARAVALQAIAAAGVVAVHECAGPEIGGLDDWLRLRA 230
Query: 227 ----VNVSAYINPSILDKLEDLNLRRFNGERLSITGVKLFTDGSFGARTALLSEPYSDDP 282
V V Y ++ + +L G R + G LF DG+ G+RTA L EPY+D P
Sbjct: 231 LEHGVEVIGYWGEAVATPAQARDLVTETGAR-GLAG-DLFVDGALGSRTAWLHEPYADAP 288
Query: 283 STSGEMVSDEEELANIMERAKRLKLDVAVHAIGDRGLDIALNAFEK----------AKLS 332
G D + + + + ++ H IGD + A+ AFE+ A+
Sbjct: 289 DCIGTCHLDVDGIEAHVRACTKAEVTAGFHVIGDAAVSAAVAAFERVVADLGVVAVARCG 348
Query: 333 GRVEHASLVRDDQLERIRELGIRLSVQPHFII----SDWWVVERVGEKRARWVYRFKDLL 388
R+EH +V DQ ++ G+ SVQP+F D R+G +R L
Sbjct: 349 HRLEHVEMVTADQAAKLGAWGVIASVQPNFDELWGGGDGMYARRLGAQRGS---ELNPLA 405
Query: 389 RVAEVG----FSTDAPIEPADPWLTVEAAVNRGKGVVKLYEFTKDQALTVEEALHCYTYG 444
+A G +DAP+ DPW +V AAVN T ++ A T G
Sbjct: 406 LLASQGVPLALGSDAPVTGFDPWASVRAAVNHR---------TPGSGVSARAAFAAATRG 456
Query: 445 SARVSLAND--IGKLEPGFKAEYIVMD 469
R D IG L PG A Y + D
Sbjct: 457 GWRAGGVRDGRIGTLVPGAPASYAIWD 483
>pir||G83339 hypothetical protein PA2448 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948496|gb|AAG05836.1|AE004672_4
(AE004672) hypothetical protein [Pseudomonas aeruginosa]
Length = 580
Score = 134 bits (334), Expect = 2e-30
Identities = 134/535 (25%), Positives = 238/535 (44%), Gaps = 78/535 (14%)
Query: 4 LINGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPAFFD 63
++N I+T+ L + + R++ GD + + + + +V+DL GK +MP D
Sbjct: 28 VVNARIFTANPQQPFAEALAVEDGRILAVGDEAGLRALAD-GDSQVVDLGGKRLMPGLID 86
Query: 64 SHLHLDELGMSLEMVDLRGTK-SMKELLERLKG----GKGRI-----IFGFG---WDQDE 110
+H H G+ L D+ + + EL RL+ GK R + G W Q
Sbjct: 87 THSHAVFGGLELAGADMGNEQVGLDELERRLRAWRDNGKARHGDMLNVSGMHTAYWSQ-- 144
Query: 111 LGEYPTKEVLNE-IDKPVFIYRKCFHVAVANDAMLELLNLEPSK-----DFEEDT----- 159
+ ++ + E D+P+ H AN AML+ ++ ++ + + +T
Sbjct: 145 VKDFRARFDHGEWADQPLAFIGSDHHTGWANAAMLKRAGIDAARVRALPEEQRNTIGHDA 204
Query: 160 -----GMIKEKALEEARKIINEKILSLEDYIHYIERAQEHLINLGVKSVAFMSVNEKAFK 214
G + + L+ ++ S E + A + +LG+ + + N
Sbjct: 205 DATPNGFLADAGLDAVLAVLPAP--SAEQMLEAGRSAVRYSNSLGLTAWMDPAANGSPGD 262
Query: 215 ALFYLERE----------------GKLKVNVSAYI------NPSILDKLEDLNLRRFNGE 252
ALF L + G+L +V+A + P+ L+ L+ + R
Sbjct: 263 ALFSLRPDENTVGVLPVYHRLAKGGELSAHVAALLVANPRSRPTDLEVLDKVRQRFLGSP 322
Query: 253 RLSITGVKLFTDG--SFGARTALLSEPYSDDPSTSGEMVSDEEELANIMERAKRLKLDVA 310
L++ G+K+F DG + A+TA L EPY + T GE++ D ++ A V
Sbjct: 323 NLTLPGIKVFADGVPEYPAQTAALLEPYRNSRKT-GELLIDPAHFGELVSAADARGWLVH 381
Query: 311 VHAIGDRGLDIALNAFEKAK------LSGRVEHASLVRDDQLERIRELGIRLSVQPHFII 364
VHAIGDR + ALN ++A+ ++ + H LV + ER R LG+ S+Q ++
Sbjct: 382 VHAIGDRAVREALNGMQQARRDRDSGIAHSITHLQLVNPKEFERFRPLGVIASMQLYWAA 441
Query: 365 SDWWVVERVGEKRARWVYRFKD-----LLRVAEVGFSTDAPIEPADPWLTVEAAVNRG-- 417
+D V+ + + + YR++ L + A + ++D P+ PW ++ AV R
Sbjct: 442 ADETTVDLMKPYISAFAYRYQYPAHSLLSKGATIAGASDWPVSSLSPWKAIQQAVTRKGP 501
Query: 418 KGVVKLYEFTKDQALTVEEALHCYTYGSAR-VSLANDIGKLEPGFKAEYIVMDRD 471
+GV+ E Q + + YT +AR + L + IG LEPG +A++IV+DRD
Sbjct: 502 QGVLNAGERLDRQTM-----FYAYTRNAARTIGLEHRIGSLEPGKQADFIVLDRD 551
>emb|CAB61667.1| (AL133213) hypothetical protein SC6D7.15. [Streptomyces coelicolor
A3(2)]
Length = 536
Score = 134 bits (334), Expect = 2e-30
Identities = 135/501 (26%), Positives = 207/501 (40%), Gaps = 55/501 (10%)
Query: 4 LINGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPAFFD 63
L G +++ P + +V+ +V + G A + EVIDL G V PAF D
Sbjct: 15 LRRGEVHSPADPF--ATAMVVERGQVAWVGSEGAADAFAD-GVDEVIDLDGALVTPAFTD 71
Query: 64 SHLHLDELGMSLEMVDLRGTKSMKELLERLKGGKG-----RIIFGFGWDQDEL--GEYPT 116
+H+H G++L +DL G + + L ++ R++ G GWD G+ P
Sbjct: 72 AHVHTTATGLALTGLDLSGAPTREAALALVRDFAAARPDDRVLLGHGWDAARWPDGQPPA 131
Query: 117 KEVLNEID--KPVFIYRKCFHVAVANDAMLELLNLEPSKDFEEDTGMIKEKALEEARKII 174
+ L+ +P+++ R H AV A+L+L D G + A R
Sbjct: 132 RAELDAATGGRPLYLSRIDVHSAVVTTALLDLA----PGDLARGDGPLTGDAHHAVRAAA 187
Query: 175 NEKILSLEDYIHYIERAQEHLINLGVKSVAFMS----VNEKAFKALFYLEREGKLKVNVS 230
+ + A H +LG+ +V + +E L L E + V
Sbjct: 188 LGAVTPAQR-ADAQRAALAHAASLGIGTVHECAGPDISSEDDLTGLLRLSAE-EPGPRVI 245
Query: 231 AYINPSILDKLEDLNLRRFNGERLSITGVKLFTDGSFGARTALLSEPYSDDPSTSGEMVS 290
Y +DK +L G+ LF DGS G+ TA L +PY+D T G
Sbjct: 246 GYWAEQDVDKARELGAVGAAGD--------LFVDGSLGSHTACLHQPYADAGHT-GTAHL 296
Query: 291 DEEELANIMERAKRLKLDVAVHAIGDRGLDIALN----AFEKAKLSG------RVEHASL 340
D +A + L HAIGD + + A +K L+ R+EHA +
Sbjct: 297 DAAAVAAHVVACTEAGLQAGFHAIGDAAVSAVVEGVRAAADKIGLARVRAARHRIEHAEM 356
Query: 341 VRDDQLERIRELGIRLSVQPHFII----SDWWVVERVGEKRARWVYRFKDLLRVA-EVGF 395
+ + + ELG+ SVQP F D R+G +RAR + F LLR + F
Sbjct: 357 LTPETVAAFAELGLTASVQPAFDALWGGEDGMYARRLGAERARTLNPFAALLRAGVPLAF 416
Query: 396 STDAPIEPADPWLTVEAAVNRGKGVVKLYEFTKDQALTVEEALHCYTYGSARVSLANDIG 455
+D+P+ P DPW TV AA + T + ++V A +T G R +D G
Sbjct: 417 GSDSPVTPLDPWGTVRAAA---------FHRTPEHRVSVRAAFTAHTRGGWRAIGRDDAG 467
Query: 456 KLEPGFKAEYIVMDRDPLVMK 476
L PG A+Y V LV++
Sbjct: 468 VLVPGVPADYAVWRTGELVVQ 488
>pir||T49197 hypothetical protein F27K19.30 - Arabidopsis thaliana
>gi|7573480|emb|CAB87839.1| (AL163832) putative protein
[Arabidopsis thaliana]
Length = 565
Score = 128 bits (318), Expect = 2e-28
Identities = 128/498 (25%), Positives = 222/498 (43%), Gaps = 65/498 (13%)
Query: 6 NGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPAFFDSH 65
NG I+TS L + I N R++ G + K + G ++L+GK V+P DSH
Sbjct: 70 NGTIFTSDSSLPFADSMAIRNGRILKVGSFATLKGFIG-DGTMEVNLEGKIVVPGLIDSH 128
Query: 66 LHLDELGMSLE-MVDLRGTKSMKELLERLKGGKGRIIFGFGWDQDELGEYPTKEVLNEID 124
+HL G+ + GT E L G +
Sbjct: 129 VHLISGGLQAHGFWVVAGTMISGEENCPLHHG--------------------------LM 162
Query: 125 KPVFIYRKCFHVAVANDAMLEL-----LNLEP------SKDFEEDTGMIKEKALEEARKI 173
K + H+A+AN L++ L +P E TG++ + A+E
Sbjct: 163 KSPLVILMDGHMALANSLALKIAGVISLTEDPVGGTIMRMPSGEPTGLLIDAAMELVTPW 222
Query: 174 INEKILSLEDYIHYIERAQEHLINLGVKSVAFMS---------VNEKAFKALF-YLEREG 223
+ E +S+++ + RA ++ + GV +V + ++ K F+ ++ Y +
Sbjct: 223 VKE--ISVDERREALFRASKYALTRGVTTVIDLGRYFPGTTDELSWKDFQDVYLYADSSK 280
Query: 224 KLKVNVSAYINPSILDKLEDLNLRRFN--GERLSITGVKLFTDGSFGARTALLSEPYSDD 281
K+ + + + +L DL L++ + E L + GVK F DGS G+ +AL E Y D
Sbjct: 281 KMMIRTCLFFPITTWSRLLDLKLQKGSVLSEWLYLGGVKAFIDGSLGSNSALFYEEYIDT 340
Query: 282 PSTSGEMVSDEEELANIMERAKRLKLDVAVHAIGDRGLDIALNAFEKAKLSG-------R 334
P+ G V D E+L+N A + L VA+HAIGD+ D+ L+ +E + R
Sbjct: 341 PNNYGLEVMDPEKLSNFTMAADKSGLQVAIHAIGDKANDMILDMYESVAAANGDRDRRFR 400
Query: 335 VEHASLVRDDQLERIRELGIRLSVQPHFIISDW-WVVERVGEKRA-RWVYRFKDLLR-VA 391
+EHA + R +L I SVQP ++ D V +++G +RA + Y F+ LL A
Sbjct: 401 IEHAQHLAPGSANRFGQLHIVASVQPDHLLDDADSVAKKLGSERAVKESYLFQSLLNGNA 460
Query: 392 EVGFSTDAPIEPADPWLTVEAAVNRGKGVVKLYEFTKDQALTVEEALHCYTYGSARVS-L 450
+ +D P+ +P ++ AV R + + + ++ +AL T +AR + L
Sbjct: 461 LLALGSDWPVADINPLHSIRTAVKRIPPKWD-HAWIPSERISFTDALIAQTISAARAAFL 519
Query: 451 ANDIGKLEPGFKAEYIVM 468
+ +G L PG A+++++
Sbjct: 520 DHHLGSLSPGKLADFVIL 537
>pir||H70422 hypothetical protein aq_1412 - Aquifex aeolicus
>gi|2983822|gb|AAC07378.1| (AE000739) putative protein
[Aquifex aeolicus]
Length = 361
Score = 120 bits (299), Expect = 3e-26
Identities = 101/322 (31%), Positives = 163/322 (50%), Gaps = 28/322 (8%)
Query: 63 DSHLHLDELGMSLEMVDLRGTKSMKELLERLKGGKGRIIFGFGWDQDELGEYPTKEVLNE 122
D+H HL+ +S V K +ELL+ LK K + +G D G T E LN
Sbjct: 4 DAHTHLELFAIS--EVPFHEFKKKEELLKFLKSLKRDYLVAYGLDY---GLGITPEDLNT 58
Query: 123 IDKPVFIYRKCFHVAVANDAMLELLNLEPSKDFEEDTGMIKEKALEEARKIINEKILSLE 182
++ P+ + K H + N M +LLN E + E L EA + K +L
Sbjct: 59 VNFPLLLIYKDGHKGILNKHMKKLLNKEGY--------FLVEHELWEAANKLKPKGEALR 110
Query: 183 DYI-HYIERAQEHLINLGVKSVAFMSVNEKAFKALFYLEREGKLKVNVSAYINPSILDKL 241
I + +++A+E +G+ V V+E+ + F E L +NV L +
Sbjct: 111 KAIRNALKKAKE----MGISEVHDY-VDEEVARIYFSEE----LPINVVLMPYYESLKSV 161
Query: 242 EDLNLRRFNGERLSITGVKLFTDGSFGARTALLSEPYSDDPSTSGEMVSDEEELANIMER 301
L ++ E+L + VK++ DGS ARTA L EPY D T G+++ EE+L I++
Sbjct: 162 LKLFEQKGESEKLQLGWVKVYLDGSISARTAHLKEPYRDT-KTKGKLLISEEKLLKILKE 220
Query: 302 AKRLKLDVAVHAIGDRGLDIALNAFEKAKLS---GRVEHASLVRDDQLERIRELGIRLSV 358
+ L L ++HAIGD +++A+ AFEK + R+EHA L+ +DQ+ R++EL + L +
Sbjct: 221 LESLNLRASLHAIGDGAIEVAIKAFEKLEPKLKYHRIEHAELISEDQIRRVKELNLLLCM 280
Query: 359 QPHFIISDWWV-VERVGEKRAR 379
QP+F + +E +GE+R +
Sbjct: 281 QPNFTCYYREIYLEALGEERTK 302
>emb|CAC11800.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 431
Score = 116 bits (288), Expect = 5e-25
Identities = 120/438 (27%), Positives = 199/438 (45%), Gaps = 66/438 (15%)
Query: 51 DLKGKYVMPAFFDSHLHLDELGMSLEMVDLRGTKSMKELLERLK--GGKGRIIFGFGWDQ 108
DL G YV+P F DSH HL G+ ++L ++ E ++ ++ K + + WD+
Sbjct: 8 DLSGGYVLPGFIDSHAHLLSTGLEQTRLNLFEYEAKIEAIDAIRRYAEKHDKVVAYRWDE 67
Query: 109 DELGEYPTKEVLNEID---KPVFIYRKCFHVAVAND-AMLELLNLEPSKDFEEDTGMIKE 164
+ PT +++D KPV +R+ H+AVAND AM + P F E+ + +
Sbjct: 68 SRWRDDPTYITASDLDGIVKPVVAFRRDGHMAVANDQAMRSIGQHRPDGIFREEDMQMLD 127
Query: 165 KALEEARKIINEKILSLEDYIHYIERAQEHLINLGVK-SVAFMSVNEKAFKALFYLEREG 223
++ E+Y+ ++ A +G+ S+ V + +A + R
Sbjct: 128 PLVKPGE----------EEYVQALQTA------IGISASLGITGVRDIVDRATYDAYRRI 171
Query: 224 KLKVNVSAYINPSILDKLEDLNLRRFNGERLSITGVKLFTDGSFGARTALLSEPYSDDPS 283
K V + I EDL F G S GVK F DGS GARTA + +
Sbjct: 172 KSNVRIFKVI------YAEDL-FAGF-GSDPSDWGVKTFLDGSLGARTA------AHEGW 217
Query: 284 TSGEMVSDEEELANIMERAKRLKLDVAVHAIGDRGLDIALNAFEK--AKLSGRVEHASLV 341
+ + E++ E L VAVHAIGD + +A + + +EH LV
Sbjct: 218 DTKNLKMSEQQFERFCEGTWSRNLPVAVHAIGDLAVRVAAETMHRHAGRQRNSIEHFELV 277
Query: 342 RDDQLERIRELGIRLSVQPHFIISDW-----WVVERVGEKRARWVYR---FKDLL-RVAE 392
D L+ I + +S QP+F+ +W +R+GE W+YR ++D+L + +
Sbjct: 278 EDGVLD-IIDANTIVSAQPNFL--EWAGHGGMYQDRLGES---WLYRNNPYRDILDKGLK 331
Query: 393 VGFSTDAPIEPADPWLTVEAAVNRGKGVVKLYEFTKDQALTVEEALHCYT-YGSARVSLA 451
+ F +D+ P P + AVN EF++ Q +T +EA+ Y+ GS +
Sbjct: 332 LAFGSDS--MPLGPMYGIHYAVNS--------EFSQ-QRITFDEAVRSYSEAGSYLIGAE 380
Query: 452 NDIGKLEPGFKAEYIVMD 469
N IG++E G+ A++ V +
Sbjct: 381 NWIGRIETGYSADFAVFN 398
>pir||T49745 hypothetical protein B24B19.170 [imported] - Neurospora crassa
>gi|7899437|emb|CAB91804.1| (AL356192) conserved
hypothetical protein [Neurospora crassa]
Length = 601
Score = 111 bits (276), Expect = 1e-23
Identities = 128/469 (27%), Positives = 207/469 (43%), Gaps = 73/469 (15%)
Query: 49 VIDLKGKYVMPAFFDSHLHLDELGMSLEMVDLRGTKSMK-ELLERLKGGKGRIIFGFGWD 107
V++ K +V+P +D H HL + G L VDL G S++ +LE KG+ I
Sbjct: 112 VVETKAGHVIPGIWDGHGHLVQYGEFLHSVDLFGASSVEMAMLESDPALKGKYI------ 165
Query: 108 QDELGEYPTKEVLNEIDKPVFIYRKCFHVAVANDAMLELLNLEPSKDFEEDTGMIKEKAL 167
+L+ +D H + A+L+L+ E + +I+E L
Sbjct: 166 -----------MLDRVD---------VHCTWVSQAILDLIPAESLPEEVPGGEIIREPGL 205
Query: 168 EEARKIINEKILSL------EDYIHYIERAQEHLINLGVKSVAFMSVNEKAFKALFYLER 221
+ + SL E +++ A + L +G+ + V K R
Sbjct: 206 GVFCDNAMDIVTSLWPKPDAERKKTFLKTAMKELHKVGLVGMNDAGVTPTDLKVYDEASR 265
Query: 222 -EGKLKVNVSAYIN---PSILDKLEDLNLRRFNGE-RLSITGVKLFTDGSFGARTALLSE 276
E + V A I ++ LE ++R + + L+I VKLF DG+ G+ + + +
Sbjct: 266 NEDWWTLRVYAMIECGERNVFCPLEADSVRTQHEDGMLTIRSVKLFADGALGSWGSAMID 325
Query: 277 PYSDDPSTSGEMVSDEEELANIMERAKRLKLDVAVHAIGDRGLDIALNAFEKAKLSG--- 333
PYSD PST G ++ + L ++ V +HAIGD A++A E A
Sbjct: 326 PYSDKPSTRGSLLVNGSTLESLARSWSNAGYQVNIHAIGDLANRYAIDALEAALKDACNL 385
Query: 334 ----------------RVEHASLVRDDQLERIRELGIRLSVQPHFIISDWWVVE-RVG-E 375
R+EH+ ++ RIR+LGI S+QP SD E R+G E
Sbjct: 386 PDGKTLKDCQQASHRFRIEHSQIIHPTDQARIRDLGIIPSIQPTHATSDMAYAELRLGPE 445
Query: 376 KRARWVYRFKDLLRVAEVG----FSTDAPIEPADPWLTVEAAVNR-----GKGVVKLYE- 425
+ A YR + L+ E+G +D P+EP +P+ + AAV R GKG +
Sbjct: 446 RTATEAYRMRSLIH--ELGVQPVLGSDFPVEPPNPFEGMYAAVTRKNPHTGKGADGGDKG 503
Query: 426 FTKDQALTVEEALHCYTYGSA-RVSLANDIGKLEPGFKAEYIVMDRDPL 473
+ D+AL++EEAL +T G A + G +E G A+++V+D +PL
Sbjct: 504 WYTDEALSLEEALAGFTKGVAGGMFTEGKTGVIEEGAFADWVVLD-EPL 551
>gb|AAF39741.1|AC005935_8 (AC005935) L7234.12 [Leishmania major]
>gi|7243849|gb|AAF43471.1|AC012381_7 (AC012381) L7234.12
[Leishmania major]
Length = 697
Score = 104 bits (257), Expect = 2e-21
Identities = 143/569 (25%), Positives = 230/569 (40%), Gaps = 147/569 (25%)
Query: 49 VIDLKGKY-VMPAFFDSHLHLDELGMSLEMVDL-------RGTKSMKELLE-RLKGGKGR 99
VID + ++ V P F DSH+H + G L L + T +++ +E R +G
Sbjct: 86 VIDCEHRHAVYPGFIDSHVHFLDGGRMLLAPQLGFATSRTQFTAIVRDFVEHRYNREEGG 145
Query: 100 IIFGFGWDQDELGEYPTKEVLNEIDKPVFI--YRKCFHVAVANDAMLELLNLEPSKDFEE 157
++G GW + LG PT+E L+E+ + + Y K H AV N A L ++ P + E
Sbjct: 146 WVYGVGWSEAVLGCSPTREWLDEVSTKIHLVMYSKDIHSAVMNTAALRSCHIIPGAEDGE 205
Query: 158 D------------------TGMIKEKALEEARKIINEKILSLEDYIHYIERAQEHLINLG 199
+G++++ A++ A++ +E A EHL++LG
Sbjct: 206 PLITSVEGGVIELNENGQPSGVLRDNAIQLAKRYAPAADTPANQR-RALEAATEHLLSLG 264
Query: 200 VKSV-AFMSV----NEKAFKALFYLEREGKLKVNVSAYINPSILDKLEDLNLR------- 247
SV + MS N L +EREG +++ V + S +++L D R
Sbjct: 265 FTSVFSMMSTTYMDNVSEINFLAQMEREGAMRLRVRYGVPLSDVERLMDKFYRVMATDAA 324
Query: 248 ------------RFN-------GERLSITGVKLFTDGSFGARTALLSEPYSDDPSTSGEM 288
RF G L + VKLF DGS +RTA ++ PY + +T G++
Sbjct: 325 QSGRSDDFTLPYRFTMTPPAAGGGYLLLGAVKLFADGSLSSRTAAMNRPYGYNVTTEGDI 384
Query: 289 VSDEEEL---ANIMERA-----------KRLKLDVA------------VHAIGDRGLD-- 320
SD ++ A + ER+ RL+L A VHAIGDR +
Sbjct: 385 DSDLDDAAISALLKERSGKQCQCGLLTMSRLELQCAIRVAHSHDLQCVVHAIGDRAVATV 444
Query: 321 --------------------IALNAFEKAKLSGRVEHASLVRD--DQLERIRELGIRLSV 358
+A A +A RVEH + +++R+ + GI S+
Sbjct: 445 NRALCASADWLRERGAEAGVVAAVARFRADPRSRVEHCQHMSSMTKEVKRMAQYGIIASM 504
Query: 359 QP-HFIISDWWVVERVGEKRARWVYRFKDLLRV-AEVGFSTDAPIEPADPWLTVEAAVNR 416
QP H + +V +G++R Y + LL V +D P+ PAD + AV R
Sbjct: 505 QPCHLLFDGDYVDTLLGQRRKDTSYMWGTLLAAKIRVDLGSDWPVAPADVNDGLRGAVTR 564
Query: 417 GKGV-------------------------------VKLYEFTKDQA--LTVEEALHCYTY 443
V ++ Y T + A ++++ AL YTY
Sbjct: 565 VPDVMTALAAEEAQYRSQQQAQPSADNTAACAATALRRYHDTWNPAECISMDAALRTYTY 624
Query: 444 -GSARVSLANDIGKLEPGFKAEYIVMDRD 471
G+ + + N +G LE G A+ V D
Sbjct: 625 EGAHGMFMENYLGTLEVGKYADITVWTAD 653
>pir||C70548 probable regulatory protein - Mycobacterium tuberculosis (strain
H37RV) >gi|2114014|emb|CAB08963.1| (Z95558) hypothetical
protein Rv0552 [Mycobacterium tuberculosis]
Length = 534
Score = 89.7 bits (219), Expect = 6e-17
Identities = 127/522 (24%), Positives = 212/522 (40%), Gaps = 73/522 (13%)
Query: 4 LINGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPAFFD 63
++ G + T + +++ RV+ GD S +V + VIDL VMP F +
Sbjct: 7 VMTGTVLTVDDARPTAEAIAVADGRVIAVGDRSEVAGLVG-ANTRVIDLGAGCVMPGFVE 65
Query: 64 SHLH--LDELGMSLEMVDLRGT--KSMKELLERLKGGKGRI----IFGFGWD---QDELG 112
+H H L+ + +S VD+R + +++ ++G R + GWD Q LG
Sbjct: 66 AHGHPLLEAVVLSDRFVDIRPVTMRDADDVVAAIRGEVARRGPAGAYLVGWDPLLQSGLG 125
Query: 113 EYPTKEVLNEI--DKPVFIYRKCFHVAVANDAMLELLNL-------EPSKDFEEDTGMIK 163
E PT L+ + + P+ I H A N L L + +K + G +
Sbjct: 126 E-PTLTWLDSLAPNGPLVIIHNSGHKAYFNSHAAWLNGLTRDTADPKGAKYGRDGNGELD 184
Query: 164 EKALEEARKIINEKILSLEDYIHY--IERAQEHLINLGVKSVAFMSVNEKAFKALFYLER 221
A EE I+ + + D ++ + RA+ +N + + ++ + R
Sbjct: 185 GTA-EEIGAIL-PLLAGVADPSNFGAMLRAECARLNRAGLTTCSEMAFDPGYRPMVEAVR 242
Query: 222 EGKLKVNVSAYINPSILDKLEDLNLRRFNG-------ERLSITGVKLFTDGSFGARTALL 274
+L V + Y E N R + L G+K++ DGS L
Sbjct: 243 -AELTVRLCTY---------EISNARMCTDATPGQGDDMLRQVGIKIWVDGSPWVGNIDL 292
Query: 275 SEPYSDDPSTSGEMVSD---------EEELANIMERAKRLKLDVAVHAIGDRGLDIALNA 325
+ PY D P+T V E+LA I+ +A H GD G+D L+
Sbjct: 293 TFPYLDTPATRAIGVPPGSRGCANYTREQLAEIVGAYFPRGWQIACHVHGDGGVDTILDV 352
Query: 326 FEKAKLSG-------RVEHASLVRDDQLERIRELGIRLSV---QPHF----IISDWWVVE 371
+E+A R+EH +R DQL R ELG+ S+ Q H+ I+ D + +
Sbjct: 353 YEEALRRNPRDDHRLRLEHVGAIRPDQLRRAAELGVTCSIFVDQIHYWGDVIVDDLFGAQ 412
Query: 372 RVGEKRARWVYRFKDLLRVAEVGFSTDAPIEPADPWLTVEAAVNRGKGVVKLYEFTKDQA 431
R +RW+ + + D P+ P +P + A R ++ ++
Sbjct: 413 R----GSRWMPAGSAVAAGMRISLHNDPPVTPEEPLRNISVAATRVAPSGRV--LAPEER 466
Query: 432 LTVEEALHCYTYGSARVSLAND-IGKLEPGFKAEYIVMDRDP 472
LTVE+A+ T +A A D IG L+ G A+ +V+ DP
Sbjct: 467 LTVEQAIRAQTIDAAWQLFAEDAIGSLQVGKYADMVVLSADP 508
>sp|Q06555|AEPA_ERWCA EXOENZYMES REGULATORY PROTEIN AEPA PRECURSOR
>gi|290671|gb|AAA71984.1| (L13457) regulatory protein
[Pectobacterium carotovorum]
Length = 465
Score = 82.7 bits (201), Expect = 8e-15
Identities = 89/363 (24%), Positives = 159/363 (43%), Gaps = 48/363 (13%)
Query: 6 NGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPAFFDSH 65
N IYT S LV+ ++VY G + AK + + E++DL+GK V+P F +SH
Sbjct: 27 NARIYTVNDRQPTASVLVVDQGKIVYVGGNDGAKPF-KATATELVDLEGKTVLPGFIESH 85
Query: 66 LHLDELGM--SLEMVDLRGTKSMKELLERLKG-----GKGRIIFGFGWDQDEL----GEY 114
H + + + + V + G +++ ++L +LK K + G++ L G
Sbjct: 86 AHPATVAVMEAGDFVYVDGARTLSQILSQLKAYLVAHPKANYLLAQGFNVASLGLPQGAL 145
Query: 115 PTKEVLNEIDK--PVFIYRKCFHVAVANDAMLELLNLE-------PSKD-FEED-----T 159
PT L+ + + P+ +Y H AN A L + +++ P K FE D T
Sbjct: 146 PTAADLDTVSESVPIVVYDSGMHAGWANSAALNVAHVDANTPDPIPGKHYFERDNKGNPT 205
Query: 160 GMIKEKALEEARKIINEKILSLEDYIHYIERAQEHLINLGVKSVAFM-SVNEKAFKALFY 218
G + E A+ + ++ ++E+ ++ + +LG ++ + A+
Sbjct: 206 GFMHESAMHNV--VDAQQFNAVENVAEKLQPILKTYHSLGFTAITDVGDTFSTTVAAIAR 263
Query: 219 LEREGKLKVNV-------SAYINPSILDKLEDLNLRRFNGERLSITGVKLFTDGSFGART 271
L +GKLKV +A + L+ L +++ LSI KLF DG+ +
Sbjct: 264 LNEQGKLKVYYQRGYFYDAAKSTEQNIASLKGLR-EKYHQGNLSINLYKLFMDGTIEMDS 322
Query: 272 ALLSEPYSD----DPSTSGEMVSDEEELANIMERAKRLKLDVAVHAIGDRGLDIALNAFE 327
+ +PY + +P S + ++D + A + V VHAIGD+ L+AF
Sbjct: 323 GAMYQPYPNGNVVEPFLSQKQINDN------VAAALKAGFSVHVHAIGDKAQQSILDAFA 376
Query: 328 KAK 330
K
Sbjct: 377 ANK 379
>pir||G83307 hypothetical protein PA2699 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948773|gb|AAG06087.1|AE004698_3
(AE004698) hypothetical protein [Pseudomonas aeruginosa]
Length = 612
Score = 82.7 bits (201), Expect = 8e-15
Identities = 129/517 (24%), Positives = 211/517 (39%), Gaps = 65/517 (12%)
Query: 4 LINGNIYTSFRPLRKVSGLVISNDRVVYAGDSSVAKRIVELSGGEVIDLKGKYVMPAFFD 63
L NG +T R + + I + + + G+ + A + S +VIDL+ + V+P D
Sbjct: 7 LHNGRFHTVDRDNPTATAVAIKDGKFLAVGNDAEAM-LHRGSATQVIDLQKRTVIPGLND 65
Query: 64 SHLHLDELGMSLEMVDLR--GTKSMKELLERLKGGKGRI-------IFGFGWDQDELGE- 113
SHLHL G++ + +LR G S+ + L L R + G GW++ + E
Sbjct: 66 SHLHLIRGGLNYNL-ELRWEGVPSLADALRMLNNQAERTPSPQWVRVVG-GWNEFQFAEK 123
Query: 114 -YPTKEVLNEI--DKPVFIYRKCFHVAVANDAMLELLNL----------EPSKDFE-EDT 159
PT E LN+ D PVF+ + A+ N A L ++ E +D E T
Sbjct: 124 RMPTLEELNKAAPDTPVFVLH-LYDRALLNRAALRVVGYTKDTPNPPGGEIVRDSSGEPT 182
Query: 160 GMI--KEKALEEARKIINEKILSLEDYIHYIERAQEHLINLGVKSV-----AFMSVNEKA 212
GM+ + A+ + L LE ++ + L LG+ S F + +
Sbjct: 183 GMLIARPNAMILYATLAKGPKLPLEYQVNSTRQFMRELNRLGLTSAIDAGGGFQNYPDD- 241
Query: 213 FKALFYLEREGKLKVNVSAYINPSILDKLEDLNLRRFNGERLSITGVKLFTDGSFGARTA 272
++ + L +G+L V + AY + K E + + + G G F G
Sbjct: 242 YQVIRELADQGQLTVRI-AYNLFTQKPKEELADFKNWTGSVKYGQGSDFFRHNGAGEMLV 300
Query: 273 LLS-------EPYSDDPSTSGEMVSDEEELANIMERAKRLKLDVAVHAIGDRGLDIALNA 325
+ EP D P T E+EL ++ + +HA D + L+
Sbjct: 301 FSAADFEDFLEPRPDLPQTM------EQELEPVVRHLVEQRWPFRLHATYDESISRMLDV 354
Query: 326 FEKAK-------LSGRVEHASLVRDDQLERIRELGIRLSVQPHFIISDWWVVERVGEKRA 378
FEK L +HA + +ER+R LG +++Q + V+R G K A
Sbjct: 355 FEKVDRDIPFNGLPWFFDHAETITPRNIERVRALGGGIAIQDRMAFQGEYFVDRYGAKAA 414
Query: 379 RWVYRFKDLL-RVAEVGFSTDAP-IEPADPWLTVEAAVN-RGKGVVKLYEFTKDQALTVE 435
+ +L VG TDA + +PW ++ V+ R G + LY Q L E
Sbjct: 415 EATPPIQRMLAEGVPVGAGTDATRVSSYNPWTSLYWLVSGRTVGGMALY----PQGLPRE 470
Query: 436 EALHCYTYGSARVSL-ANDIGKLEPGFKAEYIVMDRD 471
AL +T+GSA S G+++ G A+ + D
Sbjct: 471 TALQLFTHGSAWFSSEQGKKGQIKVGQLADLAALSAD 507
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.138 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169215018
Number of Sequences: 2977
Number of extensions: 7188047
Number of successful extensions: 19009
Number of sequences better than 1.0e-10: 19
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 18938
Number of HSP's gapped (non-prelim): 25
length of query: 476
length of database: 189,106,746
effective HSP length: 58
effective length of query: 418
effective length of database: 154,394,500
effective search space: 64536901000
effective search space used: 64536901000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 167 (69.5 bits)