BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1658 (PAB1658) DE:TRANSMEMBRANE TRANSPORT PROTEIN
(470 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75085 transmembrane transport protein PAB1658 - Pyrococcus... 945 0.0
pir||F71055 hypothetical protein PH1140 - Pyrococcus horikoshii ... 599 e-170
pir||D75104 transmembrane transport protein PAB1564 - Pyrococcus... 257 1e-67
pir||G71055 hypothetical protein PH1141 - Pyrococcus horikoshii ... 236 5e-61
pir||C69078 conserved hypothetical protein MTH1583 - Methanobact... 71 3e-11
>pir||E75085 transmembrane transport protein PAB1658 - Pyrococcus abyssi
(strain Orsay) >gi|5458498|emb|CAB49986.1| (AJ248286)
TRANSMEMBRANE TRANSPORT PROTEIN [Pyrococcus abyssi]
Length = 470
Score = 945 bits (2416), Expect = 0.0
Identities = 470/470 (100%), Positives = 470/470 (100%)
Query: 1 MKNKRALFLIISWALIFLPYVLTRKSPPGYIIGGDTLVHAAIARGIYLGRNPFLDQTYNV 60
MKNKRALFLIISWALIFLPYVLTRKSPPGYIIGGDTLVHAAIARGIYLGRNPFLDQTYNV
Sbjct: 1 MKNKRALFLIISWALIFLPYVLTRKSPPGYIIGGDTLVHAAIARGIYLGRNPFLDQTYNV 60
Query: 61 PPNWYPFLYHLIVAIFAKIVGIEKSMLMLQAVFSLLMLLIMYWIAKNLWGETAGIFVLSL 120
PPNWYPFLYHLIVAIFAKIVGIEKSMLMLQAVFSLLMLLIMYWIAKNLWGETAGIFVLSL
Sbjct: 61 PPNWYPFLYHLIVAIFAKIVGIEKSMLMLQAVFSLLMLLIMYWIAKNLWGETAGIFVLSL 120
Query: 121 SLLLLPAHRYPNPKELAPILGMISLYFSLRRKYYLGGLFAGLSLWTHYAVAAPLITFFLV 180
SLLLLPAHRYPNPKELAPILGMISLYFSLRRKYYLGGLFAGLSLWTHYAVAAPLITFFLV
Sbjct: 121 SLLLLPAHRYPNPKELAPILGMISLYFSLRRKYYLGGLFAGLSLWTHYAVAAPLITFFLV 180
Query: 181 LAIKNRKYMISLALALLTFSPFIVNVILHAQFLLPHVEDIYRFWITDTLERKLSSLLPPL 240
LAIKNRKYMISLALALLTFSPFIVNVILHAQFLLPHVEDIYRFWITDTLERKLSSLLPPL
Sbjct: 181 LAIKNRKYMISLALALLTFSPFIVNVILHAQFLLPHVEDIYRFWITDTLERKLSSLLPPL 240
Query: 241 YLIPLIFLALLRMYKEKDENAMKLFLFISIIAGMRLFPEILKPFGIDLWSSRFIGLLPYS 300
YLIPLIFLALLRMYKEKDENAMKLFLFISIIAGMRLFPEILKPFGIDLWSSRFIGLLPYS
Sbjct: 241 YLIPLIFLALLRMYKEKDENAMKLFLFISIIAGMRLFPEILKPFGIDLWSSRFIGLLPYS 300
Query: 301 YVLLASYGVRSLNGEILNVMALTLIPVFASLNFWYSVINDPFIQASSVELNEYFPQEHFV 360
YVLLASYGVRSLNGEILNVMALTLIPVFASLNFWYSVINDPFIQASSVELNEYFPQEHFV
Sbjct: 301 YVLLASYGVRSLNGEILNVMALTLIPVFASLNFWYSVINDPFIQASSVELNEYFPQEHFV 360
Query: 361 DVAEWIVKNTARDDVIGAGEEMGMMINALTGRPIIATMYGHGNIFLNNTERRHELKLLFL 420
DVAEWIVKNTARDDVIGAGEEMGMMINALTGRPIIATMYGHGNIFLNNTERRHELKLLFL
Sbjct: 361 DVAEWIVKNTARDDVIGAGEEMGMMINALTGRPIIATMYGHGNIFLNNTERRHELKLLFL 420
Query: 421 GNCSEKIIVLQKYRVKYVIVDPLTEAKNMSCVGKVIFRKGDVEIVKVGEL 470
GNCSEKIIVLQKYRVKYVIVDPLTEAKNMSCVGKVIFRKGDVEIVKVGEL
Sbjct: 421 GNCSEKIIVLQKYRVKYVIVDPLTEAKNMSCVGKVIFRKGDVEIVKVGEL 470
>pir||F71055 hypothetical protein PH1140 - Pyrococcus horikoshii
>gi|3257557|dbj|BAA30240.1| (AP000005) 507aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 507
Score = 599 bits (1528), Expect = e-170
Identities = 281/470 (59%), Positives = 367/470 (77%), Gaps = 4/470 (0%)
Query: 1 MKNKRALFLIISWALIFLPYVLTRKSPPGYIIGGDTLVHAAIARGIYLGRNPFLDQTYNV 60
M+ F I W L F+PY++TRKSPPGYIIGGDTLVHAAIARGI LGRNPFLDQTYNV
Sbjct: 1 MRKTYYFFFISIWTLTFIPYIITRKSPPGYIIGGDTLVHAAIARGILLGRNPFLDQTYNV 60
Query: 61 PPNWYPFLYHLIVAIFAK--IVGIEKSMLMLQAVFSLLMLLIMYWIAKNLWGETAGIFVL 118
PPNWYPFLYH+IVA AK + IEKSML+LQ + SLLM+L+M +A LWGE A I +
Sbjct: 61 PPNWYPFLYHMIVAGVAKGFSISIEKSMLVLQLILSLLMILVMSLVAGKLWGEEAEIVSM 120
Query: 119 SLSLLLLPAHRYPNPKELAPILGMISLYFSLRRKYYLGGLFAGLSLWTHYAVAAPLITFF 178
+LSLL+LP HRYPNPKELAPI G+ISL++ RR+Y + G+ GL+LWTHYAVA PL+ FF
Sbjct: 121 ALSLLMLPYHRYPNPKELAPIFGIISLFYLSRRRYIMSGILVGLALWTHYAVAFPLLLFF 180
Query: 179 LVLAIKNRKYMISLALALLTFSPFIVNVILHAQFLLPHVEDIYRFWITDTLERKLSSLLP 238
L L +K+R+Y++SL ++L+ FSPF+VN++LH++FL P VEDIY FW+ DT++RKL S+LP
Sbjct: 181 LTLGLKDRRYILSLIISLIIFSPFVVNILLHSEFLFPQVEDIYAFWVNDTVKRKLLSVLP 240
Query: 239 PLYLIPLIFLALLRMYKEKDENAMKLFLFISIIAGMRLFPEILKPFGIDLWSSRFIGLLP 298
P+YL PL+ LA ++ YK ++ + L F+ +I RL PE LKPFGI LWSSRF LLP
Sbjct: 241 PVYLAPLVALAGIKGYKRREREVLLLIAFVFVIIIARLSPETLKPFGIKLWSSRFTYLLP 300
Query: 299 YSYVLLASYGVRSL-NGEILNVMALTLIPVFASLNFWYSVINDPFIQASSVELNEYFPQE 357
Y YVLL++YG+ + ++ + LIP+ A +NF S+ DPF++ S+++L EYFPQE
Sbjct: 301 YVYVLLSAYGMLNFAKSKLGKFILFFLIPILAVVNFSASIAEDPFLKVSTLDLKEYFPQE 360
Query: 358 HFVDVAEWIVKNTARDDVIGAGEEMGMMINALTGRPIIATMYGHGNIFLNNTERRHELKL 417
HFV+VAEW+ KN RDD I AGEEM MMINALTGRP++ATMYGHGN FLNNT RR +L++
Sbjct: 361 HFVEVAEWVKKNIERDDTIAAGEEMSMMINALTGRPVVATMYGHGNTFLNNTRRRKDLEI 420
Query: 418 LFLGNCSEKIIVLQKYRVKYVIVDPLTEAKNMSCVGKVIFRKGDVEIVKV 467
LFLGNC+EK +++KY+V+Y+I+DP T AK+M C+G ++++ G+V I+KV
Sbjct: 421 LFLGNCNEKKGIVRKYKVRYIILDPPTTAKDMECLG-IVYKIGNVSILKV 469
>pir||D75104 transmembrane transport protein PAB1564 - Pyrococcus abyssi
(strain Orsay) >gi|5458649|emb|CAB50137.1| (AJ248286)
TRANSMEMBRANE TRANSPORT PROTEIN [Pyrococcus abyssi]
Length = 503
Score = 257 bits (651), Expect = 1e-67
Identities = 174/473 (36%), Positives = 256/473 (53%), Gaps = 47/473 (9%)
Query: 7 LFLIISWALIFLPYVLTRKSPPGYIIGGDTLVHAAIARGIYLGRNPFLDQTYNVPPNWYP 66
L+L++ ++ + RK P G GGDT++H A+ RGIYLGRNPFLDQ YNVPPNWYP
Sbjct: 9 LWLLLIAFIVNFAVIYGRKMPVG-ANGGDTIIHMAMIRGIYLGRNPFLDQHYNVPPNWYP 67
Query: 67 FLYHLIVAIFAKIVGIEKSMLML--QAVFSLLMLLIMYWIAKNLWGETAGIFVLSLSLLL 124
FLYH ++AI AK I LM+ +FS++M+ Y + + L + G+ + SLS L+
Sbjct: 68 FLYHSLIAILAKFTSIPIWTLMIWTPLIFSIIMVFAWYKLGRELNEKYGGLLLGSLSFLI 127
Query: 125 LPAHRYPNPKELAPILGMISLYFSLR-----RKYYLG--GLFAGLSLWTHYAVAAPLITF 177
+ + +PNPK L PI S LR +K +LG GLF GL +WTHY VA P++
Sbjct: 128 MKSQLFPNPKALIPIFLSASYLAFLRYYRDWKKKHLGYAGLFLGLMMWTHYGVALPVLIA 187
Query: 178 FLVLAIKNRKYMISLAL----ALLTFSPFIVNVILHAQ---FLLPHVEDIYRFWITDTLE 230
L+ ++ K SL L AL+ FSPFI+NVI + + L+ ++ +++T+
Sbjct: 188 ILLYSLFKFKEEKSLVLVPIIALVIFSPFIINVIANIEDGASLMVEGWNVASLSLSNTIR 247
Query: 231 RKLSSLLPPLYLIPLIFLALLRMYKEKDENAMKLFLFISI-IAGMRLFPEIL-KPFGIDL 288
R + PP++ LI L+LL M K +D LF+ I I G+ L P IL GI++
Sbjct: 248 R----IFPPVWGAILILLSLLYMNKAQDRIFWNFVLFVVIGIIGVNLLPSILFITTGIEI 303
Query: 289 WSSRFIGLLPYSYVLLASYGVRSL--------NGEILNVMALTLIPVFASLNFWYSVIND 340
+ SRF L Y+Y+LL + L N +++ + + V+ SL+F + ++
Sbjct: 304 FPSRFAISLHYTYLLLYLCAILGLVESKYIRGNKKLVTYLISLIFLVYGSLSFVHYNFHN 363
Query: 341 PFIQASSVELNEYFPQEHFVDVA-----------EWIVKNTARDDVIGAGEEMGMMINAL 389
P S+ + F D+A WI NT RDD + I
Sbjct: 364 P----SAPPFLPNYTYVEFEDLAGNYTRGLLIISSWIRNNTGRDDCLIGYPYTLEWIAGF 419
Query: 390 TGRPIIATMYGHGNIFLNNTERRHELKLLFLGNCSEKIIVLQKYRVKYVIVDP 442
TGRP++A YGHGN FLN +RRH++K F + S++ + +KY VKYVI+DP
Sbjct: 420 TGRPVVAVSYGHGNPFLNMRQRRHDIK-EFFRDPSKRTAIAEKYGVKYVILDP 471
>pir||G71055 hypothetical protein PH1141 - Pyrococcus horikoshii
>gi|3257558|dbj|BAA30241.1| (AP000005) 502aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 502
Score = 236 bits (595), Expect = 5e-61
Identities = 161/472 (34%), Positives = 253/472 (53%), Gaps = 32/472 (6%)
Query: 1 MKNKRA--LFLIISWALIFLPYVLTRKSPPGYIIGGDTLVHAAIARGIYLGRNPFLDQTY 58
MK K+A L+L+ ++ + RK P G GGDT++H A+ RGIYLGRNPFLDQ Y
Sbjct: 5 MKRKKAQLLWLLFIAFIVNFSVIYGRKMPVGGN-GGDTIIHMAMIRGIYLGRNPFLDQHY 63
Query: 59 NVPPNWYPFLYHLIVAIFAKI--VGIEKSMLMLQAVFSLLMLLIMYWIAKNLWGETAGIF 116
NVPPNWYPFLYH ++A A++ + I M+ +F+L+M+ Y + + L + G+
Sbjct: 64 NVPPNWYPFLYHALIAFLARLTHISIWSLMIWTPLIFALIMVFAWYKLGEELDKDYGGLL 123
Query: 117 VLSLSLLLLPAHRYPNPKELAPI-LGMISL----YFSLRRKYYL--GGLFAGLSLWTHYA 169
SL+ L L + +PNPKEL PI L + L YF R +L GL GL +W+HY
Sbjct: 124 FGSLAFLALKSQLFPNPKELIPIFLPLFYLEYYRYFRDRENRHLLYSGLLLGLMMWSHYG 183
Query: 170 VAAPL----ITFFLVLAIKNRKYMISLALALLTFSPFIVNVILHAQFLLPHVEDIYRFWI 225
A P+ I + L+ +N K MI L+L FSPFIVNV+LH + + W+
Sbjct: 184 AALPVLAGTIAYALIELKRNPKLMIPPFLSLAVFSPFIVNVLLHIHPGSTMI--VEGKWL 241
Query: 226 TD-TLERKLSSLLPPLYLIPLIFLALLRMYKEKDENAMKLFLFISIIAGMRLFPEILKPF 284
+ + L + P + +P++ +A L + K E L + I + G+ + P I+
Sbjct: 242 SALSWSSALHRIASPSWTLPIVTIAFLSLRKRNLEFWNFLIVVIISMIGINVTPTIVYDL 301
Query: 285 -GIDLWSSRFIGLLPYSYVLLASYGVRSL-------NGEILNVMALTLIPVFASLNFW-- 334
G ++ SRF L Y+Y++L +G+ L +IL++ L+ ++ S +F
Sbjct: 302 GGPAVFPSRFGIPLSYTYLILCGFGIDFLIKALKIPRKQILSLTFSFLLIIYGSWSFIAC 361
Query: 335 -YSVINDPFIQASSVELNEYFPQEHFVDVAEWIVKNTARDDVIGAGEEMGMMINALTGRP 393
Y + + + +L + + V V+EWI +NT RD + I TGRP
Sbjct: 362 NYHNFSSKYTYKNFEDLAGNY-TKGLVKVSEWIRENTERDAYLIGYPYTLEWIAGFTGRP 420
Query: 394 IIATMYGHGNIFLNNTERRHELKLLFLGNCSEKIIVLQKYRVKYVIVDPLTE 445
++A YGHGN FL+ +RR +++ F N ++ +++KY +KY+I+DP T+
Sbjct: 421 VVAVSYGHGNPFLDMEQRRKDIEEFFT-NPEKREEIIKKYNIKYIILDPYTK 471
>pir||C69078 conserved hypothetical protein MTH1583 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|1272330|gb|AAC44810.1| (U51624) orf2
[Methanobacterium thermoautotrophicum]
>gi|2622706|gb|AAB86056.1| (AE000918) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 465
Score = 71.0 bits (171), Expect = 3e-11
Identities = 116/494 (23%), Positives = 207/494 (41%), Gaps = 66/494 (13%)
Query: 4 KRALFLIISWALIFLPYVLTRKSPPGYIIGGDTLVHAAIARGIYLGRN-PFLDQTYNVP- 61
KR +FLII AL L + D H A +Y+GR F D + P
Sbjct: 6 KRDVFLIILPALCAFALALIPTFRYTVPLTWDVYYHIHNAT-LYMGRGIVFWDPLTSAPH 64
Query: 62 --PNWYPFLYHLIVAIFAKIVGIEKSML--MLQAVFSLLMLLIMYWIAKNLWGETAGIF- 116
P +YP L+H+++ +KI G+ + +Q VF+ L+LL +++ L+G AG
Sbjct: 65 GRPLYYPPLFHIMLLFLSKITGLGFFTVSRFMQPVFAFLILLSFSYVSGKLYGPLAGFLT 124
Query: 117 -VLSLSLLLLPAHRYPNPKELAPILGMISLYFSLR------RKY-YLGGLFAGLSLWTHY 168
+ S L +P P+ LA I + +Y R R Y L GL GL L TH
Sbjct: 125 GMFLFSSLFFMRMMFPIPESLAMISIPLFVYGYYRSMECCSRLYPVLTGLLLGLMLMTHI 184
Query: 169 AVAAPLITFFLVLAIKNRKYMISLALALLTFSPFIVNVILHAQFLLPHV---------ED 219
A+ ++LA+ ++ L + P+ + +IL + LL V
Sbjct: 185 LSAS------IILAVVTLSTIV-LYIGKYDIRPWNLLIILGSGLLLASVWYAPLIVKYGF 237
Query: 220 IYRFWITDTL--ERKLSSLLPPLYLIPLIFLALLRMYKEKDENAMKLF-LFISIIAGMRL 276
++R T +L E ++ L L ++ L + +EK + M ++ +F+ + L
Sbjct: 238 VFRSPATSSLPLEGYITHLGVLLTILSLAGIVHAAGRREKKDVIMAVWTVFVLALTAAYL 297
Query: 277 FPEILKPFGIDLWSSRFIGLLPYSYVLLASY---GVRSLNGEILNVMALTLIPVFASLNF 333
G+ + S R + + L++ +R NG+ + LI ++
Sbjct: 298 L-------GLKVLSDRILYFALFPMATLSANLFNSIRINNGKWSFYAIILLISLYC---- 346
Query: 334 WYSVINDPFIQASSVELNEYFPQEHFVDVAEWIVKNTARDDVIGAGEEMGMMINALTGRP 393
I D + ASS++L + +D+AEW N V+ + + I A++G+P
Sbjct: 347 ----IYDGYSLASSIKLEV---SDSELDIAEWFRYNGDHATVVVSDYHIQPAIVAVSGQP 399
Query: 394 IIATMYGHGNIFLNNTERRHELKLLFLGNCSEKIIVLQKYRVKYVIVDPLTEAKNMSCVG 453
+ A Y G I N E+ ++ + + + + RV Y+I+D +
Sbjct: 400 VSAGGYAPGTIRSINVEK-------YISSFNYTKHDIMRDRVGYIILD---NEERTPPYS 449
Query: 454 KVIFRKGDVEIVKV 467
++++R D + +V
Sbjct: 450 RLVYRNRDFSVYRV 463
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.145 0.443
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173409764
Number of Sequences: 2977
Number of extensions: 7178854
Number of successful extensions: 21563
Number of sequences better than 1.0e-10: 5
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21540
Number of HSP's gapped (non-prelim): 5
length of query: 470
length of database: 189,106,746
effective HSP length: 51
effective length of query: 419
effective length of database: 158,583,909
effective search space: 66446657871
effective search space used: 66446657871
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 167 (69.5 bits)