BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1660 (PAB1660) DE:Hypothetical protein
(437 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75085 hypothetical protein PAB1660 - Pyrococcus abyssi (st... 858 0.0
pir||D71058 hypothetical protein PH1162 - Pyrococcus horikoshii ... 709 0.0
sp|Q57772|Y326_METJA HYPOTHETICAL PROTEIN MJ0326 >gi|2128002|pir... 466 e-130
pir||C72357 conserved hypothetical protein - Thermotoga maritima... 395 e-109
pir||B82096 conserved hypothetical protein VC2278 [imported] - V... 378 e-104
dbj|BAA88496.1| (AB023289) hypothetical protein [Pseudomonas flu... 376 e-103
pir||A83057 probable transporter PA4719 [imported] - Pseudomonas... 372 e-102
pir||A75615 conserved hypothetical protein - Deinococcus radiodu... 370 e-101
pir||B83456 probable transporter PA1519 [imported] - Pseudomonas... 366 e-100
pir||F81199 conserved hypothetical protein NMB0428 [imported] - ... 358 6e-98
pir||D81776 conserved hypothetical protein NMA2056 [imported] - ... 358 1e-97
gb|AAA62065.1| (L10328) f445 [Escherichia coli] 356 4e-97
sp|P31466|YIEG_ECOLI HYPOTHETICAL 46.9 KD PROTEIN IN TNAB-BGLB I... 356 4e-97
pir||F69791 conserved hypothetical protein yebB - Bacillus subti... 342 4e-93
dbj|BAB04327.1| (AP001509) unknown conserved protein [Bacillus h... 342 5e-93
gi|11497023 conserved hypothetical protein [Borrelia burgdorferi... 339 5e-92
sp|P31440|YICO_ECOLI HYPOTHETICAL 49.9 KD PROTEIN IN NLPA-UHPT I... 331 9e-90
gi|11497022 conserved hypothetical protein [Borrelia burgdorferi... 331 1e-89
gb|AAG20256.1| (AE005100) Vng2116c [Halobacterium sp. NRC-1] 330 2e-89
gb|AAA62016.1| (L10328) f470 [Escherichia coli] 328 8e-89
pir||G64666 conserved hypothetical integral membrane protein HP1... 314 2e-84
pir||B71850 hypothetical protein jhp1102 - Helicobacter pylori (... 313 2e-84
pir||G69993 conserved hypothetical protein ytiP - Bacillus subti... 305 6e-82
pir||F81281 probable transmembrane transport protein Cj1369 [imp... 304 1e-81
emb|CAB93408.1| (AL357524) putative integral membrane protein [S... 286 3e-76
pir||T35480 hypothetical protein SC6C5.09 SC6C5.09 - Streptomyce... 279 6e-74
sp|P44530|YJCD_HAEIN HYPOTHETICAL PROTEIN HI0125 >gi|1074272|pir... 269 5e-71
sp|P32702|YJCD_ECOLI HYPOTHETICAL 45.7 KD PROTEIN IN SOXR-ACS IN... 263 4e-69
dbj|BAB05749.1| (AP001514) unknown conserved protein [Bacillus h... 256 4e-67
emb|CAA06848.1| (AJ006085) hypothetical membrane protein [Shewan... 233 3e-60
gb|AAF01525.1|AC009991_21 (AC009991) hypothetical protein [Arabi... 231 2e-59
pir||T40742 hypothetical integral membrane protein - fission yea... 221 1e-56
dbj|BAB09401.1| (AB024031) transmembrane transport protein-like ... 212 7e-54
sp|Q46818|YGFR_ECOLI HYPOTHETICAL 28.4 KD PROTEIN IN KDUI-LYSS I... 155 1e-36
sp|Q46817|YGFQ_ECOLI HYPOTHETICAL 19.7 KD PROTEIN IN KDUI-LYSS I... 109 5e-23
>pir||C75085 hypothetical protein PAB1660 - Pyrococcus abyssi (strain Orsay)
>gi|5458496|emb|CAB49984.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 437
Score = 858 bits (2192), Expect = 0.0
Identities = 437/437 (100%), Positives = 437/437 (100%)
Query: 1 MGWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTAL 60
MGWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTAL
Sbjct: 1 MGWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTAL 60
Query: 61 SAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYGWKVALAAVFVEGIIFIILSVTK 120
SAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYGWKVALAAVFVEGIIFIILSVTK
Sbjct: 61 SAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYGWKVALAAVFVEGIIFIILSVTK 120
Query: 121 VRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFIL 180
VRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFIL
Sbjct: 121 VRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFIL 180
Query: 181 GLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLLN 240
GLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLLN
Sbjct: 181 GLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLLN 240
Query: 241 AGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLGT 300
AGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLGT
Sbjct: 241 AGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLGT 300
Query: 301 STVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYYM 360
STVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYYM
Sbjct: 301 STVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYYM 360
Query: 361 MSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLMY 420
MSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLMY
Sbjct: 361 MSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLMY 420
Query: 421 ILALVFVGYFAYLAGVF 437
ILALVFVGYFAYLAGVF
Sbjct: 421 ILALVFVGYFAYLAGVF 437
>pir||D71058 hypothetical protein PH1162 - Pyrococcus horikoshii
>gi|3257579|dbj|BAA30262.1| (AP000005) 443aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 443
Score = 709 bits (1811), Expect = 0.0
Identities = 356/443 (80%), Positives = 393/443 (88%), Gaps = 6/443 (1%)
Query: 1 MGWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTAL 60
MGW ERYFE +KYGT++KTEVLAG+TTFMTMAYIL VNP ILS AMG+ A ++LVA TAL
Sbjct: 1 MGWAERYFELDKYGTDVKTEVLAGLTTFMTMAYILLVNPIILSSAMGKEAFDSLVAATAL 60
Query: 61 SAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYGWKVALAAVFVEGIIFIILSVTK 120
SAGLTTI+MGLYAKKPFALAPGMGLNAYFA+TVAPKYGWKVALAAVFVEGIIFIILSVTK
Sbjct: 61 SAGLTTILMGLYAKKPFALAPGMGLNAYFAYTVAPKYGWKVALAAVFVEGIIFIILSVTK 120
Query: 121 VRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPT------ILALNASKFVTKD 174
VRSAIIHAIP+SQKYA+GAGIGLFLT IGL +VG++T + LNA T
Sbjct: 121 VRSAIIHAIPLSQKYAVGAGIGLFLTFIGLNDVGLLTGVTSKEGILQFTGLNAKFLATAQ 180
Query: 175 GLLFILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLD 234
GLLF+ GL +A IL+ LRIKGALLISIL TSI+GWI AP P + S P +SYTFLKLD
Sbjct: 181 GLLFVFGLLLAGILIGLRIKGALLISILTTSIIGWIFNVAPRPEGVVSLPTLSYTFLKLD 240
Query: 235 FQGLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTL 294
GLLNAGALGV+FAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDA+GTTL
Sbjct: 241 LHGLLNAGALGVIFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAIGTTL 300
Query: 295 GALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALV 354
GALLGTSTVTTYIESAAGIEEGGRTG+TAL TGLL L +GLFI P+A +IP+FATAPALV
Sbjct: 301 GALLGTSTVTTYIESAAGIEEGGRTGLTALTTGLLLLAVGLFIAPIAKAIPSFATAPALV 360
Query: 355 IVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKE 414
IVGYYM+SA++ VDF+DPTEA+PAFLVLITIP+TYSIADGIGVGFISYTL+K+FTGRWKE
Sbjct: 361 IVGYYMISAIREVDFSDPTEAIPAFLVLITIPFTYSIADGIGVGFISYTLIKVFTGRWKE 420
Query: 415 VHPLMYILALVFVGYFAYLAGVF 437
VHPLMYILAL+FVGYFAYLAGVF
Sbjct: 421 VHPLMYILALIFVGYFAYLAGVF 443
>sp|Q57772|Y326_METJA HYPOTHETICAL PROTEIN MJ0326 >gi|2128002|pir||F64340 hypothetical
protein homolog MJ0326 - Methanococcus jannaschii
>gi|1591045|gb|AAB98314.1| (U67487) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 436
Score = 466 bits (1186), Expect = e-130
Identities = 238/439 (54%), Positives = 321/439 (72%), Gaps = 9/439 (2%)
Query: 1 MGWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKA-MGEGAKEALVAVTA 59
M + E+YFEFEKYGTN+K E LAGITTFMTMAYI+FVNP ILS A M GA ++ T
Sbjct: 3 MKFVEKYFEFEKYGTNLKVETLAGITTFMTMAYIIFVNPQILSTAGMDFGA---VMVATC 59
Query: 60 LSAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILS 117
+++ + T++MGLYA+ PFALAPGMGLNAYF + V G W+VAL AVF+ G++FIIL+
Sbjct: 60 IASAIATLVMGLYARYPFALAPGMGLNAYFTYGVCLGMGIDWRVALGAVFISGVLFIILT 119
Query: 118 VTKVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLL 177
+TK+R+ I + IP + KY GIGLF+ IGL + GI+ + L + + LL
Sbjct: 120 LTKIRTWIFNVIPNAIKYGTAVGIGLFIAFIGLKSAGIIVSSKATL-VTLGNLMEPSTLL 178
Query: 178 FILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWP-DISYTFLKLDFQ 236
+ G+F+ +ILVS + GA+LI I++TS++G I+ +P+P IFS P I+ TFL+LD
Sbjct: 179 ALFGIFLTSILVSRNVIGAILIGIIVTSLIGMILGISPFPEGIFSMPPSIAPTFLQLDIM 238
Query: 237 GLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGA 296
G LN G L +V AFF VD FDTLGT++ L+++AG+L K+GK+P EK L+ DA GT +G+
Sbjct: 239 GALNLGLLTIVLAFFFVDMFDTLGTLSALASQAGYLDKDGKLPRVEKALMADATGTVVGS 298
Query: 297 LLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIV 356
LLGTSTVTTYIESA+GI GGRTG ++V +LFL + LF P+ +IP +ATA ALVIV
Sbjct: 299 LLGTSTVTTYIESASGIALGGRTGFVSVVVAMLFL-LSLFFYPVVKAIPPYATAAALVIV 357
Query: 357 GYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVH 416
G MM ++K +DF+D TEA+PAF+ L+TIP T+SIA G+ +GFI+Y +LK+FTGRWKEVH
Sbjct: 358 GALMMRSVKYIDFDDYTEAIPAFITLLTIPLTFSIATGLALGFITYPILKVFTGRWKEVH 417
Query: 417 PLMYILALVFVGYFAYLAG 435
L+Y+LA++F F YL+G
Sbjct: 418 WLVYVLAVIFALRFVYLSG 436
>pir||C72357 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981113|gb|AAD35679.1|AE001734_6 (AE001734)
conserved hypothetical protein [Thermotoga maritima]
Length = 461
Score = 395 bits (1005), Expect = e-109
Identities = 217/438 (49%), Positives = 287/438 (64%), Gaps = 15/438 (3%)
Query: 8 FEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKE--------ALVAVTA 59
F ++ GTN+KTE+ AGI TF+TMAYI+FVNP IL +A+G A A + T
Sbjct: 25 FRLKENGTNVKTEIFAGIATFLTMAYIVFVNPSILVQAVGVDASSPLYQQFFGAFMVATI 84
Query: 60 LSAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILS 117
L + T++M +A PFALAPGMGLNAYF +TV G W+VALAAVFVEG+IFI L+
Sbjct: 85 LGSATATLVMAFFANYPFALAPGMGLNAYFTYTVCLGMGIDWRVALAAVFVEGLIFIGLT 144
Query: 118 VTKVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLL 177
+ R + IP S K AI AGIG F+ IGL + GIV + P ++ L+
Sbjct: 145 LVGFRKFVAGIIPESIKVAISAGIGFFIAFIGLRSAGIVVSNPAT-SVTLGDLTNPGVLV 203
Query: 178 FILGLFVAAILVSLRIKGALLISILLTSIVGWI--VKAAPWPSQIFSWPDISYTFLKLDF 235
++GL V L +I GA++I IL+ ++VG I + + + PDIS TF+KLDF
Sbjct: 204 TVVGLLVIVALYHRKIPGAVMIGILVATLVGAIPGIGVTKYQGIVGPVPDISPTFMKLDF 263
Query: 236 QGLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLG 295
G L+ VV FF VDFFDTLGT+TGL+ AGF+ K G++P A + L DA+GT++G
Sbjct: 264 SGFLSLDFWIVVLTFFFVDFFDTLGTITGLAQSAGFM-KNGELPRANRAFLADAIGTSVG 322
Query: 296 ALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVI 355
AL GTSTVTTYIES AGI EGGRTG+TALV L L + LF PLA ++P +ATAPAL+
Sbjct: 323 ALFGTSTVTTYIESGAGIAEGGRTGLTALVVALCMLAM-LFFAPLAQTVPGYATAPALIF 381
Query: 356 VGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEV 415
VG M+ + V ++D TEALPAF+ +IT+P TYSIA+GI +G ISY L+K+F+G+ KEV
Sbjct: 382 VGALMIGNLGRVKWDDITEALPAFITVITMPLTYSIANGIALGIISYALVKLFSGKSKEV 441
Query: 416 HPLMYILALVFVGYFAYL 433
H +ILAL F + ++
Sbjct: 442 HWFTWILALAFALWLLFI 459
>pir||B82096 conserved hypothetical protein VC2278 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9656841|gb|AAF95422.1|
(AE004299) conserved hypothetical protein [Vibrio
cholerae]
Length = 430
Score = 378 bits (960), Expect = e-104
Identities = 200/427 (46%), Positives = 284/427 (65%), Gaps = 10/427 (2%)
Query: 5 ERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKA-MGEGAKEALVAVTALSAG 63
E+ F+ +YGTN++TE+LAG+TTF+TMAYI+FVNP ILS A M GA + T L+A
Sbjct: 3 EKLFKLSEYGTNVRTEILAGVTTFLTMAYIIFVNPAILSDAGMDRGA---VFVATCLAAA 59
Query: 64 LTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVTKV 121
+ +MG A P A APGMGLNA+F + V G W+VALAAVF G++FI+LS+ K+
Sbjct: 60 IGCFIMGFIANYPIAQAPGMGLNAFFTYGVVLGMGHTWQVALAAVFCSGVLFILLSLFKI 119
Query: 122 RSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGP-TILALNASKFVTKDGLLFIL 180
R II++IP S + I AGIGLFL I L N GIV + P T+++L A + +L +
Sbjct: 120 REWIINSIPHSLRTGISAGIGLFLAFIALKNAGIVVDNPATLVSLGA--ITSLHAVLAAV 177
Query: 181 GLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLLN 240
G F+ LV +KGA++I+IL + +G + W + + P I+ TF++LDF +
Sbjct: 178 GFFLTIGLVYRGVKGAVMIAILAVTALGLVFGDVQWGGIMSTPPSIAPTFMQLDFSAVFE 237
Query: 241 AGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLGT 300
G + VVFAF VD FDT GT+ G++ KAG + K+GKIP + LL D+ T++GALLGT
Sbjct: 238 IGMISVVFAFLFVDLFDTAGTLVGVATKAGLIEKDGKIPRLNRALLADSTATSVGALLGT 297
Query: 301 STVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYYM 360
S T+YIES +G+ GGRTG+TA+V G+LFL + LF PLAG IPA+ATA AL V M
Sbjct: 298 SNTTSYIESVSGVAVGGRTGLTAVVVGILFL-LALFFSPLAGMIPAYATAGALFYVAILM 356
Query: 361 MSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLMY 420
MS + ++D+ D TEA P + + +P T+SIA+GI +GFI+Y +K+F+G+ + V ++
Sbjct: 357 MSGLVSIDWRDLTEAAPTVVTCLMMPLTFSIAEGISLGFIAYAAIKLFSGKGRSVSLSVW 416
Query: 421 ILALVFV 427
++A +FV
Sbjct: 417 VMAAIFV 423
>dbj|BAA88496.1| (AB023289) hypothetical protein [Pseudomonas fluorescens]
Length = 431
Score = 376 bits (955), Expect = e-103
Identities = 193/426 (45%), Positives = 288/426 (67%), Gaps = 8/426 (1%)
Query: 5 ERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALSAGL 64
E+ F+ + + TN++TE+LAG+TTF+ MAYILFVNP IL + + K A+ T L+A +
Sbjct: 3 EKLFQLKAHNTNVRTEILAGVTTFLAMAYILFVNPSILGETGMD--KGAVFVATCLAAAI 60
Query: 65 TTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVTKVR 122
+ +MGL A P ALAPGMGLNA+F +TV G W+VAL AVF+ ++F +LS+ ++R
Sbjct: 61 GSTVMGLIANYPIALAPGMGLNAFFTYTVVLHMGHTWQVALGAVFISAVLFFLLSIFRIR 120
Query: 123 SAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGP-TILALNASKFVTKDGLLFILG 181
II++IP+ + AI AGIGLFL LI L N GIV + P T++ L K +L LG
Sbjct: 121 EWIINSIPLPLRSAIAAGIGLFLALIALHNAGIVVSNPATMVGLGDLKQPAP--ILATLG 178
Query: 182 LFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLLNA 241
+ L +L+++GA+LI IL+ +IV ++ P+ + P ++ TFL+LD +G L+
Sbjct: 179 FALIVALEALKVRGAVLIGILVVTIVSIVLGFTPFGGVMSMPPSLAPTFLQLDIKGALDI 238
Query: 242 GALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLGTS 301
G + V+FAF +VD FD GT+ G++ +AG + K+G +P + L+ D+ G+LLGTS
Sbjct: 239 GLVSVIFAFLLVDLFDNSGTLIGVAKRAGLMGKDGHMPKMGRALIADSTAAMAGSLLGTS 298
Query: 302 TVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYYMM 361
T T+YIESAAG+ GGRTG+TA+V +LFL + LF PLA S+PAFATAPAL+ V M
Sbjct: 299 TTTSYIESAAGVSAGGRTGLTAVVVAILFL-LALFFSPLAASVPAFATAPALLFVAVLMT 357
Query: 362 SAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLMYI 421
S + +D++D T A P + + +P+TYSIA+GI GFI++T +K+ +GR++E++P + I
Sbjct: 358 SGLAEIDWDDITVAAPVVITALAMPFTYSIANGIAFGFIAWTAIKLLSGRYRELNPALVI 417
Query: 422 LALVFV 427
L+++FV
Sbjct: 418 LSILFV 423
>pir||A83057 probable transporter PA4719 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950978|gb|AAG08105.1|AE004885_10
(AE004885) probable transporter [Pseudomonas aeruginosa]
Length = 431
Score = 372 bits (945), Expect = e-102
Identities = 193/431 (44%), Positives = 280/431 (64%), Gaps = 9/431 (2%)
Query: 5 ERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALSAGL 64
E+ F+ + + T ++TE+LAGITTF+TMAYILFVNP IL + + K A+ T L+A +
Sbjct: 3 EKLFQLKAHNTTVRTEILAGITTFLTMAYILFVNPSILGETGMD--KGAVFVATCLAAAI 60
Query: 65 TTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVTKVR 122
+ +MGL A P ALAPGMGLNA+F +TV G W+VAL AVF+ +F +LS+ ++R
Sbjct: 61 GSTIMGLIANYPIALAPGMGLNAFFTYTVVLHMGHSWQVALGAVFISATMFFLLSIFRIR 120
Query: 123 SAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFILGL 182
II++IP+ + AI AGIGLFL LI L N GIV + P L + +L LG
Sbjct: 121 EWIINSIPLPLRSAIAAGIGLFLALIALQNAGIVVDNPATL-IGMGDLTKPAPILATLGF 179
Query: 183 FVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLLNAG 242
+ L + + GA+LI IL+ + + ++ + + P ++ TFL+LD +G L+ G
Sbjct: 180 ILIVALEARSVTGAVLIGILVVTAIAILLGVTQFGGVVSMPPSLAPTFLQLDIKGALDIG 239
Query: 243 ALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLGTST 302
+ V+FAF VD FD GT+ G++ +AG + K+G +P + L+ D+ G+LLGTST
Sbjct: 240 LVSVIFAFLFVDLFDNSGTLIGVAKRAGLMGKDGHMPKMGRALIADSTAAMGGSLLGTST 299
Query: 303 VTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYYMMS 362
T+YIESAAG+ GGRTG+TA+V +LFL + LF PLAGS+PAFATAPAL+ V M S
Sbjct: 300 TTSYIESAAGVSAGGRTGLTAIVVAILFL-LALFFAPLAGSVPAFATAPALLFVAVLMAS 358
Query: 363 AMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLMYIL 422
+ +D+ D T A P + + +P+TYSIA GI GFIS+T +K+ +GRW+E++P + IL
Sbjct: 359 GLAEIDWEDITVAAPVVVTALAMPFTYSIATGIAFGFISWTAIKVLSGRWRELNPALVIL 418
Query: 423 ALVFV---GYF 430
+++FV G+F
Sbjct: 419 SVLFVIKLGFF 429
>pir||A75615 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6460484|gb|AAF12190.1|AE001862_16 (AE001862)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 464
Score = 370 bits (939), Expect = e-101
Identities = 203/450 (45%), Positives = 281/450 (62%), Gaps = 23/450 (5%)
Query: 5 ERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMG-EGAKEALVAVTALSAG 63
+R+F G+ + E+ AG+TTF+TM+YILFVNP +LS A+ GA L+ TA++A
Sbjct: 15 DRFFGLTTSGSTVPRELRAGLTTFLTMSYILFVNPQVLSAAIPVPGAFAQLLTTTAIAAA 74
Query: 64 LTTIMMGLYAKKPFALAPGMGLNAYFAFTVA--PKYGWKVALAAVFVEGIIFIILSVTKV 121
+++MGL AK P+A APGMGLNA+FAFTV K W+ AL AVF+ G++F++LS+
Sbjct: 75 FGSLVMGLIAKYPYAQAPGMGLNAFFAFTVVLGMKVPWQTALGAVFISGVLFVLLSLLGA 134
Query: 122 RSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFILG 181
R AI+ AIP K+AI AGIG FL +GL + GIV P + L +LG
Sbjct: 135 RQAIVQAIPRGLKFAITAGIGTFLAFLGLKSAGIVVTNPATF-VGLGSLTAPGAWLALLG 193
Query: 182 LFVAAILVSLRIKGALLISILLTSIVGWIVK----AAPWPSQIFSWPDISYTFL------ 231
L V A L+ R+ GA+L ILLTS +++ A + ++P + L
Sbjct: 194 LVVTAGLMVRRVTGAILWGILLTSAAAIVLRLPVFAGGAEGALQAFPGFQGSLLGIFGAP 253
Query: 232 --------KLDFQGLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEK 283
+LD G L G L VVF FF VDFFD GT+TGLS KAGFL + G +P A +
Sbjct: 254 VWPVDLVGQLDIGGALGLGLLNVVFTFFFVDFFDATGTLTGLSQKAGFLDEHGNMPRARR 313
Query: 284 VLLTDAVGTTLGALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGS 343
+ D + GA +GTST T Y+ESA+GI EGGRTG+TA+ G+LFL + + PLA +
Sbjct: 314 LFAMDGLAAMFGAFMGTSTTTAYVESASGIGEGGRTGLTAVTVGVLFL-FAMLLWPLAAA 372
Query: 344 IPAFATAPALVIVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYT 403
IPA ATAPAL++VG MM +K +D++D TE+LPAFL +I +P T+SIA+G+ +G ISY
Sbjct: 373 IPAAATAPALILVGALMMEGIKQIDWDDLTESLPAFLTIIMMPLTFSIANGVSLGVISYC 432
Query: 404 LLKIFTGRWKEVHPLMYILALVFVGYFAYL 433
L+K+ GR +EV PL+Y L L+ + + +L
Sbjct: 433 LIKLIGGRGREVSPLLYGLGLLLLARYLWL 462
>pir||B83456 probable transporter PA1519 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9947476|gb|AAG04908.1|AE004580_8
(AE004580) probable transporter [Pseudomonas aeruginosa]
Length = 449
Score = 366 bits (929), Expect = e-100
Identities = 188/434 (43%), Positives = 280/434 (64%), Gaps = 6/434 (1%)
Query: 2 GWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALS 61
G ER F+ ++GT ++TE+ AG+TTF+TMAYI+FVNP+I++ A G A VA T L+
Sbjct: 20 GLLERLFKLRQHGTTVRTELAAGLTTFITMAYIIFVNPNIMADA-GIDHGAAFVA-TCLA 77
Query: 62 AGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPK--YGWKVALAAVFVEGIIFIILSVT 119
A L +MGLYA P LAPGMGLNA+F +TV Y W++AL AVF+ G++F++L+ +
Sbjct: 78 AALGCFLMGLYANWPVGLAPGMGLNAFFTYTVVGTMGYSWQIALGAVFISGVMFMLLTFS 137
Query: 120 KVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFI 179
+VR ++++IP S ++A+GAG+GLFL LIGL GIV P L + + LL
Sbjct: 138 RVREWLLNSIPRSLRFAMGAGVGLFLGLIGLKTAGIVVASPATL-IKLGHLTSPGPLLAA 196
Query: 180 LGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLL 239
L + A+L R+ G +LISIL ++VGW + + + P ++ TFL +D G
Sbjct: 197 LCFLMIAVLEYRRVFGGILISILSVTLVGWALGLVQYGGVFSAPPSLAPTFLAMDIAGAF 256
Query: 240 NAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLG 299
N + V+ AF V FDT GT+ G++ +A + ++G+I + K + D+ + G +LG
Sbjct: 257 NVTMISVILAFLFVHMFDTAGTLMGVAQRAHLVKEDGRIENLSKAMKADSASSVFGGMLG 316
Query: 300 TSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYY 359
VT+Y+ESAAG+ GGRTG+TA+V G+LF V +F PLAG IPAFATA AL+ V
Sbjct: 317 VPPVTSYVESAAGVAAGGRTGLTAVVVGVLF-VAAMFFAPLAGMIPAFATAGALIYVAML 375
Query: 360 MMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLM 419
MM M ++D+++ TE +PA + +I +P T+S+ADGI +GFI+Y +K+ TG+ +EV +
Sbjct: 376 MMGGMAHIDWDEHTETIPAIVTVIMMPLTFSVADGIALGFITYVAMKVLTGKHREVSASL 435
Query: 420 YILALVFVGYFAYL 433
Y L ++FV F +L
Sbjct: 436 YALFVIFVAKFIFL 449
>pir||F81199 conserved hypothetical protein NMB0428 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225652|gb|AAF40866.1| (AE002399) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 436
Score = 358 bits (910), Expect = 6e-98
Identities = 187/429 (43%), Positives = 277/429 (63%), Gaps = 9/429 (2%)
Query: 8 FEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKA-MGEGAKEALVAVTALSAGLTT 66
F+ + GT ++TE++AG+TTF+TM YI+ VNP IL + M GA + T +++ +
Sbjct: 13 FKLKANGTTVRTELMAGLTTFLTMCYIVIVNPLILGETGMDMGA---VFVATCIASAIGC 69
Query: 67 IMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVTKVRSA 124
+MG P ALAPGMGLNAYF F V G W+VAL AVF+ G+IFI+ S KVR
Sbjct: 70 FVMGFVGNYPIALAPGMGLNAYFTFAVVKGMGVPWQVALGAVFISGLIFILFSFFKVREM 129
Query: 125 IIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFILGLFV 184
+++A+P+ K +I AGIGLFL LI L GI+ P L + LL + G +
Sbjct: 130 LVNALPMGLKMSIAAGIGLFLALISLKGAGIIVANPATL-VGLGDIHQPSALLALFGFAM 188
Query: 185 AAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLLNAGAL 244
+L R++GA++I+IL +++ ++ + I P I+ TF+++DF+GL +
Sbjct: 189 VVVLGHFRVQGAIIITILTITVIASLMGLNEFHGIIGEVPSIAPTFMQMDFEGLFTVSMV 248
Query: 245 GVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLGTSTVT 304
V+F FF+VD FD+ GT+ G+S +AG L +GK+P ++ LL D+ GA LGTS+ T
Sbjct: 249 SVIFVFFLVDLFDSTGTLVGISHRAGLLV-DGKLPRLKRALLADSTAIVAGAALGTSSTT 307
Query: 305 TYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYYMMSAM 364
Y+ESAAG+ GGRTG+TA+ G+L L +F PLA S+PAFATAPAL+ VG M+ +
Sbjct: 308 PYVESAAGVSAGGRTGLTAVTVGVLMLACLMF-SPLAKSVPAFATAPALLYVGTQMLRSA 366
Query: 365 KNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLMYILAL 424
+++D++D TEA PAFL ++ +P+TYSIADGI GFISY ++K+ R K+V P+++I+A+
Sbjct: 367 RDIDWDDMTEAAPAFLTIVFMPFTYSIADGIAFGFISYAVVKLLCRRTKDVPPMVWIVAV 426
Query: 425 VFVGYFAYL 433
++ F YL
Sbjct: 427 LWALKFWYL 435
>pir||D81776 conserved hypothetical protein NMA2056 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380684|emb|CAB85274.1| (AL162758) conserved
hypothetical protein [Neisseria meningitidis Z2491]
Length = 436
Score = 358 bits (908), Expect = 1e-97
Identities = 187/429 (43%), Positives = 277/429 (63%), Gaps = 9/429 (2%)
Query: 8 FEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKA-MGEGAKEALVAVTALSAGLTT 66
F+ + GT ++TE++AG+TTF+TM YI+ VNP IL + M GA + T +++ +
Sbjct: 13 FKLKANGTTVRTELMAGLTTFLTMCYIVIVNPLILGETGMDMGA---VFVATCIASAIGC 69
Query: 67 IMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVTKVRSA 124
+MG P ALAPGMGLNAYF F V G W+VAL AVF+ G+IFI+ S KVR
Sbjct: 70 FVMGFVGNYPIALAPGMGLNAYFTFAVVKGMGVPWQVALGAVFISGLIFILFSFFKVREM 129
Query: 125 IIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFILGLFV 184
+++A+P+ K +I AGIGLFL LI L GI+ P L + LL + G +
Sbjct: 130 LVNALPMGLKMSIAAGIGLFLALISLKGAGIIVANPATL-VGLGDIHQPSALLALFGFAM 188
Query: 185 AAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLLNAGAL 244
+L R++GA++I+IL +++ ++ + I P I+ TF+++DF+GL +
Sbjct: 189 VVVLGHFRVQGAIIITILTITVIASLMGLNEFHGIIGEVPSIAPTFMQMDFKGLFTVSMV 248
Query: 245 GVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLGTSTVT 304
V+F FF+VD FD+ GT+ G+S +AG L +GK+P ++ LL D+ GA LGTS+ T
Sbjct: 249 SVIFVFFLVDLFDSTGTLVGVSHRAGLLV-DGKLPRLKRALLADSTAIVAGAALGTSSTT 307
Query: 305 TYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYYMMSAM 364
Y+ESAAG+ GGRTG+TA+ G+L L +F PLA S+PAFATAPAL+ VG M+ +
Sbjct: 308 PYVESAAGVSAGGRTGLTAVTVGVLMLACLMF-SPLAKSVPAFATAPALLYVGTQMLRSA 366
Query: 365 KNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLMYILAL 424
+++D++D TEA PAFL ++ +P+TYSIADGI GFISY ++K+ R K+V P+++I+A+
Sbjct: 367 RDIDWDDMTEAAPAFLTIVFMPFTYSIADGIAFGFISYAVVKLLCRRTKDVPPMVWIVAV 426
Query: 425 VFVGYFAYL 433
++ F YL
Sbjct: 427 LWALKFWYL 435
>gb|AAA62065.1| (L10328) f445 [Escherichia coli]
Length = 445
Score = 356 bits (903), Expect = 4e-97
Identities = 180/428 (42%), Positives = 281/428 (65%), Gaps = 6/428 (1%)
Query: 2 GWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALS 61
G ER F+ ++GT +TEV+AG TTF+TM YI+FVNP IL A + + A+ T L
Sbjct: 13 GMLERVFKLREHGTTARTEVIAGFTTFLTMVYIVFVNPQILGVAGMDTS--AVFVTTCLI 70
Query: 62 AGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVT 119
A +IMMGL+A P ALAP MGLNA+FAF V G W+V + A+F I ++L++
Sbjct: 71 AAFGSIMMGLFANLPVALAPAMGLNAFFAFVVVQAMGLPWQVGMGAIFWGAIGLLLLTIF 130
Query: 120 KVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFI 179
+VR +I IP+S + I +GIGLF+ ++GL N G++ P L ++ + LL I
Sbjct: 131 RVRYWMIANIPVSLRVGITSGIGLFIGMMGLKNAGVIVANPETL-VSIGNLTSHSVLLGI 189
Query: 180 LGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLL 239
LG F+ AIL S I A+L+SI++T+++GW++ + + + P + +D G
Sbjct: 190 LGFFIIAILASRNIHAAVLVSIVVTTLLGWMLGDVHYNGIVSAPPSVMTVVGHVDLAGSF 249
Query: 240 NAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLG 299
N G GV+F+F +V+ FD+ GT+ G++ KAG ++GK P ++ L D++ + G+ +G
Sbjct: 250 NLGLAGVIFSFMLVNLFDSSGTLIGVTDKAGLADEKGKFPRMKQALYVDSISSVTGSFIG 309
Query: 300 TSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYY 359
TS+VT YIES++G+ GGRTG+TA+V GLLFL++ +F+ PLAG +P +A A AL+ VG
Sbjct: 310 TSSVTAYIESSSGVSVGGRTGLTAVVVGLLFLLV-IFLSPLAGMVPXYAAAGALIYVGVL 368
Query: 360 MMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLM 419
M S++ V++ D TE++PAF+ + +P+++SI +GI +GFISY ++KI TGR +++ P +
Sbjct: 369 MTSSLARVNWQDLTESVPAFITAVMMPFSFSITEGIALGFISYCVMKIGTGRLRDLSPCV 428
Query: 420 YILALVFV 427
I+AL+F+
Sbjct: 429 IIVALLFI 436
>sp|P31466|YIEG_ECOLI HYPOTHETICAL 46.9 KD PROTEIN IN TNAB-BGLB INTERGENIC REGION
>gi|7446801|pir||C65174 hypothetical 46.9 kD protein in
tnaB-bglB intergenic region - Escherichia coli (strain
K-12) >gi|1790150|gb|AAC76737.1| (AE000448) putative
membrane / transport protein [Escherichia coli K12]
Length = 445
Score = 356 bits (903), Expect = 4e-97
Identities = 180/428 (42%), Positives = 281/428 (65%), Gaps = 6/428 (1%)
Query: 2 GWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALS 61
G ER F+ ++GT +TEV+AG TTF+TM YI+FVNP IL A + + A+ T L
Sbjct: 13 GMLERVFKLREHGTTARTEVIAGFTTFLTMVYIVFVNPQILGVAGMDTS--AVFVTTCLI 70
Query: 62 AGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVT 119
A +IMMGL+A P ALAP MGLNA+FAF V G W+V + A+F I ++L++
Sbjct: 71 AAFGSIMMGLFANLPVALAPAMGLNAFFAFVVVQAMGLPWQVGMGAIFWGAIGLLLLTIF 130
Query: 120 KVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFI 179
+VR +I IP+S + I +GIGLF+ ++GL N G++ P L ++ + LL I
Sbjct: 131 RVRYWMIANIPVSLRVGITSGIGLFIGMMGLKNAGVIVANPETL-VSIGNLTSHSVLLGI 189
Query: 180 LGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGLL 239
LG F+ AIL S I A+L+SI++T+++GW++ + + + P + +D G
Sbjct: 190 LGFFIIAILASRNIHAAVLVSIVVTTLLGWMLGDVHYNGIVSAPPSVMTVVGHVDLAGSF 249
Query: 240 NAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLG 299
N G GV+F+F +V+ FD+ GT+ G++ KAG ++GK P ++ L D++ + G+ +G
Sbjct: 250 NLGLAGVIFSFMLVNLFDSSGTLIGVTDKAGLADEKGKFPRMKQALYVDSISSVTGSFIG 309
Query: 300 TSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYY 359
TS+VT YIES++G+ GGRTG+TA+V GLLFL++ +F+ PLAG +P +A A AL+ VG
Sbjct: 310 TSSVTAYIESSSGVSVGGRTGLTAVVVGLLFLLV-IFLSPLAGMVPGYAAAGALIYVGVL 368
Query: 360 MMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPLM 419
M S++ V++ D TE++PAF+ + +P+++SI +GI +GFISY ++KI TGR +++ P +
Sbjct: 369 MTSSLARVNWQDLTESVPAFITAVMMPFSFSITEGIALGFISYCVMKIGTGRLRDLSPCV 428
Query: 420 YILALVFV 427
I+AL+F+
Sbjct: 429 IIVALLFI 436
>pir||F69791 conserved hypothetical protein yebB - Bacillus subtilis
>gi|2239289|gb|AAB62312.1| (U51115) unknown protein
[Bacillus subtilis] >gi|2632950|emb|CAB12456.1| (Z99107)
similar to hypothetical proteins [Bacillus subtilis]
Length = 440
Score = 342 bits (869), Expect = 4e-93
Identities = 189/439 (43%), Positives = 276/439 (62%), Gaps = 15/439 (3%)
Query: 7 YFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEAL-------VAVTA 59
+F+F++ GT+ + E++ G+TTF++MAYILFVNP L+ + EAL TA
Sbjct: 4 FFQFDELGTSYRNEIIGGLTTFLSMAYILFVNPITLALESVKDFPEALRIDQGAVFTATA 63
Query: 60 LSAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILS 117
L++ I+MGL A+ P A+APGMGLNA+FAF+V G W+ AL+ VF+ G+IF+ LS
Sbjct: 64 LASAAGCILMGLIARYPIAIAPGMGLNAFFAFSVVLGMGISWQAALSGVFISGLIFVALS 123
Query: 118 VTKVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLL 177
+T R II+AIP K A+GAGIGLF+T +GL GI+T P+ L + + LL
Sbjct: 124 LTGFREKIINAIPPELKLAVGAGIGLFITFVGLQGSGIITANPSTL-VTIGNIHSGPVLL 182
Query: 178 FILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIF-SWPDISYTFLK--LD 234
I G+ V IL+ LR+ + I +LLT++ G I P P+QI S P ++ TF + +
Sbjct: 183 TIFGVIVTVILMVLRVNAGVFIGMLLTAVAGMIFGLVPVPTQIIGSVPSLAPTFGQAWIH 242
Query: 235 FQGLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTL 294
+ + L V+ F V FFDT GT+ ++ +AG L KE K+P A + LL D+ +
Sbjct: 243 LPDIFSVQMLIVILTFLFVGFFDTAGTLVAVATQAG-LMKENKLPRAGRALLADSSSIVI 301
Query: 295 GALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALV 354
GA+LGTST T+Y+ES++G+ G R+G A+VTG+LFL + F PL + + TAPAL+
Sbjct: 302 GAVLGTSTTTSYVESSSGVAAGARSGFAAIVTGILFL-LATFFSPLLSVVTSNVTAPALI 360
Query: 355 IVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKE 414
IVG M++ + + ++ A+PAFL +I +P TYSIA GI +GFI Y + + G+ KE
Sbjct: 361 IVGALMVAPLGKIAWDKFEVAVPAFLTMIMMPLTYSIATGIAIGFIFYPITMVCKGKAKE 420
Query: 415 VHPLMYILALVFVGYFAYL 433
VHP+MY L +VF+ YF +L
Sbjct: 421 VHPIMYGLFVVFILYFIFL 439
>dbj|BAB04327.1| (AP001509) unknown conserved protein [Bacillus halodurans]
Length = 434
Score = 342 bits (868), Expect = 5e-93
Identities = 192/437 (43%), Positives = 274/437 (61%), Gaps = 12/437 (2%)
Query: 5 ERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALSAGL 64
+RYF F+++GT E +AG+TTF++MAYILFVNP IL A + +A+ TAL+A +
Sbjct: 2 DRYFGFKEHGTTYGRESIAGLTTFLSMAYILFVNPLILGDAGMD--VQAVFMATALAAAI 59
Query: 65 TTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVTKVR 122
T++MG+ AK P ALAPGMGLNA+FA++V G W++AL VFV GIIFI+++V K+R
Sbjct: 60 GTLIMGILAKYPIALAPGMGLNAFFAYSVVIGMGIDWQLALFGVFVSGIIFILITVFKIR 119
Query: 123 SAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFILGL 182
II+AIP K A AGIGLF+ IGL N GIV + A++ + LL GL
Sbjct: 120 EVIINAIPAELKNAAAAGIGLFIAFIGLKNAGIVVSDEAT-AVSLGHILNGPTLLACFGL 178
Query: 183 FVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQ--IFSWPDISYTF---LKLDFQG 237
V + + I+G + ++LT+IVG I + + + P ++ TF +
Sbjct: 179 IVTVLFMVRGIQGGIFYGMILTAIVGLISGIITYTGGGIVSTPPSLAPTFGQAFNIQMAD 238
Query: 238 LLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGAL 297
+ + L VV F VDFFDT GT+ G++ +AGF+ K+ K+P A K LL D+ T++GA+
Sbjct: 239 VFSVQFLIVVLTFLFVDFFDTAGTLYGVANQAGFI-KDNKLPRAGKALLADSSATSIGAI 297
Query: 298 LGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVG 357
LGTST T YIES+AG+ GGRTG ++VT LF V+ +F PL + TA AL++VG
Sbjct: 298 LGTSTTTAYIESSAGVAAGGRTGFASIVTAGLF-VLAMFFSPLLSVVTEQVTAAALIVVG 356
Query: 358 YYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHP 417
M S+++ +D+ A+P+FL ++ +P TYSIA GI GF+ Y + I GR KEVHP
Sbjct: 357 ILMASSLRFIDWTKLEIAIPSFLTVVAMPLTYSIATGIAFGFLFYPITMIVKGRGKEVHP 416
Query: 418 LMYILALVFVGYFAYLA 434
+MY L VF+ YF +L+
Sbjct: 417 IMYALFFVFLAYFIFLS 433
>gi|11497023 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7446804|pir||B70219 conserved hypothetical protein
BBB22 - Lyme disease spirochete plasmid B/cp26
>gi|2689890|gb|AAC66328.1| (AE000792) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 451
Score = 339 bits (859), Expect = 5e-92
Identities = 187/446 (41%), Positives = 271/446 (59%), Gaps = 25/446 (5%)
Query: 8 FEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKA-MGEGAKEALVAVTALSAGLTT 66
F+F+ + K E++ GITTF++MAYI+ VNP ILS M GA LV T L++ ++
Sbjct: 10 FQFKNKTIDYKKEIIGGITTFLSMAYIIAVNPAILSSTGMPIGA---LVTATCLTSAFSS 66
Query: 67 IMMGLYAKKPFALAPGMGLNAYFAFTVA--PKYGWKVALAAVFVEGIIFIILSVTKVRSA 124
I+MGLY P +LAPGMGLNA+FAF+V W+VALAAVF+EG+IFI+LS+++ R +
Sbjct: 67 ILMGLYTNTPISLAPGMGLNAFFAFSVVIGMNIPWQVALAAVFIEGLIFIVLSLSRARES 126
Query: 125 IIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFILGLFV 184
I ++IP++ KY+I GIGLF+ IG N GI+ L + F+ L LGLF
Sbjct: 127 IANSIPVNLKYSITVGIGLFIAFIGFVNGGIIVKNDATL-VGIGSFIDLKVLFTFLGLFF 185
Query: 185 AAILVSLRIKGALLISILLTSIVGWI----------VKAAPWPSQIFSWPDISYTFLKLD 234
I L I+G++L +I + + WI +P I + I F +LD
Sbjct: 186 IVIFEQLNIRGSILWAICSVTAIAWIYAIFSPESAVAAGIRFPDGILRFESIGPIFNQLD 245
Query: 235 FQGLLNA---GALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVG 291
F +L+ + +V D FDTLGT+ ++AK L K GKIP+ K+ L DA+
Sbjct: 246 FSYILSKHFWSFITIVLVLLFNDLFDTLGTLIAVAAKGNMLDKNGKIPNVGKIFLIDAIS 305
Query: 292 TTLGALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAP 351
TT+GA++G STVT YIES GIEEGG+TG+T +VTG++F I +F+ PL ++PA ATA
Sbjct: 306 TTVGAIMGVSTVTAYIESCTGIEEGGKTGLTTIVTGIMFF-IAIFLSPLFIAVPASATAA 364
Query: 352 ALVIVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTL----LKI 407
AL+ VG+ M + ++F++ E +P+FL+L IP TY+I+ GI +G I Y L L +
Sbjct: 365 ALIYVGFSMCREILKINFSNIRENIPSFLILFLIPLTYNISSGISIGIIFYVLINIILNL 424
Query: 408 FTGRWKEVHPLMYILALVFVGYFAYL 433
+ ++ P+M IL LVF+ F Y+
Sbjct: 425 LENKKNKISPVMIILCLVFIIKFIYI 450
>sp|P31440|YICO_ECOLI HYPOTHETICAL 49.9 KD PROTEIN IN NLPA-UHPT INTERGENIC REGION
>gi|7446802|pir||A65168 hypothetical 49.9 kD protein in
nlpa-uhpt intergenic region - Escherichia coli (strain
K-12) >gi|1790097|gb|AAC76687.1| (AE000444) orf,
hypothetical protein [Escherichia coli K12]
Length = 470
Score = 331 bits (840), Expect = 9e-90
Identities = 170/428 (39%), Positives = 270/428 (62%), Gaps = 8/428 (1%)
Query: 2 GWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALS 61
G R F+ ++GT ++TE++AG+TTF+TM YI+FVNP IL A + + + T L
Sbjct: 40 GTLSRLFKLPQHGTTVRTELIAGMTTFLTMVYIVFVNPQILGAAQMD--PKVVFVTTCLI 97
Query: 62 AGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVT 119
AG+ +I MG++A P ALAP MGLNA+FAF V G W+ + A+F + +L++
Sbjct: 98 AGIGSIAMGIFANLPVALAPAMGLNAFFAFVVVGAMGISWQTGMGAIFWGAVGLFLLTLF 157
Query: 120 KVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVG-IVTNGPTILALNASKFVTKDGLLF 178
++R +I IP+S + I +GIGLF+ L+GL N G IV N T++ + + LL
Sbjct: 158 RIRYWMISNIPLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLVMIG--DLSSHGVLLG 215
Query: 179 ILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGL 238
ILG F+ +L S A+L+SI++TS G + PDIS ++D G
Sbjct: 216 ILGFFIITVLSSRHFHAAVLVSIVVTSCCGLFFGDVHFSGVYSIPPDISGVIGEVDLSGA 275
Query: 239 LNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALL 298
L G++F+F +++ FD+ GT+ G++ KAG + GK P+ K L D+V + GA +
Sbjct: 276 LTLELAGIIFSFMLINLFDSSGTLIGVTDKAGLIDGNGKFPNMNKALYVDSVSSVAGAFI 335
Query: 299 GTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGY 358
GTS+VT YIES +G+ GGRTG+TA+V G++FL++ +F PL +P +ATA AL+ VG
Sbjct: 336 GTSSVTAYIESTSGVAVGGRTGLTAVVVGVMFLLV-MFFSPLVAIVPPYATAGALIFVGV 394
Query: 359 YMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPL 418
M S++ V+++D TE++PAF+ + +P+T+SI +GI +GF+SY ++K+ TGRW++++
Sbjct: 395 LMTSSLARVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSYCIMKVCTGRWRDLNLC 454
Query: 419 MYILALVF 426
+ ++A +F
Sbjct: 455 VVVVAALF 462
>gi|11497022 conserved hypothetical protein [Borrelia burgdorferi]
>gi|7446805|pir||C70219 conserved hypothetical protein
BBB23 - Lyme disease spirochete plasmid B/cp26
>gi|2689889|gb|AAC66327.1| (AE000792) conserved
hypothetical protein [Borrelia burgdorferi]
Length = 463
Score = 331 bits (839), Expect = 1e-89
Identities = 191/446 (42%), Positives = 265/446 (58%), Gaps = 25/446 (5%)
Query: 7 YFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKA-MGEGAKEALVAVTALSAGLT 65
+F+F+ N K E+LAGITTF++M+YI+ VNP ILS M GA LV T L+A +
Sbjct: 21 FFQFKNSDINYKKEILAGITTFLSMSYIIAVNPAILSNTGMPIGA---LVTATCLTAAFS 77
Query: 66 TIMMGLYAKKPFALAPGMGLNAYFAFTVA--PKYGWKVALAAVFVEGIIFIILSVTKVRS 123
TI+MGLY P ALA GM LNA+FAF+V W+VALAAVF+EG+IFI+LS +VR
Sbjct: 78 TILMGLYTNTPLALASGMSLNAFFAFSVVIGMNIPWQVALAAVFIEGLIFILLSFLRVRE 137
Query: 124 AIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFILGLF 183
II++IPI+ KY+I GIGLF+ IG + GI+ L + FV L LGLF
Sbjct: 138 QIINSIPINLKYSISVGIGLFIAFIGFVSGGIIIKNDATL-VGIGSFVDLKVLFTFLGLF 196
Query: 184 VAAILVSLRIKGALLISILLTSIVGWIVK----------AAPWPSQIFSWPDISYTFLKL 233
I L ++G++L +I + + WI PS+I + I F +L
Sbjct: 197 FIVIFEQLNVRGSILWAICSVTAIAWIYAIFNLEGAQAIGIQLPSRILKFESIGPIFNQL 256
Query: 234 DFQGLLNAGA---LGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAV 290
DF +LN + +VF D FDT+G + ++ K G L K GKIP+A+K+LL D +
Sbjct: 257 DFSYVLNEHFWTFISIVFILLFNDLFDTVGILISVTTKGGMLDKNGKIPNAKKILLVDGI 316
Query: 291 GTTLGALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATA 350
TT GA++G STVTTYIES GI EGG+TG+T++VTG LFL +F PL ++PA ATA
Sbjct: 317 ATTFGAIMGVSTVTTYIESFTGIAEGGKTGLTSIVTGTLFL-FAVFFAPLFIAVPASATA 375
Query: 351 PALVIVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKI--- 407
AL+ VG+ M + +DF + E + +FL+ IP YSI+ G VG Y L+ +
Sbjct: 376 AALIYVGFSMCREIIKIDFFNIRENISSFLIFFLIPLAYSISSGFFVGAAFYILVNVSFN 435
Query: 408 -FTGRWKEVHPLMYILALVFVGYFAY 432
F+ ++ P++ IL L+F+ F Y
Sbjct: 436 FFSKEKIKISPVLLILCLIFIIKFIY 461
>gb|AAG20256.1| (AE005100) Vng2116c [Halobacterium sp. NRC-1]
Length = 478
Score = 330 bits (838), Expect = 2e-89
Identities = 190/463 (41%), Positives = 277/463 (59%), Gaps = 41/463 (8%)
Query: 7 YFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSK--AMGEGAK------------- 51
YF F+ + T+++TE++AG+TTF+ M+YI+ VNP ++++ GE K
Sbjct: 6 YFGFDDHDTDLRTELVAGLTTFLAMSYIVLVNPVVMTQRTTAGEVVKPGIALANYSHDQT 65
Query: 52 -EALVAVTALSAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFV 108
+ L VT L++G+ ++M YA +PFALAPG+GLNA+FAFTV G W+ ALAAVF
Sbjct: 66 VQMLAVVTLLASGVAMLVMAFYANRPFALAPGLGLNAFFAFTVVGTLGVPWQTALAAVFT 125
Query: 109 EGIIFIILSVTKVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVT-NGPTILALNA 167
EG++FI+L+ R +I P K A+G GIGL+L +IGL +GIV + TILAL
Sbjct: 126 EGLLFIVLTAVGAREYVITLFPEPVKLAVGTGIGLYLAIIGLEAMGIVVGDAGTILALG- 184
Query: 168 SKFVTKDGLLFILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDIS 227
+ ++ ILGLF L + + G++++ I+ T+ G ++ A D
Sbjct: 185 NLAQNPVAVVSILGLFFTIALHARGVTGSIVLGIIATAATGGVLTFAGVVDPGVLIGDFV 244
Query: 228 YT---------FLKLDFQGLLNAGALG-----------VVFAFFMVDFFDTLGTVTGLSA 267
T + D L+ A G +VF FF VDFFDT GT+ G+
Sbjct: 245 RTGGIATQRLPHAQYDITPLVGAFLAGFQDIDAFSFALIVFTFFFVDFFDTAGTLVGVGQ 304
Query: 268 KAGFLTKEGKIPDAEKVLLTDAVGTTLGALLGTSTVTTYIESAAGIEEGGRTGMTALVTG 327
GFL +G +PDA++ L+ DA+GTT GA++GTSTVTTYIESA G+EEGGRTGM ALV
Sbjct: 305 AGGFLNTDGNLPDADEPLMADAIGTTFGAIIGTSTVTTYIESATGVEEGGRTGMVALVVA 364
Query: 328 LLFLVIGLFIGPLAGSIPAFATAPALVIVGYYMMSAMKNVDFNDPTEALPAFLVLITIPY 387
+LF + L + PLA +IP +A+ ALV+V M++ + +D++D T ++PA L +I +P+
Sbjct: 365 VLFF-LSLLVVPLAAAIPQYASHIALVVVALLMLANVTAIDWDDITHSIPAGLTIIVMPF 423
Query: 388 TYSIADGIGVGFISYTLLKIFTGRWKEVHPLMYILALVFVGYF 430
TYSIA GI G +SY ++K+ TG EV ++LA F+ YF
Sbjct: 424 TYSIAYGIAAGIVSYPVVKVATGDADEVAIGQWLLAAAFIVYF 466
>gb|AAA62016.1| (L10328) f470 [Escherichia coli]
Length = 470
Score = 328 bits (832), Expect = 8e-89
Identities = 169/428 (39%), Positives = 268/428 (62%), Gaps = 8/428 (1%)
Query: 2 GWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALS 61
G R F+ ++GT ++TE++AG+TTF+TM YI+FVNP IL A + + + T L
Sbjct: 40 GTLSRLFKLPQHGTTVRTELIAGMTTFLTMVYIVFVNPQILGAAQMD--PKVVFVTTCLI 97
Query: 62 AGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVT 119
AG+ +I MG++A P ALAP MGLNA+FAF V G W+ + A+F + ++
Sbjct: 98 AGIGSIAMGIFANLPVALAPAMGLNAFFAFVVVGAMGISWQTGMGAIFWGAVGLFXXTLF 157
Query: 120 KVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVG-IVTNGPTILALNASKFVTKDGLLF 178
++R +I IP+S + I +GIGLF+ L+GL N G IV N T++ + + LL
Sbjct: 158 RIRYWMISNIPLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLVMIG--DLSSHGVLLG 215
Query: 179 ILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLDFQGL 238
ILG F+ +L S A+L+SI++TS G + PDIS ++D G
Sbjct: 216 ILGFFIITVLSSRHFHAAVLVSIVVTSCCGLFFGDVHFSGVYSIPPDISGVIGEVDLSGX 275
Query: 239 LNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALL 298
L G++F+F +++ FD+ GT+ G++ KAG + GK P+ K L D+V + GA +
Sbjct: 276 LTLELAGIIFSFMLINLFDSSGTLIGVTDKAGLIDGNGKFPNMNKALYVDSVSSVAGAFI 335
Query: 299 GTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGY 358
GTS+VT YIES +G+ GGRTG+TA+V G++FL++ +F PL +P +ATA AL+ VG
Sbjct: 336 GTSSVTAYIESTSGVAVGGRTGLTAVVVGVMFLLV-MFFSPLVAIVPPYATAGALIFVGV 394
Query: 359 YMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHPL 418
M S++ V+++D TE++PAF+ + +P+T+SI +GI +GF+SY ++K+ TGRW++++
Sbjct: 395 LMTSSLARVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSYCIMKVCTGRWRDLNLC 454
Query: 419 MYILALVF 426
+ ++A +F
Sbjct: 455 VVVVAALF 462
>pir||G64666 conserved hypothetical integral membrane protein HP1175 -
Helicobacter pylori (strain 26695)
>gi|2314333|gb|AAD08220.1| (AE000623) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 435
Score = 314 bits (795), Expect = 2e-84
Identities = 175/437 (40%), Positives = 273/437 (62%), Gaps = 16/437 (3%)
Query: 7 YFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALSAGLTT 66
+F+ +++ TN+ TE AG+TTF+TM YI+ +N ILS+A EAL++ TA+ L++
Sbjct: 3 FFKLKEHNTNIATEFRAGLTTFITMIYIVPLNALILSQA--NMPYEALLSATAIITILSS 60
Query: 67 IMMGLYAKKPFALAPGMGLNAYFAFTVAP--KYGWKVALAAVFVEGIIFIILSVTKVRSA 124
+ GL+A P A++ G+GL+AYF+F + K W+ AL V + G IF+ILS TK RS
Sbjct: 61 VFNGLWANTPIAMSVGLGLSAYFSFGLVQGLKLPWQSALGIVALSGAIFVILSFTKFRSW 120
Query: 125 IIHAIPISQKYAIGAGIGLFLTLIGLANVGIV-TNGPTILALNASKFVTKDGLLFILGLF 183
++ +IP + A+ AGIG F+ IGL + IV T+ T++ L F LL ++G+
Sbjct: 121 VMRSIPSDLRRAVSAGIGAFIAFIGLKEMHIVVTHKATLVTLG--DFGDPHVLLGVVGII 178
Query: 184 VAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWP-DISYTFLKLDFQGLL--- 239
+ L +L+I+G+ +I++L+TSI+ W++K AP+PS+ FS P I +LDF+G+
Sbjct: 179 LTFALYTLKIRGSFIIAVLITSILAWVLKLAPYPSEFFSMPASIGPIAFQLDFKGIFFDA 238
Query: 240 ----NAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLG 295
+ V+ FF+ D FD+LGT+ G+ K F E K + EK L DAV +
Sbjct: 239 SGAFTLALVPVIITFFVTDLFDSLGTLAGIGHKTDFFNDEEKNKELEKTLEADAVASLGS 298
Query: 296 ALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVI 355
A++G ST T +IESA+G+EEGGRTG+TA+ TG LF V+ LF PL +IP+ A P LV+
Sbjct: 299 AVVGVSTTTAFIESASGVEEGGRTGLTAVFTG-LFFVLTLFCLPLLKAIPSNAIYPVLVV 357
Query: 356 VGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEV 415
VG M S ++ V+F D ++ FL ++ +P T+SIADG+ GF+SY+++K+ +K +
Sbjct: 358 VGVLMFSVLEGVNFKDMAISVSTFLTVVMMPLTFSIADGLAFGFLSYSIIKLVQKDFKAL 417
Query: 416 HPLMYILALVFVGYFAY 432
+ + IL ++ V F +
Sbjct: 418 NSGIIILCIISVSVFIF 434
>pir||B71850 hypothetical protein jhp1102 - Helicobacter pylori (strain J99)
>gi|4155691|gb|AAD06675.1| (AE001537) putative
[Helicobacter pylori J99]
Length = 435
Score = 313 bits (794), Expect = 2e-84
Identities = 177/437 (40%), Positives = 276/437 (62%), Gaps = 16/437 (3%)
Query: 7 YFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALSAGLTT 66
+F+ +++ TN+ TE AG+TTF+TM YI+ +N ILS+A EAL++ TA+ L++
Sbjct: 3 FFKLKEHNTNIATEFRAGLTTFITMIYIVPLNALILSQA--NMPYEALLSATAIITILSS 60
Query: 67 IMMGLYAKKPFALAPGMGLNAYFAFTVAP--KYGWKVALAAVFVEGIIFIILSVTKVRSA 124
+ GL+A P A++ G+GL+AYF+F + K W+ AL V + G IF+ILS TK RS
Sbjct: 61 VFNGLWANTPIAMSVGLGLSAYFSFGLVQGLKLPWQSALGIVALSGAIFVILSFTKFRSW 120
Query: 125 IIHAIPISQKYAIGAGIGLFLTLIGLANVGIV-TNGPTILALNASKFVTKDGLLFILGLF 183
++ +IP + A+ AGIG F+ IGL + IV T+ T++ L F LL ++G+
Sbjct: 121 VMRSIPSDLRRAVSAGIGAFIAFIGLKEMHIVVTHKATLVTLG--DFSDPHVLLGVVGII 178
Query: 184 VAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWP-DISYTFLKLDFQGLL--N 240
+ L +L+IKG+ +I++L+TSI+ W++K AP+PS+ FS P IS +LD +G+
Sbjct: 179 LTFALYTLKIKGSFIIAVLITSILAWVLKLAPYPSEFFSMPASISPIAFQLDIKGIFFDA 238
Query: 241 AGA-----LGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLG 295
+GA + V+ FF+ D FD+LGT+ G+ K F E K + E+ L DAV +
Sbjct: 239 SGAFTLVLVPVIITFFVTDLFDSLGTLAGIGHKTDFFNDEEKNKELERTLEADAVASLGS 298
Query: 296 ALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVI 355
A++G ST T +IESA+G+EEGGRTG+TA+ TG LF V+ LF PL +IP+ A P LV+
Sbjct: 299 AVVGVSTTTAFIESASGVEEGGRTGLTAVFTG-LFFVLTLFCLPLLKAIPSNAIYPVLVV 357
Query: 356 VGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEV 415
VG M S ++ V+F D ++ FL ++ +P T+SIADG+ GF+SY+++K+ +K +
Sbjct: 358 VGVLMFSVLEGVNFKDMAISVSTFLTVVMMPLTFSIADGLAFGFLSYSIIKLVQKDFKAL 417
Query: 416 HPLMYILALVFVGYFAY 432
+ + IL ++ V F +
Sbjct: 418 NSGIIILCIISVSVFIF 434
>pir||G69993 conserved hypothetical protein ytiP - Bacillus subtilis
>gi|2293313|gb|AAC00391.1| (AF008220) YtiP [Bacillus
subtilis] >gi|2635483|emb|CAB14977.1| (Z99119) similar
to hypothetical proteins [Bacillus subtilis]
Length = 432
Score = 305 bits (773), Expect = 6e-82
Identities = 173/435 (39%), Positives = 260/435 (59%), Gaps = 27/435 (6%)
Query: 8 FEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALSAGLTTI 67
F ++ T++K E++AG+TTF TM YI+ VNP IL+ A G + A T +++ + T+
Sbjct: 2 FHLKEQQTSIKQEIIAGLTTFFTMVYIVVVNPVILANA-GVPFDQVFTA-TIIASIVGTL 59
Query: 68 MMGLYAKKPFALAPGMGLNAYFAFTVAPKYG----WKVALAAVFVEGIIFIILSVTKVRS 123
M L A P A+APGMGLNAY AF V + A +AVF G++FIILS+T +R
Sbjct: 60 WMALAANYPIAIAPGMGLNAYLAFHVVSASDGGITYATAFSAVFTAGVLFIILSLTPLRK 119
Query: 124 AIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGL------L 177
+I AIP + KY I GIGLF+ IGL GIV A + S VT L L
Sbjct: 120 QLIEAIPNNLKYGITTGIGLFIAFIGLRQAGIV-------AADESNLVTLGNLHSPGVIL 172
Query: 178 FILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFLKLD--- 234
++GL ++ +L+ L + GAL I + T+++ + + S P + + +
Sbjct: 173 TLVGLLISVVLMVLNVSGALFIGMAATALIAFFTGQLHFSKGFMSLPHLPEGLMISNPFT 232
Query: 235 -FQGLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTT 293
F +++ G VVF+F +V FDT GT+ G++ +AG L K K+P+ K LL D+ TT
Sbjct: 233 AFGDVIHHGLYAVVFSFLLVTIFDTTGTMIGVAEQAG-LMKNNKLPNVRKALLADSTATT 291
Query: 294 LGALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFA--TAP 351
+GA+ GTS T +IES+AG+ GGRTG+TAL ++F +F PL ++ A T+P
Sbjct: 292 VGAVFGTSPTTAFIESSAGVAAGGRTGLTALTVAVMFAA-SMFFSPLVSALSGIAAITSP 350
Query: 352 ALVIVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGR 411
AL+IVG MM ++ N+++ + EA PAFLV++ +P T SI+ GI +GFISY ++K G+
Sbjct: 351 ALIIVGSLMMGSVSNMNWKEMDEAFPAFLVILAMPLTSSISTGIALGFISYPIVKAARGK 410
Query: 412 WKEVHPLMYILALVF 426
W+E+HPL+ + A++F
Sbjct: 411 WREIHPLVIVFAILF 425
>pir||F81281 probable transmembrane transport protein Cj1369 [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968803|emb|CAB73796.1| (AL139078) putative
transmembrane transport protein [Campylobacter jejuni]
Length = 439
Score = 304 bits (770), Expect = 1e-81
Identities = 173/445 (38%), Positives = 264/445 (58%), Gaps = 27/445 (6%)
Query: 7 YFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAK-EALVAVTALSAGLT 65
+F+ ++ T+ KTEV+AG+TTF+ M YI+ VN I+ G EAL+ TAL +
Sbjct: 3 FFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNT---GMPIEALITATALITIVA 59
Query: 66 TIMMGLYAKKPFALAPGMGLNAYFAFTVA--PKYGWKVALAAVFVEGIIFIILSVTKVRS 123
+ +A P A++ GMGLNAYF F V W+ AL AVF+ IIF+ILS T R
Sbjct: 60 SAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAVFISSIIFLILSFTHFRL 119
Query: 124 AIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVT-NGPTILALNASKFVTKDGLLFILGL 182
+I IP + AI AGIG F+ +GL+ +G++ N T++++ K +LF G+
Sbjct: 120 WVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLVSIGNFK---SPHVLF--GI 174
Query: 183 FVAAILV---SLRIKGALLISILLTSIVGWI--VKAAPWPSQIFSWPDISYT------FL 231
F A+++ +++++GA ++ +L +SI+ WI + A +P QIFSWP+ S FL
Sbjct: 175 FTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIFSWPNFSMENGLGAIFL 234
Query: 232 KLDFQGLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLT--KEGKIPDAEKVLLTDA 289
+LD + LN + ++ FF+ FD++GT+TG+ + K G+ K L+ DA
Sbjct: 235 QLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFDDPKNGE-KKLSKTLMADA 293
Query: 290 VGTTLGALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFAT 349
G+ LGA+ GTSTVT ++ES G+E GGRTG+TALV + F LF+ PL +IPA A
Sbjct: 294 TGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF-AFTLFLLPLFKAIPANAI 352
Query: 350 APALVIVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFT 409
P LV+VG M +KN+DF D A+ +F +I +P+TYSI G GF+SY L++IF
Sbjct: 353 YPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTYSITTGFAFGFLSYLLVRIFK 412
Query: 410 GRWKEVHPLMYILALVFVGYFAYLA 434
W +++ + +L+L+ +G F +A
Sbjct: 413 REWDKINLGIIVLSLLSLGNFLLMA 437
>emb|CAB93408.1| (AL357524) putative integral membrane protein [Streptomyces
coelicolor A3(2)]
Length = 485
Score = 286 bits (725), Expect = 3e-76
Identities = 160/452 (35%), Positives = 254/452 (55%), Gaps = 27/452 (5%)
Query: 5 ERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEA----LVAVTAL 60
+RYF+ + G+ + E+ G TF MAYI+ +NP IL A + LV TAL
Sbjct: 27 DRYFKISERGSTLPREIRGGFATFFAMAYIIVLNPIILGSAKDMYGHQLDNGQLVTATAL 86
Query: 61 SAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYGWKVALAAVFVEGIIFIILSVTK 120
+A TT++MG+ P ALA G+G+N+ A +AP+ W A+ V + G + ++L T
Sbjct: 87 TAAFTTLLMGVIGNVPIALAAGLGVNSVVALQLAPRMSWPDAMGMVVLAGFVVMLLVATG 146
Query: 121 VRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDG----- 175
+R +++A+P S + AI GIGLF+ +IGL + G +T P + G
Sbjct: 147 LRERVMNAVPYSLRKAIAIGIGLFIMIIGLVDSGFITRMPDAAQTTVPIQLGTGGHLTGW 206
Query: 176 --LLFILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAA-----------PWPSQIFS 222
L+F+LG+ + L+ + GA+LISI++ + V I+ A WP +
Sbjct: 207 PVLVFVLGVLLTLALIVRKTPGAILISIVVMTGVALIINAVADIPSWGLTTPEWPGNPVA 266
Query: 223 WPDISYTFLKLDFQGLLNAGAL-GVVFAF--FMVDFFDTLGTVTGLSAKAGFLTKEGKIP 279
PD F G AG L GV+F F + FFD +GT+ G+S +A EG++P
Sbjct: 267 TPDFGLVGEVSLFGGFEKAGVLTGVLFVFTVLLSCFFDAMGTIMGISDEAKLTDGEGQMP 326
Query: 280 DAEKVLLTDAVGTTLGALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGP 339
KVL D V +G S T ++ES AG+ EG RTG +VTG LF + LF+ P
Sbjct: 327 GINKVLFVDGVAVAVGGASSASATTCFVESTAGVGEGARTGFANIVTGTLF-ALALFLTP 385
Query: 340 LAGSIPAFATAPALVIVGYYMMS-AMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVG 398
+A +P+ A PAL+ VG+ +++ ++K +D++D T A+PAF+ ++ +P+TYSI +GIG+G
Sbjct: 386 VATMVPSQAATPALIAVGFLILAGSIKEIDWSDFTVAIPAFVTMLMMPFTYSITNGIGMG 445
Query: 399 FISYTLLKIFTGRWKEVHPLMYILALVFVGYF 430
FI++++L++ GR +EV M++++ VF Y+
Sbjct: 446 FITFSVLRLAAGRGREVPVAMHVVSAVFAFYY 477
>pir||T35480 hypothetical protein SC6C5.09 SC6C5.09 - Streptomyces coelicolor
>gi|4008538|emb|CAA22507.1| (AL034492) hypothetical
protein SC6C5.09 [Streptomyces coelicolor A3(2)]
Length = 485
Score = 279 bits (705), Expect = 6e-74
Identities = 166/450 (36%), Positives = 244/450 (53%), Gaps = 23/450 (5%)
Query: 3 WFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEG---AKEALVAVTA 59
W +RYF G+ + EV GITTFM MAYI+ +NP ILS G ++AL+ TA
Sbjct: 27 WLDRYFHISHRGSTVAREVRGGITTFMAMAYIVLLNPVILSGKDAAGDTLGQKALITATA 86
Query: 60 LSAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYGWKVALAAVFVEGIIFIILSVT 119
+A LTT++MG K P ALA G+ ++ A V P+ W A+ + G++ ++L VT
Sbjct: 87 FAAALTTLLMGFVGKVPLALAAGLSVSGVIAGQVVPQMTWPQAMGMCVMYGVVIMLLVVT 146
Query: 120 KVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNG-PTILALN-ASKFVTKDGLL 177
+R I++AIP++ K+ I GIGLF+ +IGL G V G T L L A + LL
Sbjct: 147 GLREMIMNAIPLALKHGITMGIGLFIAIIGLVKGGFVHAGEATPLTLGPAGELAGWPVLL 206
Query: 178 FILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAA------PWPS-------QIFSWP 224
F L + +L + + GA+LI I+ +IV I+ A W + S P
Sbjct: 207 FAGTLLLIFMLQARNMPGAILIGIVTGTIVAAILNATGVIDPEQWANGAPELHGSAVSMP 266
Query: 225 DISYTFLKLDFQGLLNAGALGV---VFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDA 281
D S F L+F G GA+ V VF + FFD + T+ G+ +A +G++P
Sbjct: 267 DFS-LFGDLEFGGWGEVGAMTVGMIVFTLVLAGFFDAMATIIGVGTEAKLADDKGRMPGL 325
Query: 282 EKVLLTDAVGTTLGALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLA 341
K L D G +G + G S T ++ESA G+ EG RTG+ ++VTGL F LF P+
Sbjct: 326 SKALFIDGAGGAIGGVAGGSGQTVFVESATGVGEGARTGLASVVTGLFFAAC-LFFTPIT 384
Query: 342 GSIPAFATAPALVIVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFIS 401
+P + ALV++G MM ++VD+ D A+P FL ++ +P+TYSI G+ G IS
Sbjct: 385 AIVPQEVASAALVVIGAMMMMNARHVDWADRATAIPVFLTVVLMPFTYSITAGVAAGVIS 444
Query: 402 YTLLKIFTGRWKEVHPLMYILALVFVGYFA 431
Y +K+ GR +E+ M+ L ++FV YFA
Sbjct: 445 YVAIKVAQGRAREIGAFMWALTVIFVVYFA 474
>sp|P44530|YJCD_HAEIN HYPOTHETICAL PROTEIN HI0125 >gi|1074272|pir||C64143 hypothetical
protein HI0125 - Haemophilus influenzae (strain Rd KW20)
>gi|1573080|gb|AAC21799.1| (U32698) conserved
hypothetical protein [Haemophilus influenzae Rd]
Length = 438
Score = 269 bits (680), Expect = 5e-71
Identities = 159/436 (36%), Positives = 251/436 (57%), Gaps = 8/436 (1%)
Query: 1 MGWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTAL 60
M E+ FE ++ G+ ++ E++AG+TTF+ M Y + V P++L A G A+ +A T L
Sbjct: 1 MPTLEKTFELKQRGSTVRQEIIAGLTTFLAMVYSVIVVPNMLGAA-GFPAESVFIA-TCL 58
Query: 61 SAGLTTIMMGLYAKKPFALAPGMGLNAYFAFT--VAPKYGWKVALAAVFVEGIIFIILSV 118
AGL +I++GL+A P A+ + L A+ AF+ + K VAL AVF+ G++F ++S
Sbjct: 59 VAGLGSILIGLWANAPMAIGCAISLTAFTAFSLVIGQKVAIPVALGAVFLMGVVFTLIST 118
Query: 119 TKVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLF 178
T +R+ I+ +P + + G GIGLFL LI VG+V + L + F + ++
Sbjct: 119 TGIRAWILRNLPSNIAHGAGIGIGLFLLLIAANGVGLVVSNQAGLPVKLGDFTSFPVMMS 178
Query: 179 ILGLFVAAILVSLRIKGALLISILLTSIVGWIVKA-APWPSQIFSWPDISYT--FLKLDF 235
++GL + L ++IKG +L I+ +IVG I + +IF P FL+LDF
Sbjct: 179 LIGLALIIGLEKMKIKGGILWVIIAITIVGLIFDPNVKFGGEIFKMPTFGENSLFLQLDF 238
Query: 236 QGLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLG 295
G L L VVFA M FD GT+ ++ +A L K+G+I + K L +D++ +
Sbjct: 239 MGALQPAILPVVFALVMTAVFDATGTIRAVAGQADLLDKDGQIINGGKALTSDSISSLFS 298
Query: 296 ALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVI 355
L GT+ YIESAAG GG+TG+TA+V G+LFL++ LF PLA +P +ATAPAL+
Sbjct: 299 GLFGTAPAAVYIESAAGTAAGGKTGITAIVVGVLFLLM-LFFQPLAFLVPGYATAPALMY 357
Query: 356 VGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEV 415
VG M+S + +DF+D A+ + + I T +I GI +GF + + +I +G K +
Sbjct: 358 VGLLMLSNVSKLDFDDFVGAMSGLICAVFIVLTANIVTGIMLGFAALVIGRIVSGDIKRL 417
Query: 416 HPLMYILALVFVGYFA 431
+ I+A+V V ++A
Sbjct: 418 NVGTVIIAIVLVAFYA 433
>sp|P32702|YJCD_ECOLI HYPOTHETICAL 45.7 KD PROTEIN IN SOXR-ACS INTERGENIC REGION (O449)
>gi|7446796|pir||G65214 hypothetical 45.7 kD protein in
soxR-acs intergenic region - Escherichia coli (strain
K-12) >gi|396399|gb|AAC43158.1| (U00006) matches
PS00017: ATP/GTP-binding site motif A [Escherichia coli]
>gi|1790499|gb|AAC77034.1| (AE000479) orf, hypothetical
protein [Escherichia coli K12]
Length = 449
Score = 263 bits (664), Expect = 4e-69
Identities = 156/438 (35%), Positives = 245/438 (55%), Gaps = 11/438 (2%)
Query: 2 GWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALS 61
G + +F+ + G+ ++ EV+AG+TTF+ M Y + V P +L KA A A+ T L
Sbjct: 10 GSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPA--AVFVATCLV 67
Query: 62 AGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVA--PKYGWKVALAAVFVEGIIFIILSVT 119
AGL +I+MGL+A P A+ + L A+ AF++ VAL AVF+ G++F ++S T
Sbjct: 68 AGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTVISAT 127
Query: 120 KVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTI-LALNASKFVTKDGLLF 178
+RS I+ +P + G GIGLFL LI VG+V P L + F T ++
Sbjct: 128 GIRSWILRNLPHGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFATFPVIMS 187
Query: 179 ILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDIS-----YTFLKL 233
++GL V L L++ G +L++I+ SIVG I S +F+ P +S L
Sbjct: 188 LVGLAVIIGLEKLKVPGGILLTIIGISIVGLIFDPNVHFSGVFAMPSLSDENGNSLIGSL 247
Query: 234 DFQGLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTT 293
D G LN L V A M FD GT+ ++ +A L K+G+I D K L TD++ +
Sbjct: 248 DIMGALNPVVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSMSSV 307
Query: 294 LGALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPAL 353
L+G + YIESAAG GG+TG+TA+ G+LFL+I LF+ PL+ +P +ATAPAL
Sbjct: 308 FSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLI-LFLSPLSYLVPGYATAPAL 366
Query: 354 VIVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWK 413
+ VG M+S + +DF D +A+ + + I T +I GI +GF + + ++ +G W+
Sbjct: 367 MYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWR 426
Query: 414 EVHPLMYILALVFVGYFA 431
+++ ++A+ V ++A
Sbjct: 427 KLNIGTVVIAVALVTFYA 444
>dbj|BAB05749.1| (AP001514) unknown conserved protein [Bacillus halodurans]
Length = 432
Score = 256 bits (647), Expect = 4e-67
Identities = 159/446 (35%), Positives = 251/446 (55%), Gaps = 29/446 (6%)
Query: 3 WFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALSA 62
W + YF+ + T +K E LAG+ +F+T+ YI+ VN ILS++ G + A++A T +++
Sbjct: 5 WMKNYFDLPGHETTLKREFLAGLISFITIVYIIAVNGAILSES-GIPLEAAIIA-TIITS 62
Query: 63 GLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG--WKVALAAVFVEGIIFIILSVTK 120
+ +MG +A P L PGMG+NA F++T+ G W+ ALA V + G+I I+S T+
Sbjct: 63 FVGCWLMGFWANAPIILVPGMGINAMFSYTLVHSMGLTWQEALAVVVISGLIVTIISFTQ 122
Query: 121 VRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGP-TILALN--ASKFVTKDGLL 177
+ ++ +IP S K+ I G+GLFL LIGL G++T G ++LAL +S FV +
Sbjct: 123 LAQLLLDSIPSSLKHGITVGLGLFLALIGLEKGGLITRGENSLLALGDLSSPFV----IA 178
Query: 178 FILGLFVAAILVSLRIKGALLISIL----LTSIVGWIV--KAAPWPSQIFSWPDISYTFL 231
++ + +A L + G LISI+ + +++G I + + W + +P + F
Sbjct: 179 TLMSVVLAVALFMRNVPGNFLISIIAGTSIAAVLGVISFDELSTWTVPLDQYPSL---FG 235
Query: 232 KLDFQGLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVG 291
+ F G + VF+ MV F+ +G + G L + + + V
Sbjct: 236 AISFSGFSSFSFFVAVFSLTMVLLFENIGLING------HLNMTNRPEKFSRSFQANGVS 289
Query: 292 TTLGALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAP 351
+ GTS +E+ AGI GGRTG+TA+VTG LFL + LF PL IP A AP
Sbjct: 290 IFTSGIFGTSPTVATVETTAGIAAGGRTGVTAIVTGSLFL-LSLFAIPLVKLIPGSAIAP 348
Query: 352 ALVIVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGR 411
L+I+G M+ +K +DF D +E PAFLV++ IP++YSIADGI GFI+Y L+K G+
Sbjct: 349 VLMIIGGLMVQQVKQIDFQDFSEGFPAFLVIVMIPFSYSIADGIAFGFIAYPLVKFALGK 408
Query: 412 WKEVHPLMYILALVFVGYFAYLAGVF 437
KEV +Y++A +F + ++A V+
Sbjct: 409 AKEVPIPLYVIATLF--FLTFVAHVY 432
>emb|CAA06848.1| (AJ006085) hypothetical membrane protein [Shewanella massilia]
Length = 450
Score = 233 bits (588), Expect = 3e-60
Identities = 135/433 (31%), Positives = 234/433 (53%), Gaps = 8/433 (1%)
Query: 3 WFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALSA 62
+ +RYF ++ G+ ++ EV+AG+TTF+ M Y + V P++L +A + A+ T L A
Sbjct: 15 FLDRYFSIQQRGSTVRQEVIAGLTTFLAMVYSVIVVPNMLGQAGFDPG--AVFIATCLIA 72
Query: 63 GLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYGWK--VALAAVFVEGIIFIILSVTK 120
+++MGL+A P A+ + L A+ AF++ G V L A+F+ G+ F ++SVT
Sbjct: 73 SFGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQGMSIPVTLGAIFLMGVTFTLVSVTG 132
Query: 121 VRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGPTILALNASKFVTKDGLLFIL 180
+R ++ +P + G GIGLFL LI +V ++ L + + + IL
Sbjct: 133 IRQWVLANLPKGIAHGTGIGIGLFLLLIATNSVQLIVANSAGLPVKLGDINSLPVIATIL 192
Query: 181 GLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFSWPDISYTFL---KLDFQG 237
GL L + G +L+ I+ S+ G + + +F+ PD++ +LD G
Sbjct: 193 GLAATIGLERRGVPGGILLVIIALSVFGLVFDPSVKYQGLFALPDLTSEHSLIGQLDIMG 252
Query: 238 LLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGAL 297
N L +V A M FD GT+ ++ +A K+ I K L +D+V + + L
Sbjct: 253 AFNPVVLPIVLALVMTAIFDATGTIRAVAGQANLFDKDDNIVGGGKALTSDSVSSMVAGL 312
Query: 298 LGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVG 357
+G + YIESAAG GG+TG+TA + G+LFL++ +F+ PL+ +PA+ATAPAL+ VG
Sbjct: 313 VGGAPAAVYIESAAGTAAGGKTGLTATIVGVLFLLM-MFLAPLSYLVPAYATAPALMYVG 371
Query: 358 YYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIFTGRWKEVHP 417
M+S + +DF+D +A+ + I + +I GI +GF++ + +I +G W+++
Sbjct: 372 LLMLSNVAKLDFDDKVDAMAGLTCAVFIILSCNIVTGIMLGFVTLVVGRICSGEWRKLKV 431
Query: 418 LMYILALVFVGYF 430
+ + L V ++
Sbjct: 432 GVLAITLGLVVFY 444
>gb|AAF01525.1|AC009991_21 (AC009991) hypothetical protein [Arabidopsis thaliana]
Length = 579
Score = 231 bits (582), Expect = 2e-59
Identities = 162/508 (31%), Positives = 240/508 (46%), Gaps = 108/508 (21%)
Query: 8 FEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMG-------------------- 47
F+ + + TE+ AG TF+TMAYIL VN ILS + G
Sbjct: 37 FKLAERNSTFTTELRAGTATFLTMAYILAVNASILSDSGGTCSVSDCIPLCSNPAIEPSQ 96
Query: 48 ----------------------------EGAKEALVAVTALSAGLTTIMMGLYAKKPFAL 79
E ++ L+ T ++ + ++MGL A P AL
Sbjct: 97 CTGPGLRLIQPDVSCKFNPVNPGYAACVEEIRKDLIVATVAASLIGCVIMGLMANLPLAL 156
Query: 80 APGMGLNAYFAFTVAPKYG-----WKVALAAVFVEGIIFIILSVTKVRSAIIHAIPISQK 134
APGMG NAYFA+TV +G ++ ALAAVF+EG+IF+ +S R+ + +P +
Sbjct: 157 APGMGTNAYFAYTVVGFHGSGSISYRTALAAVFIEGLIFLFISAIGFRAKLAKLVPKPVR 216
Query: 135 YAIGAGIGLFLTLIGLAN---VGIVTNGPTIL-------------------------ALN 166
+ AGIGLFL IGL N +G+V P+ L +L
Sbjct: 217 ISSSAGIGLFLAFIGLQNNQGIGLVGYSPSTLVTLAACPASSRISLAPVITSANGTVSLL 276
Query: 167 ASKFVTKDGL------------LFILGLFVAAILVSLRIKGALLISILLTSIVGWI---- 210
A V+ D + L I+G + A + +KGA++ I+ + V W
Sbjct: 277 AGGSVSGDIMCIHGRMESPTFWLGIVGFVIIAYCLVKNVKGAMIYGIVFVTAVSWFRNTE 336
Query: 211 VKAAPWPS----------QIFSWPDISYTFLKLDFQGLLNAGALGVVFAFFMVDFFDTLG 260
V A P S +I I +T L F G+ + F VD DT G
Sbjct: 337 VTAFPNTSAGDAAHDYFKKIVDVHVIKHTAGALSFSGINKGHFWEALVTFLYVDILDTTG 396
Query: 261 TVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGALLGTSTVTTYIESAAGIEEGGRTG 320
T+ ++ AGF+ ++G ++DA +G+LLGTS VT +IES+ GI EGGRTG
Sbjct: 397 TLYSMARFAGFVDEKGDFAGQYFAFMSDASAIVIGSLLGTSPVTVFIESSTGIREGGRTG 456
Query: 321 MTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYYMMSAMKNVDFNDPTEALPAFL 380
+TA+ + FL + +F PL SIPA+A P L++VG MM ++ +D+ D EA+PAF+
Sbjct: 457 LTAITVAVYFL-LAMFFTPLLASIPAWAVGPPLILVGVMMMKSVTEIDWEDMREAIPAFV 515
Query: 381 VLITIPYTYSIADGIGVGFISYTLLKIF 408
+I +P TYS+A G+ G SY +L ++
Sbjct: 516 TMILMPLTYSVAYGLIGGIGSYVVLHLW 543
>pir||T40742 hypothetical integral membrane protein - fission yeast
(Schizosaccharomyces pombe) >gi|3850113|emb|CAA21902.1|
(AL033388) hypothetical integral membrane protein
[Schizosaccharomyces pombe]
Length = 625
Score = 221 bits (557), Expect = 1e-56
Identities = 159/461 (34%), Positives = 236/461 (50%), Gaps = 73/461 (15%)
Query: 11 EKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMG----------------------E 48
E+ G+ E+ AG+TTF MAYIL VN IL G E
Sbjct: 37 ERKGSRFSLEISAGLTTFFAMAYILAVNATILVDTGGTCECTEANRDDCDKLDDYVLCKE 96
Query: 49 GAKEALVAVTALSAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVAPKYG-----WKVAL 103
LV TA + L + MGL+A P +APGMGLNAYFA+ V G ++ AL
Sbjct: 97 DFHRDLVTATAAISALASFCMGLFANMPVGMAPGMGLNAYFAYQVVGYNGTGRVSYREAL 156
Query: 104 AAVFVEGIIFIILSVTKVRSAIIHAIPISQKYAIGAGIGLFLTLIGL---ANVGIVTNGP 160
AVFVEG IF L+V +R + IP S K+A GAGIGL+LT+IGL A +G++ +
Sbjct: 157 LAVFVEGFIFTGLTVIGLRQWLARVIPASLKFATGAGIGLYLTIIGLSPSAGLGVIGHSS 216
Query: 161 T-ILALNAS--KFVTKD----------GLLFILGLF----VAAILVSLRIKGALLISILL 203
+ I+AL +++ D G +++ G+F + AIL+ + KGA+L I L
Sbjct: 217 SDIVALGGCPPEYLNADYSCNGHQLQSGRMWV-GIFCGGVLTAILMMYKFKGAVLAGIAL 275
Query: 204 TSIVGWIVKAAPWPSQIFSWP-----DISYTFLK--LDFQGL----------LNAGALGV 246
+I W P S + +P D ++ F K + F+ + + G +
Sbjct: 276 VTITSW-----PRRSLVTMFPHTLTGDYNFDFFKKVVSFRKINRILVAQQWNVTGGQFAI 330
Query: 247 -VFAFFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVL-LTDAVGTTLGALLGTSTVT 304
+ F VD D GT+ ++ AG + + + V + DA+ ++G+L G S VT
Sbjct: 331 ALITFLYVDIMDMTGTLYSMANYAGLVDPRTQDFEGSAVAYIVDALSISIGSLFGCSPVT 390
Query: 305 TYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVGYYMMSAM 364
+IES +GI GGRTG+ +V G+ F I LF P+ SIP +AT LV+VG MM +
Sbjct: 391 AFIESGSGISAGGRTGILGMVVGICFF-ISLFFAPIFSSIPVWATGSTLVLVGSMMMKST 449
Query: 365 KNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLL 405
++++ +++PAF+ + +P+TYSIA G+ G I Y LL
Sbjct: 450 TLINWSYLGDSIPAFITIALMPFTYSIAYGLIAGIICYALL 490
>dbj|BAB09401.1| (AB024031) transmembrane transport protein-like [Arabidopsis
thaliana]
Length = 547
Score = 212 bits (534), Expect = 7e-54
Identities = 146/471 (30%), Positives = 234/471 (48%), Gaps = 70/471 (14%)
Query: 6 RYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKA-------------------- 45
R+F+ E T TE+ A TF+TMAYI+ VN +IL+ +
Sbjct: 46 RFFKLEARKTTFTTELRAATATFLTMAYIITVNANILADSGATCSINDCSTVASSSPPGP 105
Query: 46 ---MGEG---------AKEALVAVTALSAGLTTIMMGLYAKKPFALAPGMGLNAYFAFTV 93
+G K+ LV T+LSA + ++ MGL A PF LAPGMG NAY A+ V
Sbjct: 106 ECVLGSNPGYEQCISRVKKDLVVATSLSAMVGSLAMGLLANLPFGLAPGMGANAYIAYNV 165
Query: 94 APKYG-----WKVALAAVFVEGIIFIILSVTKVRSAIIHAIPISQKYAIGAGIGLFLTLI 148
G + A+A V +EG F+ +S +R + IP + + A GIG+F+ +
Sbjct: 166 VGFRGSGSISYHTAMAIVLLEGCAFLAVSALGLRGKLARLIPQTVRLACAVGIGMFIAFV 225
Query: 149 GLA-NVGIVTNGP---TILALNA-------------SKFVTKDGLLFILGLFVAAILVSL 191
GL N GI GP T++ L A K + L ++G + + +
Sbjct: 226 GLQMNQGIGLVGPDKSTLVTLTACAETDPVTGACLGGKMKSPTFWLAVVGFLITSFGLMK 285
Query: 192 RIKGALLISILLTSIVGWI--VKAAPWPSQIFSWPDISYTFLKLDFQGLLNA-GALG--- 245
+KG+++ I+ + + WI + +P + +Y +DF + + GA+
Sbjct: 286 NVKGSMIYGIVFVTAISWIRGTQVTIFPHTPLGDSNYNYFTKIVDFHKIQSTLGAISFTE 345
Query: 246 -------VVFA-FFMVDFFDTLGTVTGLSAKAGFLTKEGKIPDAEKVLLTDAVGTTLGAL 297
V FA F VD T G + ++ GF+ ++GK L DA + +G+
Sbjct: 346 FRKSEVWVAFATLFYVDLLGTTGVLYTMAEIGGFV-EDGKFEGEYAAYLVDAGSSVVGSA 404
Query: 298 LGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFIGPLAGSIPAFATAPALVIVG 357
LG +T T++ES+AG++EGG+TG+TA++ GL FL +F PL ++P +A P+LV+VG
Sbjct: 405 LGVTTTATFVESSAGLKEGGKTGLTAVIVGLYFLA-SMFFTPLVTNVPRWAVGPSLVMVG 463
Query: 358 YYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGVGFISYTLLKIF 408
MM +K++ + + EA+ AF+ ++ +P TYSIA+GI G Y L ++
Sbjct: 464 VMMMGVVKDIRWGETKEAVTAFVTILLMPLTYSIANGIIAGIGIYLALSMY 514
>sp|Q46818|YGFR_ECOLI HYPOTHETICAL 28.4 KD PROTEIN IN KDUI-LYSS INTERGENIC REGION
>gi|7466473|pir||E65072 hypothetical protein b2885 -
Escherichia coli (strain K-12) >gi|887835|gb|AAA83066.1|
(U28375) ORF_o276 [Escherichia coli]
>gi|1789251|gb|AAC75923.1| (AE000372) putative
oxidoreductase [Escherichia coli K12]
Length = 276
Score = 155 bits (387), Expect = 1e-36
Identities = 93/274 (33%), Positives = 147/274 (52%), Gaps = 8/274 (2%)
Query: 163 LALNASKFVTKDGLLFILGLFVAAILVSLRIKGALLISILLTSIVGWIVKAAPWPSQIFS 222
+AL A F + ++ +LGL V L R+ G +L+ I+ SI+G I A + +
Sbjct: 1 MALGA--FTSFPVMMSLLGLAVIFGLEKCRVPGGILLVIIAISIIGLIFDPAVKYHGLVA 58
Query: 223 WPDIS-----YTFLKLDFQGLLNAGALGVVFAFFMVDFFDTLGTVTGLSAKAGFLTKEGK 277
P ++ LD G L L V A M FD GT+ ++ +A L K+ +
Sbjct: 59 MPSLTGEDGKSLIFSLDIMGALQPTVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDNQ 118
Query: 278 IPDAEKVLLTDAVGTTLGALLGTSTVTTYIESAAGIEEGGRTGMTALVTGLLFLVIGLFI 337
I + K L +D+V + L+G + YIESAAG GG+TG+TA V G LFL+I LF+
Sbjct: 119 IINGGKALTSDSVSSIFSGLVGAAPAAVYIESAAGTAAGGKTGLTATVVGALFLLI-LFL 177
Query: 338 GPLAGSIPAFATAPALVIVGYYMMSAMKNVDFNDPTEALPAFLVLITIPYTYSIADGIGV 397
PL+ IP +ATAPAL+ VG M+S + +DFND +A+ + + I T +I GI +
Sbjct: 178 SPLSFLIPGYATAPALMYVGLLMLSNVSKLDFNDFIDAMAGLVCAVFIVLTCNIVTGIML 237
Query: 398 GFISYTLLKIFTGRWKEVHPLMYILALVFVGYFA 431
GF++ + ++F W++++ I+ V ++A
Sbjct: 238 GFVTLVVGRVFAREWQKLNIGTVIITAALVAFYA 271
>sp|Q46817|YGFQ_ECOLI HYPOTHETICAL 19.7 KD PROTEIN IN KDUI-LYSS INTERGENIC REGION
>gi|7466472|pir||D65072 hypothetical protein b2884 -
Escherichia coli (strain K-12) >gi|887834|gb|AAA83065.1|
(U28375) ORF_o189 [Escherichia coli]
>gi|1789250|gb|AAC75922.1| (AE000372) orf, hypothetical
protein [Escherichia coli K12]
Length = 189
Score = 109 bits (271), Expect = 5e-23
Identities = 64/161 (39%), Positives = 93/161 (57%), Gaps = 4/161 (2%)
Query: 2 GWFERYFEFEKYGTNMKTEVLAGITTFMTMAYILFVNPDILSKAMGEGAKEALVAVTALS 61
G + YF+ G+ ++ EVLAG+TTF+ M Y + V P +L KA A A+ T L
Sbjct: 16 GALDNYFKITARGSTVRQEVLAGLTTFLAMVYSVIVVPGMLGKAGFPPA--AVFVATCLV 73
Query: 62 AGLTTIMMGLYAKKPFALAPGMGLNAYFAFTVA--PKYGWKVALAAVFVEGIIFIILSVT 119
AG +++MGL+A P A+ + L A+ AF++ + VAL AVF+ G+IF +SVT
Sbjct: 74 AGFGSLLMGLWANLPMAIGCAISLTAFTAFSLVLGQQISVPVALGAVFLMGVIFTAISVT 133
Query: 120 KVRSAIIHAIPISQKYAIGAGIGLFLTLIGLANVGIVTNGP 160
VR+ I+ +P+ + G GIGLFL LI VG+V P
Sbjct: 134 GVRTWILRNLPMGIAHGTGIGIGLFLLLIAANGVGMVIKNP 174
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.326 0.143 0.421
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148645440
Number of Sequences: 2977
Number of extensions: 6170053
Number of successful extensions: 21487
Number of sequences better than 1.0e-10: 35
Number of HSP's better than 0.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 21284
Number of HSP's gapped (non-prelim): 37
length of query: 437
length of database: 189,106,746
effective HSP length: 54
effective length of query: 383
effective length of database: 156,788,448
effective search space: 60049975584
effective search space used: 60049975584
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 166 (69.1 bits)