BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1661 (PAB1661) DE:Hypothetical protein
         (257 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75084 hypothetical protein PAB1661 - Pyrococcus abyssi (st...   518  e-146

>pir||F75084 hypothetical protein PAB1661 - Pyrococcus abyssi (strain Orsay)
           >gi|5458491|emb|CAB49979.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 257
           
 Score =  518 bits (1320), Expect = e-146
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MKEKKIKLLNLSSHKLAWWVLMRRVKVLALISSILIMVATIISWVITQDVNITLALLTLA 60
           MKEKKIKLLNLSSHKLAWWVLMRRVKVLALISSILIMVATIISWVITQDVNITLALLTLA
Sbjct: 1   MKEKKIKLLNLSSHKLAWWVLMRRVKVLALISSILIMVATIISWVITQDVNITLALLTLA 60

Query: 61  STIATVIMAVTIYELDIAIKELNFETVSTIYEMIDDTLKKQIQEIKSWRSQGISIEDFLE 120
           STIATVIMAVTIYELDIAIKELNFETVSTIYEMIDDTLKKQIQEIKSWRSQGISIEDFLE
Sbjct: 61  STIATVIMAVTIYELDIAIKELNFETVSTIYEMIDDTLKKQIQEIKSWRSQGISIEDFLE 120

Query: 121 DQRKRKIVKEASKTLNRIGYFVYREFIGEWFIQEQYAGLILDSYLAMLPYLKAFRDSSEC 180
           DQRKRKIVKEASKTLNRIGYFVYREFIGEWFIQEQYAGLILDSYLAMLPYLKAFRDSSEC
Sbjct: 121 DQRKRKIVKEASKTLNRIGYFVYREFIGEWFIQEQYAGLILDSYLAMLPYLKAFRDSSEC 180

Query: 181 KKRSLNEKEVDICKKSPWFIRRFYLLLVVISYHYFCKNFPAQCKAIFNSYKLEPKNPVPE 240
           KKRSLNEKEVDICKKSPWFIRRFYLLLVVISYHYFCKNFPAQCKAIFNSYKLEPKNPVPE
Sbjct: 181 KKRSLNEKEVDICKKSPWFIRRFYLLLVVISYHYFCKNFPAQCKAIFNSYKLEPKNPVPE 240

Query: 241 QWLENDVKRWLKRRGYL 257
           QWLENDVKRWLKRRGYL
Sbjct: 241 QWLENDVKRWLKRRGYL 257


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.138    0.412 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89272646
Number of Sequences: 2977
Number of extensions: 3349213
Number of successful extensions: 13672
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13669
Number of HSP's gapped (non-prelim): 1
length of query: 257
length of database: 189,106,746
effective HSP length: 53
effective length of query: 204
effective length of database: 157,386,935
effective search space: 32106934740
effective search space used: 32106934740
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 164 (68.3 bits)