BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1663 (PAB1663) DE:Hypothetical protein
         (223 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75084 hypothetical protein PAB1663 - Pyrococcus abyssi (st...   445  e-124
pir||F71063 hypothetical protein PH1204 - Pyrococcus horikoshii ...   248  5e-65

>pir||C75084 hypothetical protein PAB1663 - Pyrococcus abyssi (strain Orsay)
           >gi|5458488|emb|CAB49976.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 223
           
 Score =  445 bits (1133), Expect = e-124
 Identities = 223/223 (100%), Positives = 223/223 (100%)

Query: 1   MEGAKSSSDSNLPLIQAKNLLTFYNFIHKNGNTRRCGWVKLRLGRYKLIFEMPNRVRLPV 60
           MEGAKSSSDSNLPLIQAKNLLTFYNFIHKNGNTRRCGWVKLRLGRYKLIFEMPNRVRLPV
Sbjct: 1   MEGAKSSSDSNLPLIQAKNLLTFYNFIHKNGNTRRCGWVKLRLGRYKLIFEMPNRVRLPV 60

Query: 61  RYRREGELVRVITSQENLMETIFKLSSYVGNTEMSIVEGKRNVGEARIIKDKGNTYTMIA 120
           RYRREGELVRVITSQENLMETIFKLSSYVGNTEMSIVEGKRNVGEARIIKDKGNTYTMIA
Sbjct: 61  RYRREGELVRVITSQENLMETIFKLSSYVGNTEMSIVEGKRNVGEARIIKDKGNTYTMIA 120

Query: 121 LYDDSPYIPARVTFYVAAPLENSGEFLANMMTIFEDVKEIEERISKDEFVIKFRSKIRRV 180
           LYDDSPYIPARVTFYVAAPLENSGEFLANMMTIFEDVKEIEERISKDEFVIKFRSKIRRV
Sbjct: 121 LYDDSPYIPARVTFYVAAPLENSGEFLANMMTIFEDVKEIEERISKDEFVIKFRSKIRRV 180

Query: 181 GPFSSLGEEENVEIEMKRENLQDCVELKVKRIKIGNLKFEMSE 223
           GPFSSLGEEENVEIEMKRENLQDCVELKVKRIKIGNLKFEMSE
Sbjct: 181 GPFSSLGEEENVEIEMKRENLQDCVELKVKRIKIGNLKFEMSE 223


>pir||F71063 hypothetical protein PH1204 - Pyrococcus horikoshii
           >gi|3257621|dbj|BAA30304.1| (AP000005) 187aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 187
           
 Score =  248 bits (626), Expect = 5e-65
 Identities = 114/182 (62%), Positives = 154/182 (83%)

Query: 42  RLGRYKLIFEMPNRVRLPVRYRREGELVRVITSQENLMETIFKLSSYVGNTEMSIVEGKR 101
           +L  YKL+FEMP RVRLP +YRRE +LVRV TSQENL++T+FKLS+Y+G+ E+SIV+GK+
Sbjct: 3   KLMSYKLVFEMPQRVRLPAKYRREWDLVRVTTSQENLVKTLFKLSNYIGSAEISIVKGKK 62

Query: 102 NVGEARIIKDKGNTYTMIALYDDSPYIPARVTFYVAAPLENSGEFLANMMTIFEDVKEIE 161
           NVGEARIIKD  N YTM+A Y +SPYIP  VTFY+AAPL++S +F+  M+ +F+++KEI 
Sbjct: 63  NVGEARIIKDGENVYTMVAFYKESPYIPDSVTFYIAAPLKDSAKFITKMVAMFDEIKEIN 122

Query: 162 ERISKDEFVIKFRSKIRRVGPFSSLGEEENVEIEMKRENLQDCVELKVKRIKIGNLKFEM 221
           E I  +E +I F+SK+RRVGPFSSL EEENV+IEM+++NL +C+EL+VKR+K+G ++ EM
Sbjct: 123 EEIQGNEVIITFKSKVRRVGPFSSLNEEENVKIEMEKKNLDNCLELRVKRMKVGAIELEM 182

Query: 222 SE 223
           SE
Sbjct: 183 SE 184


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.137    0.381 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74968627
Number of Sequences: 2977
Number of extensions: 3005364
Number of successful extensions: 7692
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7690
Number of HSP's gapped (non-prelim): 2
length of query: 223
length of database: 189,106,746
effective HSP length: 57
effective length of query: 166
effective length of database: 154,992,987
effective search space: 25728835842
effective search space used: 25728835842
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 163 (67.9 bits)