BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1671 (PAB1671) DE:Hypothetical protein
(320 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75082 hypothetical protein PAB1671 - Pyrococcus abyssi (st... 636 0.0
pir||C75072 hypothetical protein PAB1727 - Pyrococcus abyssi (st... 82 7e-15
pir||G75139 hypothetical protein PAB1750 - Pyrococcus abyssi (st... 75 1e-12
pir||E71099 hypothetical protein PH1057 - Pyrococcus horikoshii ... 71 2e-11
>pir||F75082 hypothetical protein PAB1671 - Pyrococcus abyssi (strain Orsay)
>gi|5458475|emb|CAB49963.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 320
Score = 636 bits (1622), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MAELKLEAREYMEKIVKKLKDLSPKEILSYAIFNEEAEIRYYRELAKRSERESVRVLFLQ 60
MAELKLEAREYMEKIVKKLKDLSPKEILSYAIFNEEAEIRYYRELAKRSERESVRVLFLQ
Sbjct: 1 MAELKLEAREYMEKIVKKLKDLSPKEILSYAIFNEEAEIRYYRELAKRSERESVRVLFLQ 60
Query: 61 MADESQEHHDRLYKLFKELYPNEEPVEVDAPPVEVAPFYPKFETVDDYLEALEYCMESEL 120
MADESQEHHDRLYKLFKELYPNEEPVEVDAPPVEVAPFYPKFETVDDYLEALEYCMESEL
Sbjct: 61 MADESQEHHDRLYKLFKELYPNEEPVEVDAPPVEVAPFYPKFETVDDYLEALEYCMESEL 120
Query: 121 FAKETYEVLALKATNEDARVLFAQLAEMENDHYLRLKKLYNLLTSFKQKKILPEDLEPGG 180
FAKETYEVLALKATNEDARVLFAQLAEMENDHYLRLKKLYNLLTSFKQKKILPEDLEPGG
Sbjct: 121 FAKETYEVLALKATNEDARVLFAQLAEMENDHYLRLKKLYNLLTSFKQKKILPEDLEPGG 180
Query: 181 YLLSDRTKARYLFLDMLSKSKEAYLFTRENPEKVKEWLKRDDINIIWVTNLPGKGRISPR 240
YLLSDRTKARYLFLDMLSKSKEAYLFTRENPEKVKEWLKRDDINIIWVTNLPGKGRISPR
Sbjct: 181 YLLSDRTKARYLFLDMLSKSKEAYLFTRENPEKVKEWLKRDDINIIWVTNLPGKGRISPR 240
Query: 241 MLIEPESVLCEILKAGNVVVLLENLEILVLITDFRKLFECISRLRDIAISSGSYLIVHAK 300
MLIEPESVLCEILKAGNVVVLLENLEILVLITDFRKLFECISRLRDIAISSGSYLIVHAK
Sbjct: 241 MLIEPESVLCEILKAGNVVVLLENLEILVLITDFRKLFECISRLRDIAISSGSYLIVHAK 300
Query: 301 KEAVGEREWALLESELAPIE 320
KEAVGEREWALLESELAPIE
Sbjct: 301 KEAVGEREWALLESELAPIE 320
>pir||C75072 hypothetical protein PAB1727 - Pyrococcus abyssi (strain Orsay)
>gi|5458392|emb|CAB49880.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 193
Score = 82.3 bits (200), Expect = 7e-15
Identities = 58/177 (32%), Positives = 87/177 (48%), Gaps = 5/177 (2%)
Query: 3 ELKLEAREYMEKIVKKLKDLSPK---EILSYAIFNEEAEIRYYRELAKRSERESVRVLFL 59
EL +E E IV +K+LS K EILSYA+ E + Y L + R F
Sbjct: 6 ELFMERASIHEDIVNAIKELSSKSLKEILSYALSGELDSTKVYEFLYENLPDGYPREKFK 65
Query: 60 QMADESQEHHDRLYKLFKELYPNEEPVEVDAPPVEVAPFYPKF--ETVDDYLEALEYCME 117
+ + ++H ++ K+F+ L+P EEPVEV A F TV DYL+A E M+
Sbjct: 66 EFIEMERDHDRKVEKIFRALFPGEEPVEVKLKTWSKAVLEKDFRLRTVKDYLKAPEIAMD 125
Query: 118 SELFAKETYEVLALKATNEDARVLFAQLAEMENDHYLRLKKLYNLLTSFKQKKILPE 174
E ++ Y +L N + + + +LAE E HY L+K Y+ + + +K L E
Sbjct: 126 LEKLSEGVYTMLYDILRNPEHKRIMKKLAEDERYHYNFLRKEYDFYSQIEAEKALKE 182
>pir||G75139 hypothetical protein PAB1750 - Pyrococcus abyssi (strain Orsay)
>gi|5458343|emb|CAB49832.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 175
Score = 74.9 bits (181), Expect = 1e-12
Identities = 47/165 (28%), Positives = 86/165 (51%), Gaps = 6/165 (3%)
Query: 6 LEAREYMEKIVKKLKDLSPKEILSYAIFNEEAEIRYYRELAKRSERESVRVLFLQMADES 65
+E R+ ME + K+K+L +E+L AI +E ++Y A++ + E ++ L +A E
Sbjct: 4 MEVRK-MEVSLDKIKELPLEELLGMAIKSEIEARKFYESFAEKIDIEPLKGKILWLASEE 62
Query: 66 QEHHDRLYKLFKELYPNEE---PVEVDAPPVEVAPFYPKFETVDDYLEALEYCMESELFA 122
++H L KL+ ++P +E P E P E+ P + + D ++ + + M++E A
Sbjct: 63 EKHEKMLRKLYSSMFPGKEVVFPKEHIGP--ELQPVAKELKGSQDVIDLIHWAMKAEEIA 120
Query: 123 KETYEVLALKATNEDARVLFAQLAEMENDHYLRLKKLYNLLTSFK 167
+ YE L E+ + L L++ME HY L+ Y LL ++
Sbjct: 121 AQFYEKLMDIVEGEEKKRLMKSLSDMERGHYYMLRAEYELLLDWE 165
>pir||E71099 hypothetical protein PH1057 - Pyrococcus horikoshii
>gi|3257472|dbj|BAA30155.1| (AP000004) 161aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 161
Score = 70.6 bits (170), Expect = 2e-11
Identities = 45/139 (32%), Positives = 74/139 (52%), Gaps = 7/139 (5%)
Query: 26 EILSYAIFNEEAEIRYYRELAKRSERESVRVLFLQMADESQEHHDRLYKLFKELYPNEEP 85
+ L+ A+ E+ E+++Y E+A+ ++ E R +FL +A E EH +++F+E NE
Sbjct: 8 DALALALEVEKTELKFYLEMARIAKEEKARKMFLFLASEEAEH----WRIFEEKLINELL 63
Query: 86 VEVDAPPVE---VAPFYPKFETVDDYLEALEYCMESELFAKETYEVLALKATNEDARVLF 142
+ P ++ V PK E ++A+E ME E E YE LA + +ED R
Sbjct: 64 KSCERPRIDEEIVKKLTPKVEGELSEIKAVEIGMEQEKATWEFYEKLAEEIRDEDVRKTL 123
Query: 143 AQLAEMENDHYLRLKKLYN 161
+LA++E HY LK Y+
Sbjct: 124 RELAKVEESHYELLKAQYD 142
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.382
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 115324867
Number of Sequences: 2977
Number of extensions: 4811243
Number of successful extensions: 15438
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 15426
Number of HSP's gapped (non-prelim): 5
length of query: 320
length of database: 189,106,746
effective HSP length: 58
effective length of query: 262
effective length of database: 154,394,500
effective search space: 40451359000
effective search space used: 40451359000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)