BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1672 (PAB1672) DE:Hypothetical protein
         (143 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75082 hypothetical protein PAB1672 - Pyrococcus abyssi (st...   274  3e-73
gi|11499772 conserved hypothetical protein [Archaeoglobus fulgid...   143  6e-34

>pir||E75082 hypothetical protein PAB1672 - Pyrococcus abyssi (strain Orsay)
           >gi|5458474|emb|CAB49962.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 143
           
 Score =  274 bits (694), Expect = 3e-73
 Identities = 143/143 (100%), Positives = 143/143 (100%)

Query: 1   MGRILMRFIDSNIFLYAMIKPKGNISKMILERKERSKRILLRVENGEDVVTTVVHLSEVA 60
           MGRILMRFIDSNIFLYAMIKPKGNISKMILERKERSKRILLRVENGEDVVTTVVHLSEVA
Sbjct: 1   MGRILMRFIDSNIFLYAMIKPKGNISKMILERKERSKRILLRVENGEDVVTTVVHLSEVA 60

Query: 61  NILEAKVSLTTAIKFLESLFLAENVKILPVSAEDYLKAILLSKEKRISVNDALAYLKMKE 120
           NILEAKVSLTTAIKFLESLFLAENVKILPVSAEDYLKAILLSKEKRISVNDALAYLKMKE
Sbjct: 61  NILEAKVSLTTAIKFLESLFLAENVKILPVSAEDYLKAILLSKEKRISVNDALAYLKMKE 120

Query: 121 LGIKEIYTFDRHFYNLDVKVVQE 143
           LGIKEIYTFDRHFYNLDVKVVQE
Sbjct: 121 LGIKEIYTFDRHFYNLDVKVVQE 143


>gi|11499772 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483221|pir||F69523 conserved hypothetical protein
           AF2190 - Archaeoglobus fulgidus
           >gi|2648337|gb|AAB89064.1| (AE000954) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 136
           
 Score =  143 bits (358), Expect = 6e-34
 Identities = 71/136 (52%), Positives = 96/136 (70%)

Query: 6   MRFIDSNIFLYAMIKPKGNISKMILERKERSKRILLRVENGEDVVTTVVHLSEVANILEA 65
           MRF+DSN+ +YA++KPK      I E K +S  IL R++ GE V TTVVHLSEVAN++ +
Sbjct: 1   MRFVDSNVLIYALLKPKKEPDDRIAEMKGKSVEILRRIQEGEKVATTVVHLSEVANVIAS 60

Query: 66  KVSLTTAIKFLESLFLAENVKILPVSAEDYLKAILLSKEKRISVNDALAYLKMKELGIKE 125
           + +   + +F++      NVK+  VSAEDYLKA LL+ EK + VNDALAY+KM+E  I+E
Sbjct: 61  RSNEKLSAEFVKEFLTLRNVKVFEVSAEDYLKASLLAVEKGVDVNDALAYVKMREHKIEE 120

Query: 126 IYTFDRHFYNLDVKVV 141
           IYTFD+HF  + V VV
Sbjct: 121 IYTFDKHFVKMGVVVV 136


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.139    0.362 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42041108
Number of Sequences: 2977
Number of extensions: 1384445
Number of successful extensions: 5050
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5048
Number of HSP's gapped (non-prelim): 2
length of query: 143
length of database: 189,106,746
effective HSP length: 58
effective length of query: 85
effective length of database: 154,394,500
effective search space: 13123532500
effective search space used: 13123532500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)