BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1685 (PAB1685) DE:Hypothetical protein
         (125 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75079 hypothetical protein PAB1685 - Pyrococcus abyssi (st...   252  8e-67
pir||C71082 hypothetical protein PH0921 - Pyrococcus horikoshii ...   145  1e-34

>pir||D75079 hypothetical protein PAB1685 - Pyrococcus abyssi (strain Orsay)
           >gi|5458449|emb|CAB49937.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 125
           
 Score =  252 bits (638), Expect = 8e-67
 Identities = 125/125 (100%), Positives = 125/125 (100%)

Query: 1   MEFLLLFMVSNMEGYGEIINMLRFFVRIKNFGYVDRIGNALTPEPVEIALHEAMRAFRSI 60
           MEFLLLFMVSNMEGYGEIINMLRFFVRIKNFGYVDRIGNALTPEPVEIALHEAMRAFRSI
Sbjct: 1   MEFLLLFMVSNMEGYGEIINMLRFFVRIKNFGYVDRIGNALTPEPVEIALHEAMRAFRSI 60

Query: 61  WEGAKTDEEGRRYIEKDGEKIYLPKIPSDTEIESFLNEVRRDIRIAKRVATLALAYPKER 120
           WEGAKTDEEGRRYIEKDGEKIYLPKIPSDTEIESFLNEVRRDIRIAKRVATLALAYPKER
Sbjct: 61  WEGAKTDEEGRRYIEKDGEKIYLPKIPSDTEIESFLNEVRRDIRIAKRVATLALAYPKER 120

Query: 121 KERGE 125
           KERGE
Sbjct: 121 KERGE 125


>pir||C71082 hypothetical protein PH0921 - Pyrococcus horikoshii
           >gi|3257334|dbj|BAA30017.1| (AP000004) 121aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 121
           
 Score =  145 bits (363), Expect = 1e-34
 Identities = 70/110 (63%), Positives = 85/110 (76%)

Query: 15  YGEIINMLRFFVRIKNFGYVDRIGNALTPEPVEIALHEAMRAFRSIWEGAKTDEEGRRYI 74
           Y  I+ MLRFFV++KNF YVDRIGNAL PE VE+AL E +RAFRS+ E A  D+EGRRY+
Sbjct: 9   YEGIVKMLRFFVQMKNFSYVDRIGNALNPETVEVALFETIRAFRSVRESASIDKEGRRYV 68

Query: 75  EKDGEKIYLPKIPSDTEIESFLNEVRRDIRIAKRVATLALAYPKERKERG 124
           EKDG KI +P IP D E+E FL +VR +I +AK VATLALAYP +R+  G
Sbjct: 69  EKDGNKILVPGIPRDEEVEKFLEDVRSNIGVAKLVATLALAYPSKRENSG 118


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.141    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44024515
Number of Sequences: 2977
Number of extensions: 1679008
Number of successful extensions: 5016
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5014
Number of HSP's gapped (non-prelim): 2
length of query: 125
length of database: 189,106,746
effective HSP length: 52
effective length of query: 73
effective length of database: 157,985,422
effective search space: 11532935806
effective search space used: 11532935806
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 160 (66.7 bits)