BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1686 (PAB1686) DE:Hypothetical protein
(316 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75079 hypothetical protein PAB1686 - Pyrococcus abyssi (st... 631 e-180
pir||B71082 hypothetical protein PH0920 - Pyrococcus horikoshii ... 529 e-149
gi|11499455 conserved hypothetical protein [Archaeoglobus fulgid... 205 6e-52
gb|AAK42187.1| Conserved hypothetical protein [Sulfolobus solfat... 165 7e-40
gb|AAK41675.1| Conserved hypothetical protein [Sulfolobus solfat... 163 2e-39
gb|AAK41634.1| Conserved hypothetical protein [Sulfolobus solfat... 155 5e-37
sp|Q57826|Y381_METJA HYPOTHETICAL PROTEIN MJ0381 >gi|2128288|pir... 102 7e-21
pir||B72596 hypothetical protein APE1235 - Aeropyrum pernix (str... 90 2e-17
>pir||C75079 hypothetical protein PAB1686 - Pyrococcus abyssi (strain Orsay)
>gi|5458448|emb|CAB49936.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 316
Score = 631 bits (1611), Expect = e-180
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MMFLSVGVRFEANVEALNMVETAGNYTKHRRVPYLVEEDGKLKTIYVPAISGESLAHAYQ 60
MMFLSVGVRFEANVEALNMVETAGNYTKHRRVPYLVEEDGKLKTIYVPAISGESLAHAYQ
Sbjct: 1 MMFLSVGVRFEANVEALNMVETAGNYTKHRRVPYLVEEDGKLKTIYVPAISGESLAHAYQ 60
Query: 61 EHLVKEALRMNLPVCEDCHRGEFYKSMNKVHLQKKISPIPNDPRKIEEAIIRKCVVEDVG 120
EHLVKEALRMNLPVCEDCHRGEFYKSMNKVHLQKKISPIPNDPRKIEEAIIRKCVVEDVG
Sbjct: 61 EHLVKEALRMNLPVCEDCHRGEFYKSMNKVHLQKKISPIPNDPRKIEEAIIRKCVVEDVG 120
Query: 121 GFLYAEKPPVRRSSTFQVSYALPIKSMALFATAEPQLHARHAQLDTSSKKGNVSEQMIYY 180
GFLYAEKPPVRRSSTFQVSYALPIKSMALFATAEPQLHARHAQLDTSSKKGNVSEQMIYY
Sbjct: 121 GFLYAEKPPVRRSSTFQVSYALPIKSMALFATAEPQLHARHAQLDTSSKKGNVSEQMIYY 180
Query: 181 VETGTALYGFVFNLDLDGIGVSAITSEPVLGEEEIKKRREAALMALFRMLSSAQFGAKLS 240
VETGTALYGFVFNLDLDGIGVSAITSEPVLGEEEIKKRREAALMALFRMLSSAQFGAKLS
Sbjct: 181 VETGTALYGFVFNLDLDGIGVSAITSEPVLGEEEIKKRREAALMALFRMLSSAQFGAKLS 240
Query: 241 RFFPVGGITELVVSVTEHPFVVTSPIYEGYAEKTEKRLEVLKSFNEDYFYTKTSEDKLPE 300
RFFPVGGITELVVSVTEHPFVVTSPIYEGYAEKTEKRLEVLKSFNEDYFYTKTSEDKLPE
Sbjct: 241 RFFPVGGITELVVSVTEHPFVVTSPIYEGYAEKTEKRLEVLKSFNEDYFYTKTSEDKLPE 300
Query: 301 EVLKEVIEYIREKEYI 316
EVLKEVIEYIREKEYI
Sbjct: 301 EVLKEVIEYIREKEYI 316
>pir||B71082 hypothetical protein PH0920 - Pyrococcus horikoshii
>gi|3257333|dbj|BAA30016.1| (AP000004) 316aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 316
Score = 529 bits (1348), Expect = e-149
Identities = 249/313 (79%), Positives = 287/313 (91%)
Query: 1 MMFLSVGVRFEANVEALNMVETAGNYTKHRRVPYLVEEDGKLKTIYVPAISGESLAHAYQ 60
MMFLSVG+RFEANVEALNMVETAGNYTKHRRVPYL+EE+GKLKT+YVPAISGESLAHAYQ
Sbjct: 1 MMFLSVGIRFEANVEALNMVETAGNYTKHRRVPYLIEENGKLKTVYVPAISGESLAHAYQ 60
Query: 61 EHLVKEALRMNLPVCEDCHRGEFYKSMNKVHLQKKISPIPNDPRKIEEAIIRKCVVEDVG 120
EHLV EAL LPVC+DC RGEFYKSMNK+HL+KK+SPIP+DP++IEEAI++ CVVEDVG
Sbjct: 61 EHLVNEALSAGLPVCDDCRRGEFYKSMNKIHLEKKVSPIPDDPKEIEEAIVKACVVEDVG 120
Query: 121 GFLYAEKPPVRRSSTFQVSYALPIKSMALFATAEPQLHARHAQLDTSSKKGNVSEQMIYY 180
GFLYAEKPPVRRSS FQVSYALP+KS+ALFAT+EPQLHARHAQ+D SSKKGNVSEQMIYY
Sbjct: 121 GFLYAEKPPVRRSSAFQVSYALPVKSVALFATSEPQLHARHAQIDASSKKGNVSEQMIYY 180
Query: 181 VETGTALYGFVFNLDLDGIGVSAITSEPVLGEEEIKKRREAALMALFRMLSSAQFGAKLS 240
VETGTALYGF+FNLDLD +G+SAITS+P+L + EIKKRRE +L ALFRMLSS+QFGAKLS
Sbjct: 181 VETGTALYGFIFNLDLDAVGISAITSKPILDDNEIKKRREVSLKALFRMLSSSQFGAKLS 240
Query: 241 RFFPVGGITELVVSVTEHPFVVTSPIYEGYAEKTEKRLEVLKSFNEDYFYTKTSEDKLPE 300
RFFPVGGITEL+V+VTEHPFVVTSPIY+ Y E+T++RL +LK+F E+ F T ED++ E
Sbjct: 241 RFFPVGGITELIVTVTEHPFVVTSPIYDDYIERTKRRLNILKNFGEEIFITIAKEDRVAE 300
Query: 301 EVLKEVIEYIREK 313
E LKE I+Y+ EK
Sbjct: 301 EALKEAIDYLNEK 313
>gi|11499455 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483176|pir||F69483 conserved hypothetical protein
AF1871 - Archaeoglobus fulgidus
>gi|2648669|gb|AAB89377.1| (AE000973) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 319
Score = 205 bits (516), Expect = 6e-52
Identities = 136/318 (42%), Positives = 182/318 (56%), Gaps = 14/318 (4%)
Query: 2 MFLSVGVRFEANVEALNMVETAGNYTKHRRVPYLVEEDGKLKTIYVPAISGESLAHAYQE 61
+F+SV R NVEA+NM E+ GNY KHRRVP +V D K T +VPAISGES+AH +QE
Sbjct: 7 VFVSVRGRVMLNVEAMNMTESVGNYVKHRRVP-VVLPDAKYTTYFVPAISGESIAHGFQE 65
Query: 62 HLVKEALRMNLPVCEDCHRGEFYKSMNK-VHLQKKISPIPNDPRKIEEAIIRKCVVEDVG 120
L + + L VC+ C +G F KS N+ V + S P D + E+ +I C+VEDVG
Sbjct: 66 VLAEVGKKNGLKVCKLCEKGIFLKSTNENVFKESFSSDPPKDDFEFEKTVIENCIVEDVG 125
Query: 121 GFLYAEKP--PVRRSSTFQVSYALPIKSMALFATAEPQLHARHAQLDTSSKKGNVSEQMI 178
GFLYA + V+R+S F Y +P++ A EPQLH+R+A L T +G QMI
Sbjct: 126 GFLYAPRAGGNVKRTSNFYTGYMIPVRESIEGAVIEPQLHSRYA-LGTPFVEGG-QGQMI 183
Query: 179 YYVETGTALYGFVFNLDLDGIGVSAITSEPVLGEEEIKKRRE---AALMALFRMLSSAQF 235
YYVE +A+Y F F+LD IG + + E E+ KR E AAL AL + L F
Sbjct: 184 YYVELSSAVYTFSFDLDTRYIGRTTFSYEK--AGTEVGKRSERINAALEALKKFLIEFAF 241
Query: 236 GAKLSRFFPVGGITELVVSVTEHPFVVTSPIYEGYAEKTEKRLEVLKSFNEDYFYTKTSE 295
GAK +RF PV LVV+V++ + V SP GY + K+ E + +FN F E
Sbjct: 242 GAKKTRFLPVMEWDSLVVAVSDDVWTVPSPYTAGYIDNARKKKEKV-NFNTKLFV--YPE 298
Query: 296 DKLPEEVLKEVIEYIREK 313
EEV+ E IE +E+
Sbjct: 299 GGSFEEVVVEAIEEAKER 316
>gb|AAK42187.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 321
Score = 165 bits (413), Expect = 7e-40
Identities = 110/283 (38%), Positives = 152/283 (52%), Gaps = 15/283 (5%)
Query: 9 RFEANVEALNMVETAGNYTKHRRVPYLVEEDGKLKTIYVPAISGESLAHAYQEHLVKEAL 68
RF N+E+LN VE+ GN TKHR P +++ YVP ISGE+LAHAYQ LV A
Sbjct: 7 RFLVNLESLNGVESIGNLTKHRTAPVVLKTSTGYLVRYVPVISGEALAHAYQASLVDIAK 66
Query: 69 RMNLPVCEDCHRGEFYKSMNKVHLQKKISPIP---NDPRKIEEAIIRKCVVEDVGGFLYA 125
+ LPV + EF K L+ + P ND R+ E ++ K V+ DVGGF+YA
Sbjct: 67 KEGLPVGNLSSQYEFIKFSTDEALKIEGIKEPKDYNDARRFEVEVMLKDVIADVGGFMYA 126
Query: 126 EKPPVRRSSTFQVSYALP-IKSMALFATAEPQLHARHAQLDTSSKKGNVSEQMIYYVETG 184
PVRR+S ++ Y +P ++ + A E Q H R S K Q I+ VE
Sbjct: 127 GSAPVRRTSRIKLGYMIPALRGDEIPAQLEAQFHVRF------SNKPVKGSQAIFNVEVS 180
Query: 185 TALYGFVFNLDLDGIGVSAITSEPVLGEEEIKKRR----EAALMALFRMLSSAQFGAKLS 240
+ALY F F LD D I V + E V GEEE+++++ ++A+ AL+ +L + FG K S
Sbjct: 181 SALYTFSFELDEDLIAVPSTVGEKVKGEEELERQKARRVDSAIKALYSLL-AGNFGGKRS 239
Query: 241 RFFPVGGITELVVSVTEHPFVVTSPIYEGYAEKTEKRLEVLKS 283
RF P + LVV T+ PF+ + Y + T RLE KS
Sbjct: 240 RFLPSMKLMSLVVVKTDFPFIPEPGHDDSYIKTTVMRLEKAKS 282
>gb|AAK41675.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 321
Score = 163 bits (409), Expect = 2e-39
Identities = 112/283 (39%), Positives = 152/283 (53%), Gaps = 15/283 (5%)
Query: 4 LSVGVRFEANVEALNMVETAGNYTKHRRVPYLVEEDGKLKTIYVPAISGESLAHAYQEHL 63
+S VRF N+E+LN VE+ GN TKHR P +++ YVP ISGE+LAHAYQ L
Sbjct: 2 ISGSVRFLVNLESLNGVESIGNLTKHRTAPVVLKTSTGYLVRYVPVISGEALAHAYQASL 61
Query: 64 VKEALRMNLPVCEDCHRGEFYKSMNKVHLQKKISPIP---NDPRKIEEAIIRKCVVEDVG 120
V A + LPV + EF K L+ + P ND R+ E ++ K V+ DVG
Sbjct: 62 VDIAKKEGLPVGSLSSQYEFIKFSTDEALKIEGIKEPKDYNDARRFEVEVMLKDVIADVG 121
Query: 121 GFLYAEKPPVRRSSTFQVSYALP-IKSMALFATAEPQLHARHAQLDTSSKKGNVSEQMIY 179
GF+YA PVRR+S ++ Y +P ++ + A E Q H R S K Q I+
Sbjct: 122 GFMYAGGAPVRRTSRIKLGYMIPALRGDEIPAQLEAQFHVRF------SNKPVSGSQAIF 175
Query: 180 YVETGTALYGFVFNLDLDGIGVSAITSEPVLGEEEIK----KRREAALMALFRMLSSAQF 235
VE +ALY F F LD D I V + E V GEEE++ KR ++A+ AL+ +L S F
Sbjct: 176 NVEVSSALYTFSFELDEDLIAVPSTFGEKVKGEEELERQKAKRVKSAIKALYSLL-SGNF 234
Query: 236 GAKLSRFFPVGGITELVVSVTEHPFVVTSPIYEGYAEKTEKRL 278
G K SRF P + LVV+ T+ PF+ + Y + T RL
Sbjct: 235 GGKRSRFLPSMKLMSLVVTKTDFPFMPEPAHDDDYIKTTIMRL 277
>gb|AAK41634.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 318
Score = 155 bits (389), Expect = 5e-37
Identities = 100/261 (38%), Positives = 143/261 (54%), Gaps = 7/261 (2%)
Query: 2 MFLSVGVRFEANVEALNMVETAGNYTKHRRVPYLVEEDGKLKTIYVPAISGESLAHAYQE 61
M++S VR+ NVE LN VE+AGNY +HRR P + ++ YVPA+SGE +AH YQ
Sbjct: 8 MWISFSVRYLVNVEDLNNVESAGNYVRHRRAPLVFKDKDSYTVTYVPAVSGEMIAHGYQM 67
Query: 62 HLVKEALRMNLPVCEDCHRGEFYK--SMNKVHLQKKISPIPNDPRKIEEAIIRKCVVEDV 119
+LV+ AL+ NLPV +G K S +KVH K + E +I + +VEDV
Sbjct: 68 NLVELALQRNLPVDSLAKQGILIKRGSDDKVHEGTKCT--DEKGSDYELCVINEDIVEDV 125
Query: 120 GGFLYAEKPPVRRSSTFQVSYALPIKSMALFATAEPQLHARHAQLDTSSKKGNVSEQMIY 179
GF+ K V+R+S SY +P +T Q H R+A + K N + Q +Y
Sbjct: 126 AGFMNPNK-LVKRTSNVAFSYMVPAIDAVKASTISSQFHVRYANKELMDKYKNENIQSLY 184
Query: 180 YVETGTALYGFVFNLDLDGIGVSAITSEPVLGEEEIKKRREAALMALFRMLSSAQFGAKL 239
+ET +A Y L+++ +G + + PV ++ K R +AAL AL L+ FGAKL
Sbjct: 185 NIETASASYVLTGYLNVNSVGKT--QNYPVKEVDKKKDREKAALDALMLTLTQFLFGAKL 242
Query: 240 SRFFPVGGITELVVSVTEHPF 260
+RF P+ I L VS +E PF
Sbjct: 243 TRFKPIVEIEALFVSASEKPF 263
>sp|Q57826|Y381_METJA HYPOTHETICAL PROTEIN MJ0381 >gi|2128288|pir||E64347 hypothetical
protein MJ0381 - Methanococcus jannaschii
>gi|1591087|gb|AAB98370.1| (U67491) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 320
Score = 102 bits (251), Expect = 7e-21
Identities = 98/333 (29%), Positives = 148/333 (44%), Gaps = 41/333 (12%)
Query: 2 MFLSVGVRFEANVEALNMVETAG-NYTKHRRVPYLVEEDGKLKTIYVPAISGESLAH--- 57
MFL + R N +LN G NY + + ++ D + + + VPAISG + H
Sbjct: 1 MFLRISGRVRLNSHSLNAQGGGGTNYVEITKAKVSIKNDDRWEILEVPAISGNMVKHWHF 60
Query: 58 ----------AYQEHLVKEALRMNLPVCEDCHRGEFYKSMNKVHLQKKISPIPNDPRKIE 107
Y+++L + ALR N G+ K+ + ++ K E
Sbjct: 61 VSFVDFFRETDYKDNLTERALRYN-----GARFGQETKAKKADGSEVEL--------KDE 107
Query: 108 EAIIRKCVVEDVGGFLYAEKPPVRRSSTFQVSYALPIKSMALFATAEPQLHARHAQLDTS 167
II+ DV GFL A K VRR S + S+ LP + +H ++D
Sbjct: 108 SEIIKNFADADVHGFL-APKTGVRRVSLVKTSFILPTEDFIKEVDERLVYAVKHNRVDID 166
Query: 168 SKKGNVS-----EQMIYYVETGTALYGFVFNLDLDGIGV-SAITSEPVLGEEEIKKRREA 221
K S QM++ E T LYGF LDL +GV + S PV+ ++E K R +
Sbjct: 167 EKGAIKSGEEQTAQMLFNREYATGLYGFEIILDLGFVGVPQSSPSNPVIEDDERKARIVS 226
Query: 222 ALMALFRMLSSAQFGAKLSRFFPVGGITELVVSVTEHPF-VVTSPIYEGYAEKTEKRLEV 280
AL AL MLS GA L+R FPV + E++ V+E P + YE Y E ++ +E
Sbjct: 227 ALKALIPMLSG-YIGANLARSFPVFKLEEMIAVVSEKPIPALVHGFYEDYVEVSKNVVEN 285
Query: 281 LKSFN---EDYFYTKTSEDKLP--EEVLKEVIE 308
K ED+ Y + + EE++ ++IE
Sbjct: 286 AKKLGFEIEDFGYNVDFGESVSSVEELISKIIE 318
>pir||B72596 hypothetical protein APE1235 - Aeropyrum pernix (strain K1)
>gi|5104910|dbj|BAA80224.1| (AP000061) 347aa long
hypothetical protein [Aeropyrum pernix]
Length = 347
Score = 90.5 bits (221), Expect = 2e-17
Identities = 88/301 (29%), Positives = 136/301 (44%), Gaps = 26/301 (8%)
Query: 1 MMFLSVGVRFEANVEALNMVETAGNYTKHRRVPYLVEEDGKLKTIYVPAISGESLAH--A 58
M ++ V R NV L TAGNY+ H R D K VP ++G SL H A
Sbjct: 1 MAYVRVAGRVRVNVAVLTGHGTAGNYSMHARARVYCCGDSS-KVYEVPVLTGNSLKHWHA 59
Query: 59 YQEHLVKEALRMNLPVCEDCHRGEFYKSMNKVHLQKKISPIPNDPRKIEEAIIRKCVVED 118
Y V +AL ++ + E C RG + N + + + EAI C D
Sbjct: 60 YYAAQVYQALGGSM-LNELCKRGIGLRGYN---VDTNLEGERRLATRESEAIKDFC--ND 113
Query: 119 VGGFLYAEKP-PVRRSSTFQVSYALPIKSMALFATAEP---------QLHARHAQLDTSS 168
+ GFL AE+ ++R S + S+A+P+ + + E L R A +++S
Sbjct: 114 LHGFLIAERGRQLKRDSLARFSFAIPVLNNEVLENIEKFSVTHNRVDPLQRRRAGEESNS 173
Query: 169 KKGNVSEQMIYYVETGTALYGFVFNLDLDGIGVSAITSE---PVLGEEEIKKRREAALMA 225
++ +E M++ E + LYG + DL+ + SE EEE +R A+L+A
Sbjct: 174 QETGATEMMVFKQEYSSGLYGISASFDLEYLCRPLYESEEGGSACDEEERMRRARASLLA 233
Query: 226 LFRMLSSAQFGAKLSRFFPVGGITELVVSVTEHPFVVTSPIYEGYAEKTEKRLEVLKSFN 285
L +L A +K +R P+ + ELVV+V P V + ++ Y EK +LKS
Sbjct: 234 LAYLLGGA--ASKQARALPIAMVEELVVAVCNKP--VPNAVHGSYENYVEKTASLLKSVT 289
Query: 286 E 286
E
Sbjct: 290 E 290
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.135 0.378
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110449227
Number of Sequences: 2977
Number of extensions: 4426186
Number of successful extensions: 13643
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13622
Number of HSP's gapped (non-prelim): 8
length of query: 316
length of database: 189,106,746
effective HSP length: 59
effective length of query: 257
effective length of database: 153,796,013
effective search space: 39525575341
effective search space used: 39525575341
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)