BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1687 (PAB1687) DE:Hypothetical protein
         (256 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75079 hypothetical protein PAB1687 - Pyrococcus abyssi (st...   506  e-143
pir||A71082 hypothetical protein PH0919 - Pyrococcus horikoshii ...   296  1e-79

>pir||B75079 hypothetical protein PAB1687 - Pyrococcus abyssi (strain Orsay)
           >gi|5458447|emb|CAB49935.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 256
           
 Score =  506 bits (1290), Expect = e-143
 Identities = 256/256 (100%), Positives = 256/256 (100%)

Query: 1   MSIYARRNTFEVISLVFFLKVEASPSGIIALRSLPQSKMRNALRYIPPSTLIGAIAYPLF 60
           MSIYARRNTFEVISLVFFLKVEASPSGIIALRSLPQSKMRNALRYIPPSTLIGAIAYPLF
Sbjct: 1   MSIYARRNTFEVISLVFFLKVEASPSGIIALRSLPQSKMRNALRYIPPSTLIGAIAYPLF 60

Query: 61  HIAGYRGETLIDRRNPRSAADKIKDLFLWVTVKGSIKPIIYGSILKINRLHRGSVESAVT 120
           HIAGYRGETLIDRRNPRSAADKIKDLFLWVTVKGSIKPIIYGSILKINRLHRGSVESAVT
Sbjct: 61  HIAGYRGETLIDRRNPRSAADKIKDLFLWVTVKGSIKPIIYGSILKINRLHRGSVESAVT 120

Query: 121 SFPFAVMYGEQDYSISFVYLLKEEAVANSTYTLKDFERAAWGISRLGSRESIVSVESVKS 180
           SFPFAVMYGEQDYSISFVYLLKEEAVANSTYTLKDFERAAWGISRLGSRESIVSVESVKS
Sbjct: 121 SFPFAVMYGEQDYSISFVYLLKEEAVANSTYTLKDFERAAWGISRLGSRESIVSVESVKS 180

Query: 181 GKAKIREGKEARTSYAFPFAGKEVEGEGTLQAVFDWRRGIGSYSNPQYILMFYPDGEVTV 240
           GKAKIREGKEARTSYAFPFAGKEVEGEGTLQAVFDWRRGIGSYSNPQYILMFYPDGEVTV
Sbjct: 181 GKAKIREGKEARTSYAFPFAGKEVEGEGTLQAVFDWRRGIGSYSNPQYILMFYPDGEVTV 240

Query: 241 RGELKVVSLDGEEVVL 256
           RGELKVVSLDGEEVVL
Sbjct: 241 RGELKVVSLDGEEVVL 256


>pir||A71082 hypothetical protein PH0919 - Pyrococcus horikoshii
           >gi|3257332|dbj|BAA30015.1| (AP000004) 237aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 237
           
 Score =  296 bits (751), Expect = 1e-79
 Identities = 148/234 (63%), Positives = 183/234 (77%), Gaps = 3/234 (1%)

Query: 25  PSGIIALRSLPQSKMRNALRYIPPSTLIGAIAYPLFHIAGYRGETLIDRRNPRSAADKIK 84
           PSGIIALR+LPQSKMR ALRYIPP+ LIGAIAYPL H+ G RGET+ +++  RS A+ I 
Sbjct: 3   PSGIIALRALPQSKMRIALRYIPPTALIGAIAYPLLHLTGDRGETIYEKKTFRSKAESIA 62

Query: 85  DLFLWVTVKGSIKPIIYGSILKINRLHRGSVESAVTSFPFAVMYGEQDYSISFVYLLKEE 144
            LF WVT+K   +P +YGS+LKIN ++RG V+SAVTSFPFAV+YGE DY ++  YL+ ++
Sbjct: 63  SLFKWVTIKMGGRPKLYGSLLKINTIYRGKVQSAVTSFPFAVLYGEFDYILTAAYLIDDD 122

Query: 145 AVANSTYTLKDFERAAWGISRLGSRESIVSVESVKSGKAKIREGKEARTSYAFPFAGKEV 204
            +A STY+ KD  RAAWGI+R+GSRESIVSVE VK G+ KI   +EA+T+YAFPF GK+V
Sbjct: 123 KLAESTYSSKDLTRAAWGITRIGSRESIVSVEDVKIGRTKIEYTEEAKTAYAFPF-GKDV 181

Query: 205 --EGEGTLQAVFDWRRGIGSYSNPQYILMFYPDGEVTVRGELKVVSLDGEEVVL 256
             EG GT QAV DWR GIG YSN + I+MFYPDG V V+G+L V  LDGE +VL
Sbjct: 182 KIEGRGTFQAVVDWRSGIGDYSNARRIVMFYPDGIVEVKGKLSVAKLDGEVIVL 235


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.137    0.391 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88902513
Number of Sequences: 2977
Number of extensions: 3510128
Number of successful extensions: 7154
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7151
Number of HSP's gapped (non-prelim): 2
length of query: 256
length of database: 189,106,746
effective HSP length: 56
effective length of query: 200
effective length of database: 155,591,474
effective search space: 31118294800
effective search space used: 31118294800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)