BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1688 (PAB1688) DE:Hypothetical protein
         (393 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75079 hypothetical protein PAB1688 - Pyrococcus abyssi (st...   780  0.0
pir||H71081 hypothetical protein PH0918 - Pyrococcus horikoshii ...   461  e-129

>pir||A75079 hypothetical protein PAB1688 - Pyrococcus abyssi (strain Orsay)
           >gi|5458446|emb|CAB49934.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 393
           
 Score =  780 bits (1993), Expect = 0.0
 Identities = 393/393 (100%), Positives = 393/393 (100%)

Query: 1   MILEAIARLPFEGLSKELITLGFSWIVMDAGLSPNPNDFADAIENSMDTLKKRAMMNSSR 60
           MILEAIARLPFEGLSKELITLGFSWIVMDAGLSPNPNDFADAIENSMDTLKKRAMMNSSR
Sbjct: 1   MILEAIARLPFEGLSKELITLGFSWIVMDAGLSPNPNDFADAIENSMDTLKKRAMMNSSR 60

Query: 61  IGKNDRNSYDRVFSKWFGVKAPDTYMELFELVINETIKLLRSGKIDPAKSLQSITRNKNG 120
           IGKNDRNSYDRVFSKWFGVKAPDTYMELFELVINETIKLLRSGKIDPAKSLQSITRNKNG
Sbjct: 61  IGKNDRNSYDRVFSKWFGVKAPDTYMELFELVINETIKLLRSGKIDPAKSLQSITRNKNG 120

Query: 121 TYLGQAYNGEYAITPAVIKQPEYYEFQSEFLKPTAGQKAQIYLDPLWFSLLSMGFLTAFA 180
           TYLGQAYNGEYAITPAVIKQPEYYEFQSEFLKPTAGQKAQIYLDPLWFSLLSMGFLTAFA
Sbjct: 121 TYLGQAYNGEYAITPAVIKQPEYYEFQSEFLKPTAGQKAQIYLDPLWFSLLSMGFLTAFA 180

Query: 181 GYIRKRYYLMTKPGIEVYFPDVEEILIDGIIALTDAGISSRARLDAEELYELRIVMKLAE 240
           GYIRKRYYLMTKPGIEVYFPDVEEILIDGIIALTDAGISSRARLDAEELYELRIVMKLAE
Sbjct: 181 GYIRKRYYLMTKPGIEVYFPDVEEILIDGIIALTDAGISSRARLDAEELYELRIVMKLAE 240

Query: 241 EGRKVPEMTYPIALHISLEGQVYTELKTLQLDLKELSNYLATYVKKIENYRVMGVDLKVK 300
           EGRKVPEMTYPIALHISLEGQVYTELKTLQLDLKELSNYLATYVKKIENYRVMGVDLKVK
Sbjct: 241 EGRKVPEMTYPIALHISLEGQVYTELKTLQLDLKELSNYLATYVKKIENYRVMGVDLKVK 300

Query: 301 LKEGEKYPLWALVDIAEKELNKGVSGDRELLAYIFVKDLYRAVNSGRKELIEDSIFRLFR 360
           LKEGEKYPLWALVDIAEKELNKGVSGDRELLAYIFVKDLYRAVNSGRKELIEDSIFRLFR
Sbjct: 301 LKEGEKYPLWALVDIAEKELNKGVSGDRELLAYIFVKDLYRAVNSGRKELIEDSIFRLFR 360

Query: 361 QGRGLLEGEGRASGELRKVLRVFMQEDHLEVLI 393
           QGRGLLEGEGRASGELRKVLRVFMQEDHLEVLI
Sbjct: 361 QGRGLLEGEGRASGELRKVLRVFMQEDHLEVLI 393


>pir||H71081 hypothetical protein PH0918 - Pyrococcus horikoshii
           >gi|3257331|dbj|BAA30014.1| (AP000004) 377aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 377
           
 Score =  461 bits (1173), Expect = e-129
 Identities = 225/376 (59%), Positives = 291/376 (76%), Gaps = 6/376 (1%)

Query: 24  SWIVMDAGLSPNPNDFADAIENSMDTLKKRAMMNSSRIGKNDRNSYDRVFSKWFGVKAPD 83
           SW+VM+AGL P+  +  +A+E ++++L+ R  +N+S+IG+NDRNS++ V   WF    P+
Sbjct: 2   SWVVMEAGLEPDKEELIEALEGALNSLESRTRINTSKIGRNDRNSFNDVLQAWFNRSTPE 61

Query: 84  TYMELFELVINETIKLLRSGKIDPAKSLQSITRNKNGTYLGQAYNGEYAITPAVIKQPEY 143
           TY ELFELVI ETIKLL+  KIDP+ SL +I  +KNGTYLG  Y  + AI PA++KQPEY
Sbjct: 62  TYGELFELVIRETIKLLKEDKIDPSASLSTIKTDKNGTYLGVVYKEKQAILPAILKQPEY 121

Query: 144 YEFQSEFLKPTAGQKAQIYLDPLWFSLLSMGFLTAFAGYIRKRYYLMTKPGIEVYFP-DV 202
           YE+QS FLKPT  +KAQI +DPLWFS +++GF T+FAG+I  +YYL+TKPGIE ++P +V
Sbjct: 122 YEYQSSFLKPTTARKAQIRMDPLWFSFMALGFFTSFAGFISGKYYLITKPGIEGFWPYEV 181

Query: 203 EEILIDGIIALTDAGISSRARLDAEELYELRIVMKLAEEGRKVPEMTYPIALH-ISLEGQ 261
           E+I+  GI+ LT AG S R  L  EELYE+++ MKLAEE + + +  YP+ LH ISLEGQ
Sbjct: 182 EDIIEHGILPLTSAGASGRISLTTEELYEMKLAMKLAEEEKNIIDEVYPVTLHVISLEGQ 241

Query: 262 VYTELKTLQLDLKELSNYLATYVKKIENYRVMGVDLKVKLKEG----EKYPLWALVDIAE 317
            YTELKT+QL+L EL+NY+  YVKKI   +V  + L V+LKEG    +KYPLWALVDIAE
Sbjct: 242 SYTELKTIQLNLIELNNYITEYVKKIRASKVGSMSLLVELKEGGATVKKYPLWALVDIAE 301

Query: 318 KELNKGVSGDRELLAYIFVKDLYRAVNSGRKELIEDSIFRLFRQGRGLLEGEGRASGELR 377
           KE+ KGV GD E+LAYIFVKDLYRA+NSG+K++I+DSIFRLFRQGR LLEG  R SGE R
Sbjct: 302 KEVWKGVKGDEEMLAYIFVKDLYRAINSGKKDIIQDSIFRLFRQGRALLEGSSRGSGEFR 361

Query: 378 KVLRVFMQEDHLEVLI 393
           KV+R FM E+HL VL+
Sbjct: 362 KVMRTFMWEEHLGVLL 377


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.139    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142492297
Number of Sequences: 2977
Number of extensions: 6079446
Number of successful extensions: 15766
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15761
Number of HSP's gapped (non-prelim): 2
length of query: 393
length of database: 189,106,746
effective HSP length: 57
effective length of query: 336
effective length of database: 154,992,987
effective search space: 52077643632
effective search space used: 52077643632
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)